[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 27,963 items for (author: he & x)

EMDB-67441:
Structure of Human Aspartate--tRNA ligase 3-154 with linker and FC : ATYR0101
Method: single particle / : Nangle L, Tian H, Fung CP

PDB-21aa:
Structure of Human Aspartate--tRNA ligase 3-154 with linker and FC : ATYR0101
Method: single particle / : Nangle L, Tian H, Fung CP

EMDB-57068:
Cryo-EM structure of human DHX9 in complex with ATX-968 and ADP.
Method: single particle / : Hallett ST, Silva STN, Le Bihan Y, Van Montfort R

PDB-29by:
Cryo-EM structure of human DHX9 in complex with ATX-968 and ADP.
Method: single particle / : Hallett ST, Silva STN, Le Bihan Y, Van Montfort R

EMDB-66903:
SARS-CoV-2 Omicron JD.1.1 spike trimer (S-6P) in complex with 3 R102-9 Fabs and 3 C092 Fabs (3 RBD up)
Method: single particle / : Liu B, Niu C, Li Z, Yuan H, Xiong X

EMDB-66904:
SARS-CoV-2 Omicron JD.1.1 spike trimer (S-6P) in complex with 3 R102-9 Fabs and 3 C092 Fabs, focused refinement of RBD and Fab region
Method: single particle / : Liu B, Niu C, Li Z, Yuan H, Xiong X

EMDB-66509:
Cryo-EM structure of the flagellar filament in Vibrio parahaemolyticus VP288
Method: helical / : Ng CH

EMDB-66511:
Cryo-EM structure of the flagellar filament in Vibrio Cholerae
Method: helical / : Ng CH

EMDB-76387:
EcPriA bound to DNA replication fork with dsDNA lagging strand
Method: single particle / : Duckworth AT, Deorio HR, Grant T, Keck JL

EMDB-76388:
EcPriA bound to DNA replication fork with ssDNA lagging strand (CRR up)
Method: single particle / : Duckworth AT, Deorio HR, Grant T, Keck JL

EMDB-76389:
EcPriA bound to DNA replication fork with ssDNA lagging strand (CRR down)
Method: single particle / : Duckworth AT, Deorio HR, Grant T, Keck JL

EMDB-55646:
Cryo-EM structure of GPCR-miniGo Protein complex
Method: single particle / : Yardeni EH, Kiss DJ, Keseru GM, Shalev-Benami M

EMDB-55647:
Cryo-EM structure of GPCR-miniGo Protein complex
Method: single particle / : Yardeni EH, Kiss DJ, Keseru GM, Shalev-Benami M

EMDB-55648:
Cryo-EM structure of GPCR-miniGo Protein complex
Method: single particle / : Yardeni EH, Kiss DJ, Keseru GM, Shalev-Benami M

EMDB-55662:
Cryo-EM structure of GPCR-miniGo Protein complex
Method: single particle / : Yardeni EH, Kiss DJ, Keseru GM, Shalev-Benami M

EMDB-55663:
Cryo-EM structure of GPCR-miniGo Protein complex
Method: single particle / : Yardeni EH, Kiss DJ, Keseru GM, Shalev-Benami M

EMDB-55664:
Cryo-EM structure of GPCR-miniGo Protein complex
Method: single particle / : Yardeni EH, Kiss DJ, Keseru GM, Shalev-Benami M

EMDB-75841:
Cryo-electron tomogram of cyanobacteria Prochlorococcus MED4
Method: electron tomography / : Parvate AD, Evans JE

EMDB-76908:
Cryo-EM structure of Arabidopsis VIM1 in complex with hemi-methylated CG-containing nucleosome and UBC11
Method: single particle / : Chen X, Song J

EMDB-76625:
Cryo-EM structure of Arabidopsis VIM1 in complex with hemi-methylated CG-containing nucleosome 1
Method: single particle / : Chen X, Song J

EMDB-76627:
Cryo-EM structure of Arabidopsis VIM1 in complex with hemi-methylated CG-containing nucleosome 1
Method: single particle / : Chen X, Song J

EMDB-76629:
Cryo-EM structure of Arabidopsis VIM1 in complex with hemi-methylated CG-containing nucleosome 2
Method: single particle / : Chen X, Song J

EMDB-76630:
Cryo-EM structure of Arabidopsis VIM1 in complex with hemi-methylated CG-containing nucleosome 2
Method: single particle / : Chen X, Song J

EMDB-76631:
Cryo-EM structure of Arabidopsis VIM1 in complex with hemi-methylated CG-containing nucleosome 2
Method: single particle / : Chen X, Song J

PDB-12of:
Cryo-EM structure of Arabidopsis VIM1 in complex with hemi-methylated CG-containing nucleosome 1
Method: single particle / : Chen X, Song J

PDB-12og:
Cryo-EM structure of Arabidopsis VIM1 in complex with hemi-methylated CG-containing nucleosome 2
Method: single particle / : Chen X, Song J

EMDB-65074:
Complex structure of BoNT-like PG1 at pH 6.0
Method: single particle / : Liu Z, Chen P

EMDB-77872:
S. aureus DNA Gyrase in complex with OSUAB-0284 and DNA
Method: single particle / : Wheat CT, Bell CE

EMDB-63870:
cryo-EM structure of l-SPD bound D1R-Gs complex
Method: single particle / : Zhang XY, Liu H, Zhuang YW, Xu HE

EMDB-63871:
cryo-EM structure of l-SPD binding to D2R
Method: single particle / : Zhang XY, Liu H, Zhuang YW, Xu HE

EMDB-76626:
Cryo-EM structure of Arabidopsis VIM1 in complex with hemi-methylated CG-containing nucleosome 1
Method: single particle / : Chen X, Song J

EMDB-59180:
Structure of ZNFX1 in the ATP-bound, pre-ATP hydrolysis state
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59181:
Structure of ZNFX1 bound to RNA
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59182:
Structure of ZNFX1 in the post-ATP hydrolysis state
Method: single particle / : Heatley A, Naydenova K, Yip M, Randow F

EMDB-59183:
Helical polymer of human ZNFX1 proteins
Method: single particle / : Leigh KE, Harper CM, Naydenova K, Modis Y, Randow F

EMDB-59184:
Structure of the human ZNFX1 protein in a bundled sheet of twisted fibrils
Method: single particle / : Yip MCJ, Naydenova K, Randow F

PDB-32ul:
Structure of ZNFX1 in the ATP-bound, pre-ATP hydrolysis state
Method: single particle / : Yip MCJ, Naydenova K, Randow F

PDB-32um:
Structure of ZNFX1 bound to RNA
Method: single particle / : Yip MCJ, Naydenova K, Randow F

PDB-32un:
Structure of ZNFX1 in the post-ATP hydrolysis state
Method: single particle / : Heatley A, Naydenova K, Yip M, Randow F

EMDB-79039:
Australian bat lyssavirus glycoprotein PH domain in complex with broadly neutralizing human antibodies A6 and RVC20
Method: single particle / : Xu K, Xu Y

PDB-38pm:
Australian bat lyssavirus glycoprotein PH domain in complex with broadly neutralizing human antibodies A6 and RVC20
Method: single particle / : Xu K, Xu Y

EMDB-67036:
Glucagon-like peptide 1 receptor-Gs complex activated by the small molecule agonist SIM1
Method: single particle / : Xu HE, Shan H, He Q, Zhao L

EMDB-67037:
Glucose-dependent insulinotropic polypeptide receptor-Gs complex activated by the small molecule agonist SIM1
Method: single particle / : Xu HE, Shan H, He Q, Zhao L

EMDB-67038:
Glucagon receptor-Gs complex activated by the small molecule agonist SIM1
Method: single particle / : Xu HE, Shan H, He Q, Zhao L

PDB-9xn2:
Glucagon-like peptide 1 receptor-Gs complex activated by the small molecule agonist SIM1
Method: single particle / : Xu HE, Shan H, He Q, Zhao L

PDB-9xn3:
Glucose-dependent insulinotropic polypeptide receptor-Gs complex activated by the small molecule agonist SIM1
Method: single particle / : Xu HE, Shan H, He Q, Zhao L

PDB-9xn4:
Glucagon receptor-Gs complex activated by the small molecule agonist SIM1
Method: single particle / : Xu HE, Shan H, He Q, Zhao L

EMDB-72842:
RCK Gating Ring from Kch in the open conformation
Method: single particle / : Morote-Costas B, Zhou M

EMDB-72908:
RCK Gating Ring from Kch in the Intermediate conformation
Method: single particle / : Morote-Costas B, Zhou M

EMDB-72932:
RCK Gating Ring from Kch in the closed conformation
Method: single particle / : Morote-Costas B, Zhou M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more