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Showing all 21 items for (author: hansen & jn)

EMDB-50292:
Structure of Pol II-TC-NER-STK19 complex, consensus map
Method: single particle / : Lee SH, Sixma TK

EMDB-50293:
Structure of Pol II-TC-NER-STK19 complex, focused on CSA-DDB1-DDA1-UVSSA-STK19
Method: single particle / : Lee SH, Sixma TK

EMDB-50294:
Structure of Pol II-TC-NER-STK19 complex, focused on Pol II-ELOF1
Method: single particle / : Lee SH, Sixma TK

EMDB-50295:
Structure of Pol II-TC-NER-STK19 complex, focused on CRL4CSA
Method: single particle / : Lee SH, Sixma TK

EMDB-50306:
Structure of Pol II-TC-NER-STK19 complex, focused on CSA-DDB1-DDA1-CSB
Method: single particle / : Lee SH, Sixma TK

EMDB-50325:
Structure of Pol II-TC-NER-STK19 complex, composite map
Method: single particle / : Lee SH, Sixma TK

PDB-9fd2:
Structure of Pol II-TC-NER-STK19 complex
Method: single particle / : Lee SH, Sixma TK

EMDB-18377:
Focused map for CSA-DDB1-DDA1
Method: single particle / : Lee SH, Sixma TK

EMDB-18378:
Focused map for CSA-DDB1-DDA1 (map 2)
Method: single particle / : Lee SH, Sixma TK

EMDB-18380:
Focused map for UVSSA(VHS)-CSA-DDB1(BPA/BPC)-DDA1
Method: single particle / : Lee SH, Sixma TK

EMDB-18398:
CryoEM structure of UVSSA(VHS)-CSA-DDB1-DDA1
Method: single particle / : Lee SH, Sixma TK

EMDB-18413:
Consensus map of UVSSA(VHS)-CSA-DDB1-DDA1
Method: single particle / : Lee SH, Sixma TK

PDB-8qh5:
CryoEM structure of UVSSA(VHS)-CSA-DDB1-DDA1
Method: single particle / : Lee SH, Sixma TK

EMDB-11942:
"Tubulin glycylation controls axonemal dynein activity, flagellar beat and male fertility": Pre-pre-power stroke conformation of the mouse sperm outer dynein arms (ODAs). Both beta- and gamma-heavy chains are in pre-power stroke conformation. Cryo-ET, classification and sub-tomogram averaging.
Method: subtomogram averaging / : Gadadhar S, Alvarez Viar G, Hansen JN, Gong A, Kostarev A, Ialy-Radio C, Leboucher S, Whitfield M, Ziyyat A, Toure A, Alvarez L, Pigino G, Janke C

EMDB-11943:
"Tubulin glycylation controls axonemal dynein activity, flagellar beat and male fertility": Pre-post-power stroke conformation of the mouse sperm outer dynein arms (ODAs), with gamma-heavy chain in pre-power stroke conformation and beta-heavy chain in post-power stroke conformation. Cryo-ET, classification and sub-tomogram averaging.
Method: subtomogram averaging / : Gadadhar S, Alvarez Viar G, Hansen JN, Gong A, Kostarev A, Ialy-Radio C, Leboucher S, Whitfield M, Ziyyat A, Toure A, Alvarez L, Pigino G, Janke C

EMDB-11944:
Post-pre-power stroke conformation of the mouse sperm outer dynein arms (ODAs), with gamma-heavy chain in post-power stroke conformation and beta-heavy chain in pre-power stroke conformation. Reconstruction obtained by sub-tomogram classification and averaging from cryo-electron tomograms of active flagella of mouse sperm cells.
Method: subtomogram averaging / : Gadadhar S, Alvarez Viar G, Hansen JN, Gong A, Kostarev A, Ialy-Radio C, Leboucher S, Whitfield M, Ziyyat A, Toure A, Alvarez L, Pigino G, Janke C

EMDB-11945:
Post-post-power stroke conformation of the mouse sperm outer dynein arms (ODAs), with both gamma-heavy chain and beta-heavy chain in post-power stroke conformation. Reconstruction obtained with sub-tomogram classification and averaging from cryo-electron tomograms of active flagella of mouse sperm cells.
Method: subtomogram averaging / : Gadadhar S, Alvarez Viar G, Hansen JN, Gong A, Kostarev A, Ialy-Radio C, Leboucher S, Whitfield M, Ziyyat A, Toure A, Alvarez L, Pigino G, Janke C

EMDB-11946:
Axonemal 96nm-repeat from active sperm flagella of wild type mouse. Reconstruction obtained with cryo-ET and sub-tomogram averaging.
Method: subtomogram averaging / : Gadadhar S, Alvarez Viar G, Hansen JN, Gong A, Kostarev A, Ialy-Radio C, Leboucher S, Whitfield M, Ziyyat A, Toure A, Alvarez L, Pigino G, Janke C

EMDB-11947:
Axonemal 96nm-repeat from active sperm flagella of glycylation deficient mouse (Ttll3-/-Ttll8-/- mutation). Reconstruction obtained with cryo-ET and sub-tomogram averaging.
Method: subtomogram averaging / : Gadadhar S, Alvarez Viar G, Hansen JN, Gong A, Kostarev A, Ialy-Radio C, Leboucher S, Whitfield M, Ziyyat A, Toure A, Alvarez L, Pigino G, Janke C

EMDB-11948:
Axonemal 96nm-repeat from active flagella of wild type mouse, showing inner dynein arms (IDAs) in pre-power stroke conformations. Reconstruction obtained with classification and averaging of sub-tomograms from cryo-electron tomograms of wild type active flagella.
Method: subtomogram averaging / : Gadadhar S, Alvarez Viar G, Hansen JN, Gong A, Kostarev A, Ialy-Radio C, Leboucher S, Whitfield M, Ziyyat A, Toure A, Alvarez L, Pigino G, Janke C

EMDB-11949:
Axonemal 96nm-repeat from active flagella of wild type mouse, showing inner dynein arms (IDAs) in post-power stroke conformations. Reconstruction obtained with classification and averaging of sub-tomograms from cryo-electron tomograms of wild type active flagella.
Method: subtomogram averaging / : Gadadhar S, Alvarez Viar G, Hansen JN, Gong A, Kostarev A, Ialy-Radio C, Leboucher S, Whitfield M, Ziyyat A, Toure A, Alvarez L, Pigino G, Janke C

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About EMN search

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

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Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

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EMN Searchsearch resultCSV, TSV, or JSON
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Related info.:EMN Search / EMN Statistics

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Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

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