[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 373 items for (author: fan & yl)

EMDB-71823:
Cryo-EM structure of NCLX without calcium (class 2)
Method: single particle / : Zhang J, Feng L

EMDB-54255:
Mammalian AP3 complex on tubular membranes (AP3 centered)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

EMDB-54256:
Mammalian AP3 complex on tubular membranes (ARF1 centered Beta3-ARF1 dimer-Beta3 interface)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

EMDB-54257:
Mammalian AP3 complex on tubular membranes (ARF1 centered Beta3-ARF1 dimer-Delta interface)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

EMDB-54258:
Mammalian AP3 complex on tubular membranes (ARF1 centered Delta-ARF1 dimer-Delta3 interface)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

PDB-9rtw:
Mammalian AP3 complex on tubular membranes (AP3 centered)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

PDB-9rtx:
Mammalian AP3 complex on tubular membranes (ARF1 centered Beta3-ARF1 dimer-Beta3 interface)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

PDB-9rty:
Mammalian AP3 complex on tubular membranes (ARF1 centered Beta3-ARF1 dimer-Delta interface)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

PDB-9rtz:
Mammalian AP3 complex on tubular membranes (ARF1 centered Delta-ARF1 dimer-Delta3 interface)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

EMDB-64523:
Structure of MHV68 glycoprotein B in complex with Fab5
Method: single particle / : Cheng BZ, Fang XY, Xie C, Sun C, Liu Z, Zeng MS

EMDB-64532:
Structure of MHV68 glycoprotein B
Method: single particle / : Cheng BZ, Fang XY, Xie C, Sun C, Liu Z, Zeng MS

EMDB-64607:
Macacine gammaherpesvirus 4 glycoprotein B in complex with Fab5
Method: single particle / : Cheng BZ, Fang XY, Xie C, Sun C, Liu Z, Zeng MS

EMDB-71270:
The cryo-EM map of Retron_Eco8 complex in Apo state
Method: single particle / : Yu C, Wang C, Fu T

EMDB-71271:
The structure of Retron Eco8 in Apo state
Method: single particle / : Yu C, Wang C, Fu T

EMDB-71272:
The structure of Retron Eco8-SSB complex
Method: single particle / : Yu C, Wang C, Fu T

PDB-9p4j:
The structure of Retron Eco8 in Apo state
Method: single particle / : Yu C, Wang C, Fu T

PDB-9p4k:
The structure of Retron Eco8-SSB complex
Method: single particle / : Yu C, Wang C, Fu T

EMDB-65093:
Zea mays URE transporter DUR3 - URE bound
Method: single particle / : Wang YL, Lin HJ, Zhang JR, Fan MR

EMDB-66597:
Arabidopsis thaliana URE transporter DUR3 - URE bound
Method: single particle / : Wang YL, Lin HJ, Zhang JR, Fan MR

EMDB-62800:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with Ace2 constituent map 1
Method: single particle / : Hsu HF, Wu MH, Chang YC, Hsu STD

EMDB-62810:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with ACE2 constituent map 2
Method: single particle / : Hsu HF, Wu MH, Chang YC, Hsu STD

EMDB-52959:
Cryo-EM structure of human Mre11-Rad50 complex bound to DNA
Method: single particle / : Cui HJ, Lammens K, Hopfner KP, Fan YL, Kuybu F

EMDB-52960:
Cryo-EM structure of human Mre11-Rad50-Nbs1 complex bound to DNA
Method: single particle / : Cui HJ, Lammens K, Hopfner KP, Fan YL, Kuybu F

EMDB-52961:
Cryo-EM structure of human Mre11-Rad50-Nbs1 (MRN) complex bound to DNA and telomeric factor TRF2 fragment (438-542)
Method: single particle / : Cui HJ, Lammens K, Hopfner KP, Fan YL, Kuybu F

EMDB-52962:
Cryo-EM structure of human Mre11-Rad50 (MR) complex bound to DNA and telomeric factor TRF2 fragment (438-542)
Method: single particle / : Cui HJ, Lammens K, Hopfner KP, Fan YL, Kuybu F

EMDB-52964:
Cryo-EM structure of human Mre11-Rad50-Nbs1 (MRN) complex bound to DNA and telomeric factor TRF2
Method: single particle / : Cui HJ, Lammens K, Hopfner KP, Fan YL, Kuybu F

EMDB-54397:
Cryo-EM map of human MRE11-RAD50-NBS1 complex bound to ATPgammaS
Method: single particle / : Cui HJ, Fan YL, Hopfner KP

EMDB-48537:
A8 Fab in complex with CD97
Method: single particle / : Hattori T, Bang I, Fang M, Koide S

PDB-9mqr:
A8 Fab in complex with CD97
Method: single particle / : Hattori T, Bang I, Fang M, Koide S

EMDB-71819:
Cryo-EM structure of NCLX with calcium (class 3a)
Method: single particle / : Zhang J, Feng L

EMDB-71820:
Cryo-EM structure of NCLX with calcium (class 4a)
Method: single particle / : Zhang J, Feng L

EMDB-71821:
Cryo-EM structure of NCLX at low pH (class 4b)
Method: single particle / : Zhang J, Feng L

EMDB-71822:
Cryo-EM structure of NCLX without calcium (class 1)
Method: single particle / : Zhang J, Feng L

EMDB-71824:
Cryo-EM structure of NCLX without calcium (class 3)
Method: single particle / : Zhang J, Feng L

EMDB-71826:
Cryo-EM structure of NCLX with calcium (class 2a)
Method: single particle / : Zhang J, Feng L

EMDB-52832:
Helical reconstruction of a D. melanogaster N-clamp-decorated microtubule
Method: helical / : Wuertz M, Vermeulen BJA, Tonon G, Pfeffer S

EMDB-54160:
D. melanogaster augmin TII N-clamp (GST-fusion) bound to a microtubule
Method: single particle / : Wuertz M, Vermeulen BJA, Tonon G, Pfeffer S

EMDB-54161:
D. melanogaster Augmin TII N-clamp (GST-fusion) bound to a microtubule, well-defined subset of particles
Method: single particle / : Wuertz M, Vermeulen BJA, Tonon G, Pfeffer S

EMDB-54174:
D. melanogaster Augmin TII N-clamp bound to a microtubule
Method: single particle / : Wuertz M, Vermeulen BJA, Tonon G, Pfeffer S

PDB-9rpd:
D. melanogaster Augmin TII N-clamp (GST-fusion) bound to a microtubule, well-defined subset of particles
Method: single particle / : Wuertz M, Vermeulen BJA, Tonon G, Pfeffer S

EMDB-49573:
Cryo-EM structure of a de-novo designed binder NY1-B04 in complex with HLA-A*02:01 and NY-ESO-1-derived peptide SLLMWITQC
Method: single particle / : Gharpure A, Fernandez-Quintero ML, Ward AB

PDB-9nnf:
Cryo-EM structure of a de-novo designed binder NY1-B04 in complex with HLA-A*02:01 and NY-ESO-1-derived peptide SLLMWITQC
Method: single particle / : Gharpure A, Fernandez-Quintero ML, Ward AB

EMDB-52569:
MAP6d1 assembles protofilaments in the microtubule lumen
Method: subtomogram averaging / : GOPAL D, Wu J, Delaroche J, Bosc C, De Andrade M, Denarier E, Effantin G, Andrieux A, Gory-Faure S, Serre L, Arnal I

EMDB-52572:
MAP6d1 assembles protofilaments in the lumen of microtubule doublets
Method: subtomogram averaging / : Gopal D, Serre L, Arnal I

EMDB-52574:
MAP6d1 assembles microtubule doublets
Method: subtomogram averaging / : Gopal D, Serre L, Arnal I

EMDB-52575:
MAP6d1 assembles microtubule doublets
Method: subtomogram averaging / : Gopal D, Serre L, Arnal I

EMDB-52623:
MAP6d1 assembles microtubule doublets
Method: subtomogram averaging / : Gopal D, Serre L, Arnal I

EMDB-53452:
luminal protofilaments after masked refinement in a singlet microtubule
Method: subtomogram averaging / : GOPAL D, Wu J, Delaroche J, Bosc C, De Andrade M, Denarier E, Effantin G, Andrieux A, Gory-Faure S, Serre L, Arnal I

EMDB-53454:
Singlet microtubule after masked refinement.
Method: subtomogram averaging / : GOPAL D, Wu J, Delaroche J, Bosc C, De Andrade M, Denarier E, Effantin G, Andrieux A, Gory-Faure S, Serre L, Arnal I

EMDB-53457:
Combined map of singlet microtubule with 2 luminal protofilament
Method: subtomogram averaging / : GOPAL D, Wu J, Delaroche J, Bosc C, De Andrade M, Denarier E, Effantin G, Andrieux A, Gory-Faure S, Serre L, Arnal I

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more