[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 63 items for (author: dong & jf)

EMDB-64077:
Cryo-EM structure of SARS-CoV-2 KP.2 spike RBD in complex with ACE2
Method: single particle / : Jin XH, Sun L

EMDB-64078:
Cryo-EM structure of SARS-CoV-2 KP.2 spike in complex with ACE2
Method: single particle / : Jin XH, Sun L

EMDB-46656:
Mycobacteriophage Bxb1 tail tip - Consensus C3 map
Method: single particle / : Freeman KG

EMDB-46657:
Mycobacteriophage Bxb1 tail tip - Tail spike C1 local refinement
Method: single particle / : Freeman KG

EMDB-46658:
Mycobacteriophage Bxb1 tail tip - Tail wings C1 local refinement
Method: single particle / : Freeman KG

EMDB-46659:
Mycobacteriophage Bxb1 tail tip - Tail collar and fibers C1 local refinement
Method: single particle / : Freeman KG

EMDB-48066:
Subtomogram averaging of Bxb1 phage tail tip (infection state)
Method: subtomogram averaging / : Park D, Mondal S

EMDB-48067:
Subtomogram averaging of Bxb1 phage tail tip (infection state, extra density within cell wall)
Method: subtomogram averaging / : Park D, Mondal S

EMDB-39688:
BA.2.86 RBD protein in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

EMDB-39689:
Structure of BA.2.86 spike protein in complex with ACE2.
Method: single particle / : Wang YJ, Zang X, Sun L

EMDB-39690:
Structure of JN.1 RBD protein in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

EMDB-39691:
The JN.1 spike protein (S) in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

EMDB-46681:
Mycobacteriophage Bxb1 C1 Capsid and Portal - Composite map and model
Method: single particle / : Freeman KG, White SJ, Huet A, Conway JF

EMDB-46661:
Mycobacteriophage Bxb1 tail tip - Composite map and model
Method: single particle / : Freeman KG, White SJ, Huet A, Conway JF

EMDB-46669:
Mycobacteriophage Bxb1 portal and connector assembly - Composite map and model
Method: single particle / : Freeman KG, White SJ, Huet A, Conway JF

EMDB-46676:
Mycobacteriophage Bxb1 tail tube segment - Composite map and model
Method: single particle / : Freeman KG, White SJ, Huet A, Conway JF

EMDB-46685:
Mycobacteriophage Bxb1 Capsid - Composite map and model
Method: single particle / : Freeman KG, White SJ, Huet A, Conway JF

EMDB-46663:
Mycobacteriophage Bxb1 portal and connector assembly - C3 consensus refinement
Method: single particle / : Freeman KG

EMDB-46666:
Mycobacteriophage Bxb1 portal and connector assembly - Portal and head-to-tail adaptor C12 local refinement
Method: single particle / : Freeman KG

EMDB-46667:
Mycobacteriophage Bxb1 portal and connector assembly - Head-to-tail stopper and tail terminator C6 local refinement
Method: single particle / : Freeman KG

EMDB-46668:
Mycobacteriophage Bxb1 portal and connector assembly - Tail tube C3 local refinement
Method: single particle / : Freeman KG

EMDB-46673:
Mycobacteriophage Bxb1 tail tube segment - C1 consensus refinement
Method: single particle / : Freeman KG

EMDB-46674:
Mycobacteriophage Bxb1 tail tube segment - Core C1 local refinement
Method: single particle / : Freeman KG

EMDB-46675:
Mycobacteriophage Bxb1 tail tube segment - CTE domain C1 local refinement
Method: single particle / : Freeman KG

EMDB-46678:
Mycobacteriophage Bxb1 C1 Capsid and Portal - C1 consensus map
Method: single particle / : Freeman KG

EMDB-46679:
Mycobacteriophage Bxb1 C1 Capsid and Portal - Portal C1 local refinement
Method: single particle / : Freeman KG

EMDB-46682:
Mycobacteriophage Bxb1 Capsid - Icosahedral Consensus Map
Method: single particle / : Freeman KG

EMDB-46684:
Mycobacteriophage Bxb1 Capsid - Penton C1 local refinement
Method: single particle / : Freeman KG

EMDB-46687:
Mycobacteriophage BaDAS-1 Icosahedral Map
Method: single particle / : Freeman KG

EMDB-46702:
Subtomogram averaging of Bxb1 phage capsid (DNA-filled) during the infection state
Method: subtomogram averaging / : Park D, Mondal S

EMDB-46703:
Subtomogram averaging of Bxb1 phage tail tube (DNA-filled) during the infection state
Method: subtomogram averaging / : Park D, Mondal S

EMDB-46704:
Subtomogram averaging of Bxb1 phage capsid (emptied) during the infection state
Method: subtomogram averaging / : Park D, Mondal S

EMDB-46705:
Subtomogram averaging of Bxb1 phage tail tube (emptied) during the infection state
Method: subtomogram averaging / : Park D, Mondal S

EMDB-46706:
Subtomogram averaging of Bxb1 phage portal (DNA-filled) during the infection state
Method: subtomogram averaging / : Park D, Mondal S

EMDB-46707:
Subtomogram averaging of Bxb1 phage portal (emptied) during the infection state
Method: subtomogram averaging / : Park D, Mondal S

EMDB-46723:
Subtomogram averaging of Bxb1 phage tail tip complex during the infection state
Method: subtomogram averaging / : Park D, Mondal S

EMDB-38342:
Structure of EBV LMP1 dimer
Method: single particle / : Gao P, Huang JF

EMDB-38343:
Structure of EBV LMP1 oligomer
Method: single particle / : Gao P, Huang JF

EMDB-39542:
CryoEM structure of fospropofol-bound MRGPRX4-Gq complex
Method: single particle / : Cao C, Fay JF, Roth BL

EMDB-33989:
Cryo-EM structure of the N-terminal domain of hMCM8/9 and HROB
Method: single particle / : Zheng JF, Weng ZF, Liu YF

EMDB-32346:
Cryo-EM structure of gMCM8/9 helicase
Method: single particle / : Zheng JF, Weng ZF, Liu YF

EMDB-32497:
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (focused refinement on Fab-RBD)
Method: single particle / : Zeng JW

EMDB-32498:
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (3U)
Method: single particle / : Zeng JW, Ge JW

EMDB-32499:
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (2u1d)
Method: single particle / : Zeng JW, Wang XW

EMDB-33477:
the cryo-EM structure of human mini-SNAPc in complex with hU6-1 PSE
Method: single particle / : Wang W, Sun JF

EMDB-0561:
Structure of the human frataxin-bound iron-sulfur cluster assembly complex
Method: single particle / : Fox NG, Yu X

EMDB-0560:
Structure of the human frataxin-bound iron-sulfur cluster assembly complex
Method: single particle / : Fox NG, Yu X

EMDB-6758:
Local map for the core region of the phycobilisome from the red alga Griffithsia pacifica
Method: single particle / : Zhang J, Ma JF, Sun S, Sui SF

EMDB-6759:
Local map for the Rd region of the phycobilisome from the red alga Griffithsia pacifica
Method: single particle / : Zhang J, Ma JF, Sun S, Sui SF

EMDB-6760:
Local map for the Ra region of the phycobilisome from the red alga Griffithsia pacifica
Method: single particle / : Zhang J, Ma JF, Sun S, Sui SF

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more