[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 34 items for (author: diederichs & k)

EMDB-49494:
Thermothelomyces thermophilus SAM complex closed conformation
Method: single particle / : Diederichs K, Botos I, Buchanan SK

EMDB-49495:
Thermothelomyces thermophilus SAM complex open conformation
Method: single particle / : Diederichs K, Botos I, Buchanan SK

EMDB-49496:
Thermothelomyces thermophilus SAM complex bound to darobactin A
Method: single particle / : Diederichs K, Botos I, Buchanan SK

PDB-9nk6:
Thermothelomyces thermophilus SAM complex closed conformation
Method: single particle / : Diederichs K, Botos I, Buchanan SK

PDB-9nk7:
Thermothelomyces thermophilus SAM complex open conformation
Method: single particle / : Diederichs K, Botos I, Buchanan SK

PDB-9nk8:
Thermothelomyces thermophilus SAM complex bound to darobactin A
Method: single particle / : Diederichs K, Botos I, Buchanan SK

EMDB-50645:
Single particle cryo-EM maps of AcrB wildtype monomers reconstituted in salipro nanodiscs
Method: single particle / : Lazarova M, Frangakis A, Pos KM

EMDB-50328:
Single particle cryo-EM maps of AcrB wildtype monomer classes in DDM
Method: single particle / : Lazarova M, Boernsen C, Frangakis A, Pos KM

EMDB-50329:
Single particle cryo-EM maps of AcrB V612F monomer classes in DDM
Method: single particle / : Lazarova M, Boernsen C, Frangakis A, Pos KM

EMDB-50331:
Single particle cryo-EM maps of AcrB V612W monomer classes in DDM
Method: single particle / : Lazarova M, Boernsen C, Frangakis A, Pos KM

EMDB-50332:
Single particle cryo-EM maps of AcrB V612F monomer classes in salipro nanodiscs
Method: single particle / : Lazarova M, Frangakis A, Pos KM

EMDB-50334:
Single particle cryo-EM structure of the multidrug efflux pump OqxB from Klebsiella pneumoniae
Method: single particle / : Lazarova M, Frangakis A, Pos KM

EMDB-50335:
Single particle cryo-EM maps of OqxB monomer classes in salipro nanodiscs
Method: single particle / : Lazarova M, Frangakis A, Pos KM

PDB-9fdp:
Single particle cryo-EM structure of the AcrB V612W monomer in the O state
Method: single particle / : Lazarova M, Boernsen C, Frangakis A, Pos KM

PDB-9fdq:
Single particle cryo-EM structure of the AcrB V612F monomer in the O state
Method: single particle / : Lazarova M, Frangakis A, Pos KM

PDB-9fdz:
Single particle cryo-EM structure of the multidrug efflux pump OqxB from Klebsiella pneumoniae
Method: single particle / : Lazarova M, Frangakis A, Pos KM

EMDB-17015:
Cryo-EM map of the focused refinement of the subfamily III haloalkane dehalogenase from Haloferax mediterranei dimer forming hexameric assembly.
Method: single particle / : Polak M, Novacek J, Chmelova K, Marek M

PDB-8ooh:
Cryo-EM map of the focused refinement of the subfamily III haloalkane dehalogenase from Haloferax mediterranei dimer forming hexameric assembly.
Method: single particle / : Polak M, Novacek J, Chmelova K, Marek M

EMDB-16998:
Cryo-EM structure of subfamily III haloalkane dehalogenase DhmeA from Haloferax mediterranei
Method: single particle / : Marek M, Novacek J, Polak M, Chmelova K

EMDB-17367:
Ternary complex of translating ribosome, NAC and METAP1
Method: single particle / : Jia M, Jaskolowski M, Scaiola A, Jomaa A, Ban N

PDB-8p2k:
Ternary complex of translating ribosome, NAC and METAP1
Method: single particle / : Jia M, Jaskolowski M, Scaiola A, Jomaa A, Ban N

EMDB-21913:
Mitochondrial SAM complex in lipid nanodiscs
Method: single particle / : Ni X, Botos I

EMDB-21914:
Mitochondrial SAM complex - monomer in detergent
Method: single particle / : Ni X, Botos I

EMDB-21915:
Mitochondrial SAM complex - dimer 1 in detergent
Method: single particle / : Ni X, Botos I

EMDB-21916:
Mitochondrial SAM complex - dimer 2 in detergent
Method: single particle / : Ni X, Botos I

EMDB-21917:
Mitochondrial SAM complex - dimer 3 in detergent
Method: single particle / : Ni X, Botos I

EMDB-21918:
Mitochondrial SAM complex - high resolution monomer in detergent
Method: single particle / : Ni X, Botos I

PDB-6wuh:
Mitochondrial SAM complex in lipid nanodiscs
Method: single particle / : Ni X, Botos I, Diederichs K

PDB-6wuj:
Mitochondrial SAM complex - monomer in detergent
Method: single particle / : Ni X, Botos I, Diederichs K

PDB-6wul:
Mitochondrial SAM complex - dimer 1 in detergent
Method: single particle / : Ni X, Botos I, Diederichs K

PDB-6wum:
Mitochondrial SAM complex - dimer 2 in detergent
Method: single particle / : Ni X, Botos I, Diederichs K

PDB-6wun:
Mitochondrial SAM complex - dimer 3 in detergent
Method: single particle / : Ni X, Botos I, Diederichs K

PDB-6wut:
Mitochondrial SAM complex - high resolution monomer in detergent
Method: single particle / : Ni X, Botos I, Diederichs K

EMDB-2102:
Structure of a stalled transfer intermediate of Sm proteins from the assembly chaperone pICln to the SMN-complex
Method: single particle / : Chari A, Grimm C, Fischer U, Stark H

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more