[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 637 items for (author: dai & at)

EMDB-48304:
Cryo-EM structure of human NBCn2
Method: single particle / : Yang S, Capper MJ, Zilberg G, Warren AL, Wacker D

EMDB-48318:
Cryo-EM structure of human NBCn2 bound to Carbonate
Method: single particle / : Yang S, Capper MJ, Zilberg G, Warren AL, Wacker D

EMDB-48320:
Cryo-EM structure of human NBCn2 bound to Compound 38J
Method: single particle / : Yang S, Capper MJ, Zilberg G, Warren AL, Wacker D

PDB-9mix:
Cryo-EM structure of human NBCn2
Method: single particle / : Yang S, Capper MJ, Zilberg G, Warren AL, Wacker D

PDB-9mjo:
Cryo-EM structure of human NBCn2 bound to Carbonate
Method: single particle / : Yang S, Capper MJ, Zilberg G, Warren AL, Wacker D

PDB-9mk6:
Cryo-EM structure of human NBCn2 bound to Compound 38J
Method: single particle / : Yang S, Capper MJ, Zilberg G, Warren AL, Wacker D

EMDB-70719:
cryoEM structure of IRAK4:KT-474:CRBN-DDB1 ternary complex
Method: single particle / : Fei X, Ramanathan A, Diagle C, Ford M, Campbell V, Zheng X, Li H, Sintchak M, Kamadurai H, Miller R, Kazmirski S, Huang X, Weiss M, Manolfi N, Zhu X

PDB-9opj:
cryoEM structure of IRAK4:KT-474:CRBN-DDB1 ternary complex
Method: single particle / : Fei X, Ramanathan A, Diagle C, Ford M, Campbell V, Zheng X, Li H, Sintchak M, Kamadurai H, Miller R, Kazmirski S, Huang X, Weiss M, Manolfi N, Zhu X

EMDB-77181:
PD-L1 complexed with Germinal-designed anti-PD-L1 scFv H5
Method: single particle / : Zhang JL, Rao B, Feng L

PDB-35tl:
PD-L1 complexed with Germinal-designed anti-PD-L1 scFv H5
Method: single particle / : Zhang JL, Rao B, Feng L

EMDB-66531:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with ADP
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66532:
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 1
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66533:
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 2
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66534:
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 3
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66535:
Cryo-EM structure of Streptococcus thermophilus FoeAB E504Q mutant in complex with ATP
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66536:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with ATP and ADP
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66537:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with AMPPNP in peptidisc
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

EMDB-66953:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with AMPPNP
Method: single particle / : Tanabe M, Taguchi A, Moriya T, Nishino K

PDB-9x46:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with ADP
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9x47:
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 1
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9x48:
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 2
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9x49:
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 3
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9x4a:
Cryo-EM structure of Streptococcus thermophilus FoeAB E504Q mutant in complex with ATP
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9x4b:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with ATP and ADP
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9x4c:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with AMPPNP in peptidisc
Method: single particle / : Taguchi A, Fujita J, Namba K, Nishino K

PDB-9xka:
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with AMPPNP
Method: single particle / : Tanabe M, Taguchi A, Moriya T, Nishino K

EMDB-76979:
Cryo-ET of mitochondrial membrane in direct interaction with alpha-synuclein exhibiting membrane morphological distortion
Method: electron tomography / : Jaber N, Dai W

EMDB-76980:
Supplemental: irregularly shaped mitochondria interacting with alpha-synuclein
Method: electron tomography / : Jaber N, Dai W

EMDB-76981:
Supplemental: alpha-synuclein oligomers on the surface of a mitochondrial membrane
Method: electron tomography / : Jaber N, Dai W

EMDB-76983:
Supplemental: mitochondria not associated with alpha-synuclein
Method: electron tomography / : Jaber N, Dai W

EMDB-56110:
Flat clathrin lattice on endosomes
Method: subtomogram averaging / : Gul M, Hakala M, Moparthi SB, Ganeva I, Bernat-Silvestre C, Marcuello C, Espadas J, Colom A, Kukulski W, Vassilopoulos S, Kaksonen M, Roux A, Kudryashev M

EMDB-56112:
Cryo-electron tomogram of endosomes in HeLa cells
Method: electron tomography / : Hakala M, Moparthi SB, Ganeva I, Gul M, Bernat-Silvestre C, Marcuello C, Espadas J, Colom A, Kudryashev M, Kukulski W, Vassilopoulos S, Kaksonen M, Roux A

EMDB-53004:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

PDB-9qc6:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

EMDB-70071:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to fluornitrazene (FNZ)
Method: single particle / : Robertson MJ, Skiniotis G

PDB-9o36:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to fluornitrazene (FNZ)
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-61706:
Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)
Method: single particle / : Ishiguro K, Mo Y, Shirouzu M, Suzuki T

EMDB-61708:
Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)
Method: single particle / : Ishiguro K, Mo Y, Shirouzu M, Suzuki T

EMDB-61709:
Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)
Method: single particle / : Ishiguro K, Mo Y, Shirouzu M, Suzuki T

EMDB-61720:
Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)
Method: single particle / : Ishiguro K, Mo Y, Shirouzu M, Suzuki T

PDB-9jpm:
Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)
Method: single particle / : Ishiguro K, Mo Y, Shirouzu M, Suzuki T

PDB-9jpo:
Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)
Method: single particle / : Ishiguro K, Mo Y, Shirouzu M, Suzuki T

PDB-9jpp:
Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)
Method: single particle / : Ishiguro K, Mo Y, Shirouzu M, Suzuki T

PDB-9jq2:
Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)
Method: single particle / : Ishiguro K, Mo Y, Shirouzu M, Suzuki T

EMDB-71677:
HIV-1 bnAb 1-23 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

EMDB-71678:
HIV-1 bnAb 9-71 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

PDB-9pit:
HIV-1 bnAb 1-23 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

PDB-9piv:
HIV-1 bnAb 9-71 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

PDB-9r90:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more