[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 69 items for (author: courbet & a)

EMDB-70890:
C1 symmetry cryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Weidle C, Carr KD, Alexis C, Borst AJ

EMDB-70780:
CryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Carr KD, Weidle C, Alexis C, Borst AJ

EMDB-75290:
cryoEM map for soluble OmpA beta-barrel WRAPs
Method: single particle / : Courbet A, Mihaljevic L

EMDB-75291:
cryoEM map of OmpA helical WRAP
Method: single particle / : Courbet A, Mihaljevic L

EMDB-47514:
Z4-C6: ZnO nucleating cyclic homo-oligomer
Method: single particle / : Courbet A, Saragovi A, Baker D

EMDB-47515:
ZnO nucleating cyclic homo-oligomer with nucleated crystal
Method: single particle / : Courbet A, Saragovi A, Baker D

EMDB-47326:
Catalytic domain of Dihydrolipoamide Succinytransferase
Method: single particle / : Carr KD, Borst AJ, Weidle C

PDB-9dz8:
Catalytic domain of Dihydrolipoamide Succinytransferase
Method: single particle / : Carr KD, Borst AJ, Weidle C

EMDB-40602:
cryoEM map for design HE0537, a D4 symmetric homo-oligomer designed with RFdiffusion.
Method: single particle / : Courbet A, Baker D, Watson J, Juergens D, Eisenach E

EMDB-29939:
EM map of de novo designed protein nanopore RNR_C6_3 using a reinforcement learning approach
Method: single particle / : Courbet A, Baker D

EMDB-41907:
Computationally Designed, Expandable O4 Octahedral Handshake Nanocage
Method: single particle / : Weidle C, Borst A

EMDB-42031:
Computational Designed Nanocage O43_129_+8
Method: single particle / : Weidle C, Kibler RD

EMDB-43318:
Twistless helix 12 repeat ring design R12B
Method: single particle / : Calise SJ, Kollman JM

EMDB-29974:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-41364:
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Method: single particle / : Weidle C, Borst AJ

EMDB-42906:
Computational Designed Nanocage O43_129
Method: single particle / : Weidle C, Kibler RD

EMDB-42944:
Computational Designed Nanocage O43_129_+4
Method: single particle / : Carr KD, Weidle C, Borst AJ

PDB-8gel:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

PDB-8tl7:
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Method: single particle / : Weidle C, Borst AJ

PDB-8v2d:
Computational Designed Nanocage O43_129
Method: single particle / : Weidle C, Kibler RD

PDB-8v3b:
Computational Designed Nanocage O43_129_+4
Method: single particle / : Carr KD, Weidle C, Borst AJ

EMDB-29893:
Computationally designed strut_C6_21 de novo protein assembly
Method: single particle / : Courbet A, Huddy TF, Hsia Y

EMDB-27031:
Accurate computational design of genetically encoded 3D protein crystals
Method: single particle / : Li Z, Borst AJ, Baker D

EMDB-40926:
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Method: single particle / : Weidle C, Borst A

PDB-8cwy:
Accurate computational design of genetically encoded 3D protein crystals
Method: single particle / : Li Z, Borst AJ, Baker D

PDB-8szz:
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Method: single particle / : Weidle C, Borst A

EMDB-29915:
CryoEM map of a de novo designed octahedral nanocage with programmable volume; design cage_O4_34
Method: single particle / : Kibler RD, Borst AJ

EMDB-40070:
Cryo-EM map of synthetic cage_O3_10 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Hsia Y, Huddy TF, Baker D, Ekiert D, Bhabha G

EMDB-40071:
Cryo-EM map of synthetic cage_O3_10 reconstructed with O symmetry
Method: single particle / : Coudray N, Redler R, Hsia Y, Huddy TF, Baker D, Ekiert D, Bhabha G

EMDB-40073:
Cryo-EM map of synthetic cage_T3_5 reconstructed without symmetry (C1), with 1 monomer missing (class 3.0)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40074:
Cryo-EM map of synthetic cage_T3_5 reconstructed with T symmetry
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40075:
Cryo-EM map of synthetic cage_T3_5 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40076:
Cryo-EM map of synthetic cage_T3_5+2 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40072:
Cryo-EM map of synthetic cage_T3_5 reconstructed without symmetry (C1), with 1 trimer missing (class 3.1)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40557:
Cryo-EM structure of designed Influenza HA binder, HA_20, bound to Influenza HA (Strain: Iowa43)
Method: single particle / : Borst AJ, Bennett NR

PDB-8sk7:
Cryo-EM structure of designed Influenza HA binder, HA_20, bound to Influenza HA (Strain: Iowa43)
Method: single particle / : Borst AJ, Bennett NR

EMDB-28858:
Top-down design of protein architectures with reinforcement learning
Method: single particle / : Borst AJ, Baker D

EMDB-28859:
Top-down design of protein architectures with reinforcement learning
Method: single particle / : Borst AJ, Baker D

EMDB-28860:
Top-down design of protein architectures with reinforcement learning
Method: single particle / : Borst AJ, Baker D

PDB-8f4x:
Top-down design of protein architectures with reinforcement learning
Method: single particle / : Borst AJ, Baker D

PDB-8f53:
Top-down design of protein architectures with reinforcement learning
Method: single particle / : Borst AJ, Baker D

PDB-8f54:
Top-down design of protein architectures with reinforcement learning
Method: single particle / : Borst AJ, Baker D

EMDB-27659:
cryoEM map of de novo hallucinated homooligomer of C18-C6 symmetry, design HALC18-6_265.
Method: single particle / : Wicky BIM, Milles LF, Courbet AC, Baker D

EMDB-27658:
cryoEM map of de novo hallucinated homooligomer of C15-C5 symmetry, design HALC15-5_262.
Method: single particle / : Wicky BIM, Milles LF, Courbet AC, Baker D

EMDB-27660:
cryoEM map of de novo hallucinated homooligomer of C33-C3 symmetry, design HALC33-3_343
Method: single particle / : Wicky BIM, Milles LF, Courbet A, Baker D

EMDB-25575:
D8-C4 computationally-designed Rotor
Method: single particle / : Hansen JM, Courbet A, Quispe J, Kollman JM, Baker D

EMDB-25576:
D3-C5 computationally-designed rotor
Method: single particle / : Hansen JM, Courbet A, Quispe J, Kollman JM, Baker D

EMDB-25578:
D3-C5 computationally-designed rotor (axel only)
Method: single particle / : Hansen JM, Courbet A, Quispe J, Kollman JM, Baker D

EMDB-25579:
D3-C3 computationally-designed rotor
Method: single particle / : Hansen JM, Courbet A, Quispe J, Kollman JM, Baker D

EMDB-25580:
C3-C3 computationally-designed rotor
Method: single particle / : Hansen JM, Courbet A, Quispe J, Kollman JM, Baker D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more