[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 68 items for (author: coudray & n)

EMDB-45671:
Subtomogram average of the Polar Tube Outer Filament layer from Encephalitozoon intestinalis microsporidian spores
Method: subtomogram averaging / : Usmani M, Coudray N, Bobe D, Kopylov M, Ekiert DC, Bhabha G

EMDB-45672:
Subtomogram average of the Polar Tube Inner Filament layer from Encephalitozoon intestinalis microsporidian spores
Method: subtomogram averaging / : Usmani M, Coudray N, Bobe D, Kopylov M, Ekiert DC, Bhabha G

EMDB-45673:
Subtomogram average of the Polar Tube Outer Filament Layer and Inner Filament layer from Encephalitozoon intestinalis microsporidian spores
Method: subtomogram averaging / : Usmani M, Coudray N, Bobe D, Kopylov M, Ekiert DC, Bhabha G

EMDB-45674:
Subtomogram average of a whole Polar Tube cross-section from Encephalitozoon intestinalis microsporidian spores
Method: subtomogram averaging / : Usmani M, Coudray N, Bobe D, Kopylov M, Ekiert DC, Bhabha G

EMDB-41907:
Computationally Designed, Expandable O4 Octahedral Handshake Nanocage
Method: single particle / : Weidle C, Borst A

EMDB-42031:
Computational Designed Nanocage O43_129_+8
Method: single particle / : Weidle C, Kibler RD

EMDB-43318:
Twistless helix 12 repeat ring design R12B
Method: single particle / : Calise SJ, Kollman JM

EMDB-29974:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-41364:
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Method: single particle / : Weidle C, Borst AJ

EMDB-42906:
Computational Designed Nanocage O43_129
Method: single particle / : Weidle C, Kibler RD

EMDB-42944:
Computational Designed Nanocage O43_129_+4
Method: single particle / : Carr KD, Weidle C, Borst AJ

PDB-8gel:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

PDB-8tl7:
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Method: single particle / : Weidle C, Borst AJ

PDB-8v2d:
Computational Designed Nanocage O43_129
Method: single particle / : Weidle C, Kibler RD

PDB-8v3b:
Computational Designed Nanocage O43_129_+4
Method: single particle / : Carr KD, Weidle C, Borst AJ

EMDB-29915:
CryoEM map of a de novo designed octahedral nanocage with programmable volume; design cage_O4_34
Method: single particle / : Kibler RD, Borst AJ

EMDB-40070:
Cryo-EM map of synthetic cage_O3_10 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Hsia Y, Huddy TF, Baker D, Ekiert D, Bhabha G

EMDB-40071:
Cryo-EM map of synthetic cage_O3_10 reconstructed with O symmetry
Method: single particle / : Coudray N, Redler R, Hsia Y, Huddy TF, Baker D, Ekiert D, Bhabha G

EMDB-40073:
Cryo-EM map of synthetic cage_T3_5 reconstructed without symmetry (C1), with 1 monomer missing (class 3.0)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40074:
Cryo-EM map of synthetic cage_T3_5 reconstructed with T symmetry
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40075:
Cryo-EM map of synthetic cage_T3_5 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40076:
Cryo-EM map of synthetic cage_T3_5+2 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40072:
Cryo-EM map of synthetic cage_T3_5 reconstructed without symmetry (C1), with 1 trimer missing (class 3.1)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40162:
E. coli MlaC bound to MlaFEDB
Method: single particle / : MacRae MR, Coudray N, Ekiert D, Bhabha G

EMDB-29041:
E. coli MlaFEDB bound to MlaC
Method: single particle / : MacRae MR, Coudray N, Ekiert D, Bhabha G

EMDB-25066:
Structure of E. coli LetB delta (Ring6) mutant, Ring1 in the closed state (Model 1)
Method: single particle / : Vieni C, Coudray N

EMDB-25067:
Structure of E. coli LetB delta (Ring6) mutant, Ring 1 in the open state (Model 2, Rings 1-3 only)
Method: single particle / : Vieni C, Coudray N

PDB-7see:
Structure of E. coli LetB delta (Ring6) mutant, Ring1 in the closed state (Model 1)
Method: single particle / : Vieni C, Coudray N, Bhabha G, Ekiert D

PDB-7sef:
Structure of E. coli LetB delta (Ring6) mutant, Ring 1 in the open state (Model 2, Rings 1-3 only)
Method: single particle / : Vieni C, Coudray N, Bhabha G, Ekiert D

EMDB-23838:
Signal subtracted reconstruction of AAA2, AAA3, and AAA4 domains of dynein in the presence of a pyrazolo-pyrimidinone-based compound, Map 4
Method: single particle / : Santarossa CC, Coudray N, Urnavicius L, Ekiert DC, Bhabha G, Kapoor TM

EMDB-23841:
Yeast dynein motor domain in the presence of a pyrazolo-pyrimidinone-based compound, Map 1
Method: single particle / : Santarossa CC, Urnavicius L, Coudray N, Ekeirt DC, Bhabha G, Kapoor TM

EMDB-23842:
Signal subtracted reconstruction of AAA5 and AAA6 domains of dynein in the presence of a pyrazolo-pyrimidinone-based compound, Map 5
Method: single particle / : Santarossa CC, Coudray N, Urnavicius L, Ekiert DC, Bhabha G, Kapoor TM

EMDB-23844:
Signal subtracted reconstruction of the AAA1 domain of dynein in the presence of a pyrazolo-pyrimidinone-based compound, Map 2
Method: single particle / : Santarossa CC, Urnavicius L, Coudray N, Ekiert DC, Bhabha G, Kapoor TM

EMDB-23846:
Signal subtracted reconstruction of the AAA1 domain of dynein in the presence of a pyrazolo-pyrimidinone-based compound, Map 3
Method: single particle / : Santarossa CC, Coudray N, Urnavicius L, Ekiert DC, Bhabha G, Kapoor TM

PDB-7mi3:
Signal subtracted reconstruction of AAA2, AAA3, and AAA4 domains of dynein in the presence of a pyrazolo-pyrimidinone-based compound, Model 4
Method: single particle / : Santarossa CC, Coudray N, Urnavicius L, Ekiert DC, Bhabha G, Kapoor TM

PDB-7mi6:
Yeast dynein motor domain in the presence of a pyrazolo-pyrimidinone-based compound, Model 1
Method: single particle / : Santarossa CC, Urnavicius L, Coudray N, Ekeirt DC, Bhabha G, Kapoor TM

PDB-7mi8:
Signal subtracted reconstruction of AAA5 and AAA6 domains of dynein in the presence of a pyrazolo-pyrimidinone-based compound, Model 5
Method: single particle / : Santarossa CC, Coudray N, Urnavicius L, Ekiert DC, Bhabha G, Kapoor TM

EMDB-22444:
Chlamydomonas reinhardtii radial spoke minimal head complex
Method: single particle / : Grossman-Haham I, Coudray N

EMDB-22446:
Chlamydomonas reinhardtii radial spoke head and neck (recombinant)
Method: single particle / : Grossman-Haham I, Coudray N

PDB-7jr9:
Chlamydomonas reinhardtii radial spoke minimal head complex
Method: single particle / : Grossman-Haham I, Coudray N, Yu Z, Wang F, Bhabha G, Vale RD

PDB-7jrj:
Chlamydomonas reinhardtii radial spoke head and neck (recombinant)
Method: single particle / : Grossman-Haham I, Coudray N, Yu Z, Wang F, Zhang N, Bhabha G, Vale RD

EMDB-22116:
Cryo-EM structure of MlaFEDB in nanodiscs with phospholipid substrates
Method: single particle / : Coudray N, Isom GL

PDB-6xbd:
Cryo-EM structure of MlaFEDB in nanodiscs with phospholipid substrates
Method: single particle / : Coudray N, Isom GL, MacRae MR, Saiduddin M, Ekiert DC, Bhabha G

EMDB-20993:
Lipophilic Envelope-spanning Tunnel B (LetB), Map 1
Method: single particle / : Isom GL, Coudray N

EMDB-20994:
Lipophilic Envelope-spanning Tunnel B (LetB), Map 2
Method: single particle / : Isom GL, Coudray N

EMDB-20995:
Lipophilic Envelope-spanning Tunnel B (LetB), Map 3
Method: single particle / : Isom GL, Coudray N

EMDB-20996:
Lipophilic Envelope-spanning Tunnel B (LetB), Map 4
Method: single particle / : Isom GL, Coudray N

EMDB-20997:
Lipophilic Envelope-spanning Tunnel B (LetB), Map 5
Method: single particle / : Isom GL, Coudray N

EMDB-20998:
Lipophilic Envelope-spanning Tunnel B (LetB), Map 6
Method: single particle / : Isom GL, Coudray N

EMDB-20999:
Lipophilic Envelope-spanning Tunnel B (LetB), Map 7
Method: single particle / : Isom GL, Coudray N

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more