[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 59 items for (author: choi & ky)

EMDB-71352:
Avian TRPM8 (Parus major) closed, ligand-free structure resolved in cell vesicles using cryo-EM
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-71391:
Human TRPM8 closed, ligand-free structure resolved in GDN using cryo-EM
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-71395:
Avian TRPM8 (Parus major) semi-swapped, ligand-free structure resolved in cell vesicles using cryo-EM
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-71444:
Avian TRPM8 (Parus major) semi-swapped, ligand-free structure at high pH and 4 degrees Celsius resolved in GDN using cryo-EM
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-71454:
Human TRPM8 menthol bound structure at 4 degrees Celsius resolved in cell vesicles using cryo-EM
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-74036:
Avian TRPM8 (Parus major) fully-swapped, closed, ligand-free in the presence of calcium, structure resolved in cell vesicles
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-74037:
Avian TRPM8 (Parus major) semi-swapped, closed, ligand-free in the presence of calcium, structure resolved in cell vesicles
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-74038:
Avian TRPM8 (Parus major) fully swapped closed, calcium free, in the presence of menthol, resolved in cell vesicles
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-74039:
Avian TRPM8 (Parus major) semi-swapped, closed, calcium free, menthol bound structure resolved in cell vesicles
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-74040:
Parus major TRPM8 with a chimeric human outer pore loops, semi-swapped, ligand-free, cold, structure resolved in GDN
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-74041:
Human TRPM8 V915Y fully-swapped, closed, ligand-free structure resolved in GDN
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-74042:
Human TRPM8 fully-swapped, desensitized, ligand-free structure at 4 degrees Celsius resolved in cell vesicles
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-74124:
Human TRPM8 fully-swapped, ligand-free structure in the absence of calcium at 4 degrees Celsius resolved in cell vesicles
Method: single particle / : Choi KY, Lin X, Cheng Y, Julius D

EMDB-60978:
Cryo-EM structure of MERS-CoV S1-NTD bound with KNIH-88 Fab
Method: single particle / : Jeon H, Yoo Y, Park K, Choi K

PDB-9ixv:
Cryo-EM structure of MERS-CoV S1-NTD bound with KNIH-88 Fab
Method: single particle / : Jeon H, Yoo Y, Park K, Choi K

EMDB-42521:
Structure of Lassa virus glycoprotein (Josiah) on the surface of VSVdG-Lassa-GPC vaccine particle.
Method: single particle / : Enriquez AS, Saphire EO

EMDB-43792:
phi29 empty capsid lacking pentons and portal
Method: single particle / : Woodson ME, Morais MC, Seth S, Zhang W, Jardine PJ

EMDB-43793:
phi29 empty capsid maturation intermediate with wild-type pRNA
Method: single particle / : Woodson ME, Morais MC, Zhang W, Jardine PJ

EMDB-33642:
Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with K202.B bispecific antibody
Method: single particle / : Yoo Y, Cho HS

PDB-7y6k:
Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with K202.B bispecific antibody
Method: single particle / : Yoo Y, Cho HS

EMDB-33984:
Complex structure of Neuropeptide Y Y2 receptor in complex with PYY(3-36) and Gi
Method: single particle / : Kang H, Park C, Kim J, Choi HJ

EMDB-33985:
Complex structure of Neuropeptide Y Y2 receptor in complex with NPY and Gi
Method: single particle / : Kang H, Park C, Kim J, Choi HJ

EMDB-35494:
Complex structure of Neuropeptide Y Y2 receptor in complex with NPY and Gi (Consensus map)
Method: single particle / : Kang H, Park C, Kim J, Choi HJ

EMDB-35495:
Complex structure of Neuropeptide Y Y2 receptor in complex with NPY and Gi (Focused map on NPY-Y2R)
Method: single particle / : Kang H, Park C, Kim J, Choi HJ

EMDB-35496:
Complex structure of Neuropeptide Y Y2 receptor in complex with NPY and Gi (Focused map on Gi-scFv16)
Method: single particle / : Kang H, Park C, Kim J, Choi HJ

EMDB-35497:
Complex structure of Neuropeptide Y Y2 receptor in complex with PYY(3-36) and Gi (Consensus map)
Method: single particle / : Kang H, Park C, Kim J, Choi HJ

EMDB-35498:
Complex structure of Neuropeptide Y Y2 receptor in complex with PYY(3-36) and Gi (Focused map on PYY(3-36)-Y2R)
Method: single particle / : Kang H, Park C, Kim J, Choi HJ

EMDB-35499:
Complex structure of Neuropeptide Y Y2 receptor in complex with PYY(3-36) and Gi (Focused map on Gi-scFv16)
Method: single particle / : Kang H, Park C, Kim J, Choi HJ

PDB-7yon:
Complex structure of Neuropeptide Y Y2 receptor in complex with PYY(3-36) and Gi
Method: single particle / : Kang H, Park C, Kim J, Choi HJ

PDB-7yoo:
Complex structure of Neuropeptide Y Y2 receptor in complex with NPY and Gi
Method: single particle / : Kang H, Park C, Kim J, Choi HJ

EMDB-31979:
Neuropeptide Y Y1 Receptor (NPY1R) in Complex with G Protein and its endogeneous Peptide-Agonist Neuropeptide Y (NPY)
Method: single particle / : Park C, Kim J, Jeong H, Kang H, Bang I, Choi HJ

PDB-7vgx:
Neuropeptide Y Y1 Receptor (NPY1R) in Complex with G Protein and its endogeneous Peptide-Agonist Neuropeptide Y (NPY)
Method: single particle / : Park C, Kim J, Jeong H, Kang H, Bang I, Choi HJ

EMDB-7459:
Cryo-EM structure at 3.8 A resolution of vaccine-elicited antibody vFP20.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Carragher B, Potter CS, Kwong PD

EMDB-7460:
Cryo-EM structure at 3.6 A resolution of vaccine-elicited antibody vFP16.02 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Carragher B, Potter CS, Kwong PD

PDB-6cde:
Cryo-EM structure at 3.8 A resolution of vaccine-elicited antibody vFP20.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Xu K, Liu K, Carragher B, Potter CS, Kwong PD

PDB-6cdi:
Cryo-EM structure at 3.6 A resolution of vaccine-elicited antibody vFP16.02 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Xu K, Liu K, Carragher B, Potter CS, Kwong PD

EMDB-8420:
Cryo-EM structure of BG505 DS-SOSIP HIV-1 Env trimer in complex with vaccine elicited, fusion peptide-directed antibody vFP1.01
Method: single particle / : Acharya P, Kwong PD, Potter CS, Carragher B

EMDB-8421:
Cryo-EM structure of an asymmetric complex of BG505 DS-SOSIP HIV-1 Env trimer with vaccine elicited, fusion peptide-directed antibody vFP5.01
Method: single particle / : Acharya P, Kwong PD, Potter CS, Carragher B

EMDB-8422:
Cryo-EM structure of an asymmetric complex of BG505 DS-SOSIP HIV-1 Env trimer with vaccine elicited, fusion peptide-directed antibody vFP5.01
Method: single particle / : Acharya P, Kwong PD, Potter CS, Carragher B

EMDB-5041:
Ribosome structure : Structural survey of large protein complexes in Desulfovibrio vulgaris Hildenborough (DvH)
Method: single particle / : Han BG, Dong M, Liu H, Camp L, Geller J, Singer M, Hazen TC, Choi M, Witkowska HE, Ball DA, Typke D, Downing KH, Shatsky M, Brenner SE, Chandonia JM, Biggin MD, Glaeser RM

EMDB-5042:
Lumazine synthase structure : Structural survey of large protein complexes in Desulfovibrio vulgaris Hildenborough (DvH)
Method: single particle / : Han BG, Dong M, Liu H, Camp L, Geller J, Singer M, Hazen TC, Choi M, Witkowska HE, Ball DA, Typke D, Downing KH, Shatsky M, Brenner SE, Chandonia JM, Biggin MD, Glaeser RM

EMDB-5043:
GroEL structure : Structural survey of large protein complexes in Desulfovibrio vulgaris Hildenborough (DvH)
Method: single particle / : Han BG, Dong M, Liu H, Camp L, Geller J, Singer M, Hazen TC, Choi M, Witkowska HE, Ball DA, Typke D, Downing KH, Shatsky M, Brenner SE, Chandonia JM, Biggin MD, Glaeser RM

EMDB-5044:
RNA polymerase structure : Structural survey of large protein complexes in Desulfovibrio vulgaris Hildenborough (DvH)
Method: single particle / : Han BG, Dong M, Liu H, Camp L, Geller J, Singer M, Hazen TC, Choi M, Witkowska HE, Ball DA, Typke D, Downing KH, Shatsky M, Brenner SE, Chandonia JM, Biggin MD, Glaeser RM

EMDB-5045:
Phosphoenolpyruvate synthase structure : Structural survey of large protein complexes in Desulfovibrio vulgaris Hildenborough (DvH)
Method: single particle / : Han BG, Dong M, Liu H, Camp L, Geller J, Singer M, Hazen TC, Choi M, Witkowska HE, Ball DA, Typke D, Downing KH, Shatsky M, Brenner SE, Chandonia JM, Biggin MD, Glaeser RM

EMDB-5046:
Putative protein structure : Structural survey of large protein complexes in Desulfovibrio vulgaris Hildenborough (DvH)
Method: single particle / : Han BG, Dong M, Liu H, Camp L, Geller J, Singer M, Hazen TC, Choi M, Witkowska HE, Ball DA, Typke D, Downing KH, Shatsky M, Brenner SE, Chandonia JM, Biggin MD, Glaeser RM

EMDB-5047:
Inosine-5-monophosphate dehydrogenase structure : Structural survey of large protein complexes in Desulfovibrio vulgaris Hildenborough (DvH)
Method: single particle / : Han BG, Dong M, Liu H, Camp L, Geller J, Singer M, Hazen TC, Choi M, Witkowska HE, Ball DA, Typke D, Downing KH, Shatsky M, Brenner SE, Chandonia JM, Biggin MD, Glaeser RM

EMDB-1472:
Structure of bacteriophage N4 wild-type and mutants, determined by cryo-electron microscopy.
Method: single particle / : Choi KH, McPartland J, Kaganman I, Bowman VD, Rothman-Denes LB, Rossmann MG

EMDB-1475:
Structure of bacteriophage N4
Method: single particle / : Choi KH, McPartland J, Kaganman I, Bowman VD, Rothman-Denes LB, Rossmann MG

EMDB-1476:
Structure of a bacteriophage N4 mutant lacking gp65
Method: single particle / : Choi KH, McPartland J, Kaganman I, Bowman VD, Rothman-Denes LB, Rossmann MG

EMDB-1509:
Structure of a bacteriophage N4 mutant lacking gp17
Method: single particle / : Choi KH, McPartland J, Kaganman I, Bowman VD, Rothman-Denes LB, Rossmann MG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more