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Structure paper

TitleStructural energetics of cold sensitivity.
Journal, issue, pagesNature, Year 2026
Publish dateMar 25, 2026
AuthorsKevin Y Choi / Xiaoxuan Lin / Yifan Cheng / David Julius /
PubMed AbstractThermosensitive transient receptor potential (TRP) ion channels enable somatosensory nerve fibres to detect changes in our thermal environment over a wide physiologic range. In mammals, the menthol ...Thermosensitive transient receptor potential (TRP) ion channels enable somatosensory nerve fibres to detect changes in our thermal environment over a wide physiologic range. In mammals, the menthol receptor, TRPM8, is activated by temperatures below approximately 26 °C and is essential for the perception of cold or chemical cooling agents. A fascinating, yet still unachieved goal is to elucidate mechanisms, both structural and thermodynamic, whereby TRPM8 or other thermosensitive channels are gated by changes in ambient temperature. Recent studies using cryogenic electron microscopy have attempted to address this challenging question but are limited by difficulties in visualizing temperature-evoked conformational sub-states or assessing the energetic landscape governing gating transitions. Here we close this gap by combining cryogenic electron microscopy with hydrogen-deuterium exchange mass spectrometry to elucidate a mechanism for cold-evoked activation of TRPM8. First, we visualize TRPM8 channels in cellular membranes, where bona fide menthol- and cold-evoked open states are captured. We also identify a new 'semi-swapped' architecture in which interdigitation of channel sub-units is rearranged substantially following repositioning of the S6 transmembrane helix and elements of the pore region. We then use hydrogen-deuterium exchange mass spectrometry to pinpoint the pore and TRP helices as the regions exhibiting the greatest stimulus-evoked energetic changes that drive channel gating. Specifically, cold-evoked stabilization of the outer pore region repositions the pore lining S6 transmembrane helix while enabling binding of a regulatory lipid to stabilize the open channel. Structural mechanisms associated with activation are validated by comparison of human TRPM8 with the menthol-sensitive but relatively cold-insensitive avian orthologue. We propose a free energy landscape and conformational pathway whereby cold or cooling agents activate this thermosensory receptor.
External linksNature / PubMed:41882351
MethodsEM (single particle)
Resolution2.86 - 4.44 Å
Structure data

EMDB-71352, PDB-9p7s:
Avian TRPM8 (Parus major) closed, ligand-free structure resolved in cell vesicles using cryo-EM
Method: EM (single particle) / Resolution: 3.5 Å

EMDB-71391, PDB-9p8y:
Human TRPM8 closed, ligand-free structure resolved in GDN using cryo-EM
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-71394, PDB-9p90:
Avian TRPM8 (Parus major) desensitized, fully-swapped, ligand-free structure resolved in cell vesicles using cryo-EM
Method: EM (single particle) / Resolution: 3.5 Å

EMDB-71395, PDB-9p91:
Avian TRPM8 (Parus major) semi-swapped, ligand-free structure resolved in cell vesicles using cryo-EM
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-71444, PDB-9par:
Avian TRPM8 (Parus major) semi-swapped, ligand-free structure at high pH and 4 degrees Celsius resolved in GDN using cryo-EM
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-71454, PDB-9pb5:
Human TRPM8 menthol bound structure at 4 degrees Celsius resolved in cell vesicles using cryo-EM
Method: EM (single particle) / Resolution: 3.5 Å

EMDB-71455, PDB-9pb6:
Avian TRPM8 (Parus major) menthol bound structure resolved in cell vesicles using cryo-EM
Method: EM (single particle) / Resolution: 3.6 Å

EMDB-74036, PDB-9zcn:
Avian TRPM8 (Parus major) fully-swapped, closed, ligand-free in the presence of calcium, structure resolved in cell vesicles
Method: EM (single particle) / Resolution: 3.5 Å

EMDB-74037, PDB-9zco:
Avian TRPM8 (Parus major) semi-swapped, closed, ligand-free in the presence of calcium, structure resolved in cell vesicles
Method: EM (single particle) / Resolution: 3.45 Å

EMDB-74038, PDB-9zcp:
Avian TRPM8 (Parus major) fully swapped closed, calcium free, in the presence of menthol, resolved in cell vesicles
Method: EM (single particle) / Resolution: 3.55 Å

EMDB-74039, PDB-9zcq:
Avian TRPM8 (Parus major) semi-swapped, closed, calcium free, menthol bound structure resolved in cell vesicles
Method: EM (single particle) / Resolution: 3.57 Å

EMDB-74040, PDB-9zcr:
Parus major TRPM8 with a chimeric human outer pore loops, semi-swapped, ligand-free, cold, structure resolved in GDN
Method: EM (single particle) / Resolution: 3.07 Å

EMDB-74041, PDB-9zcu:
Human TRPM8 V915Y fully-swapped, closed, ligand-free structure resolved in GDN
Method: EM (single particle) / Resolution: 2.86 Å

EMDB-74042, PDB-9zcv:
Human TRPM8 fully-swapped, desensitized, ligand-free structure at 4 degrees Celsius resolved in cell vesicles
Method: EM (single particle) / Resolution: 3.65 Å

EMDB-74123, PDB-9zez:
Avian TRPM8 (Parus major) semi-swapped, calcium free, menthol bound structure resolved in cell vesicles
Method: EM (single particle) / Resolution: 3.41 Å

EMDB-74124, PDB-9zf0:
Human TRPM8 fully-swapped, ligand-free structure in the absence of calcium at 4 degrees Celsius resolved in cell vesicles
Method: EM (single particle) / Resolution: 3.71 Å

EMDB-74125: Parus major TRPM8, fully-swapped state determined in the presence of menthol
Method: EM (single particle) / Resolution: 3.9 Å

EMDB-74126: Avian TRPM8 (Parus major) "undetermined" class 1 resolved in cell vesicles using cryo-EM
Method: EM (single particle) / Resolution: 3.85 Å

EMDB-74127: Avian TRPM8 (Parus major) "undetermined" class 2 resolved in cell vesicles using cryo-EM
Method: EM (single particle) / Resolution: 3.39 Å

EMDB-74128: Human TRPM8 V915Y semi-swapped structure, cold in the presence of calcium, determined using GDN
Method: EM (single particle) / Resolution: 2.99 Å

EMDB-74129: Human TRPM8 (wild-type) semi-swapped structure, calcium-free, 4 degress Celsius, determined using cell vesicles
Method: EM (single particle) / Resolution: 4.44 Å

Chemicals

ChemComp-PT5:
[(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho / phospholipid*YM


ChemComp, No image

ChemComp-XUQ:
Unknown entry

ChemComp-CA:
Unknown entry

Source
  • parus major (Great Tit)
  • homo sapiens (human)
KeywordsMEMBRANE PROTEIN / TRPM8 / transient receptor potential melastatin 8 / Parus major / Human / menthol / TRANSPORT PROTEIN

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