[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 104 items for (author: cavadini & s)

EMDB-53534:
p53 bound to nucleosome at position SHL+5.9 (non-crosslinked sample, full map)

EMDB-53532:
p53 bound to nucleosome at position SHL+5.9 (non-crosslinked sample, composite map)

PDB-9r2m:
p53 bound to nucleosome at position SHL+5.9 (non-crosslinked sample, composite map)

EMDB-53478:
p53 bound to the nucleosome at position SHL-5.7 (crosslinked sample)

PDB-9r04:
p53 bound to the nucleosome at position SHL-5.7 (crosslinked sample)

EMDB-53517:
USP7 bound to a nucleosome/p53 complex

EMDB-53535:
p53 bound to nucleosome at position SHL+5.9 (non-crosslinked sample, focus refined map of p53)

EMDB-53537:
p53 bound to nucleosome at position SHL-5.7 (non-crosslinked sample)

PDB-9r2q:
p53 bound to nucleosome at position SHL-5.7 (non-crosslinked sample)

EMDB-53536:
p53 bound to nucleosome at position SHL+5.9 (crosslinked sample)

PDB-9r2p:
p53 bound to nucleosome at position SHL+5.9 (crosslinked sample)

EMDB-17582:
Cryo-EM structure of Caenorhabditis elegans DPF-3 (apo)

PDB-8pba:
Cryo-EM structure of Caenorhabditis elegans DPF-3 (apo)

EMDB-19767:
Structure of a 2873 Scaffold Base DNA Origami V1

EMDB-19769:
Structure of a 2873 Scaffold Base DNA Origami V2

EMDB-19770:
Structure of a 2873 Scaffold Base DNA Origami V3

EMDB-19775:
Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 with Desalted Purified Staples

EMDB-19776:
Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 with HPLC Purified Staples

EMDB-19867:
Cryo-EM Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 and TBA

EMDB-19874:
Refinement Focused on the 1st Body of a 1033 Scaffold-Based DNA Origami Nanostructure V4 with TBA

EMDB-19875:
Refinement Focused on the 2nd Body of a 1033 Scaffold-Based DNA Origami Nanostructure V4 with TBA

EMDB-19876:
Refinement Focused on the 3rd Body of a 1033 Scaffold-Based DNA Origami Nanostructure V4 with TBA

PDB-9eoq:
Cryo-EM Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 and TBA

EMDB-17539:
Cryo-EM structure of dimeric UBR5

EMDB-17540:
Cryo-EM structure of full-length human UBR5 (homotetramer)

PDB-8p82:
Cryo-EM structure of dimeric UBR5

PDB-8p83:
Cryo-EM structure of full-length human UBR5 (homotetramer)

EMDB-17542:
Negative stain map of UBR5 (dimer) in complex with RARA/RXRA

EMDB-17154:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (consensus and constituent map 1)

EMDB-17155:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 1)

EMDB-17156:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 2)

EMDB-17157:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (composite map)

EMDB-17158:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (constituent map 2 from additional focus classification on PAS domains)

EMDB-17159:
Cryo-EM map of MYC-MAX-OCT4-LIN28 complex

EMDB-17160:
Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)

EMDB-17161:
Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 1)

EMDB-17162:
MAX-MAX bound to a nucleosome at SHL+5.1 and SHL-6.9.

EMDB-17183:
OCT4 and MYC-MAX co-bound to a nucleosome

EMDB-17184:
MYC-MAX bound to a nucleosome at SHL+5.8

PDB-8osj:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 1)

PDB-8osk:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (composite map)

PDB-8osl:
Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)

PDB-8ots:
OCT4 and MYC-MAX co-bound to a nucleosome

PDB-8ott:
MYC-MAX bound to a nucleosome at SHL+5.8

EMDB-15484:
Structure of human DDB1-DCAF12 in complex with the C-terminus of CCT5

EMDB-15485:
Structure of the human DDB1-DCAF12 complex

EMDB-15486:
Negative-stain electron microscopy structure of DDB1-DCAF12-CCT5

PDB-8ajm:
Structure of human DDB1-DCAF12 in complex with the C-terminus of CCT5

PDB-8ajn:
Structure of the human DDB1-DCAF12 complex

PDB-8ajo:
Negative-stain electron microscopy structure of DDB1-DCAF12-CCT5

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more