[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 57 items for (author: capin & j)

EMDB-70812:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 19, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Scapin G

EMDB-70813:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 36, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Scapin G

PDB-9osw:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 19, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Mader P, Sicheri F

PDB-9osy:
Tetrameric POLQ Helicase-like Domain Bound to Cmpd 36, a Small-Molecule ATPase Inhibitor and Drug Candidate Analog
Method: single particle / : Zahn KE, Mader P, Sicheri F

EMDB-46597:
Human Sec61 complex inhibited by KZR-261
Method: single particle / : Park E, Wang L

PDB-9d6l:
Human Sec61 complex inhibited by KZR-261
Method: single particle / : Park E, Wang L

EMDB-52520:
Pre-clinical characterization of novel multi-client inhibitors of Sec61 with broad anti-tumor activity
Method: single particle / : Shahid R, Paavilainen VO

PDB-9hz5:
Pre-clinical characterization of novel multi-client inhibitors of Sec61 with broad anti-tumor activity
Method: single particle / : Shahid R, Paavilainen VO

EMDB-46598:
Human-yeast chimeric Sec complex bound to KZR-261 inhibitor
Method: single particle / : Park E, Wang L

EMDB-42247:
Degrader-induced complex between PTPN2 and CRBN-DDB1
Method: single particle / : Catalano C, Bratkowski M, Scapin G, Hao Q

PDB-8uh6:
Degrader-induced complex between PTPN2 and CRBN-DDB1
Method: single particle / : Catalano C, Bratkowski M, Scapin G, Hao Q

EMDB-40180:
MsbA bound to cerastecin C
Method: single particle / : Chen Y, Klein D

PDB-8gk7:
MsbA bound to cerastecin C
Method: single particle / : Chen Y, Klein D

EMDB-18323:
Chimeric Adenovirus-derived dodecamer
Method: single particle / : Buzas D, Borucu U, Bufton J, Kapadalakere SY, Toelzer C

PDB-8qbx:
Chimeric Adenovirus-derived dodecamer
Method: single particle / : Buzas D, Borucu U, Bufton J, Kapadalakere SY, Toelzer C

EMDB-16512:
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Method: single particle / : Bufton JC, Capin J, Boruku U, Garzoni F, Schaffitzel C, Berger I

EMDB-16522:
Structure of ADDoCoV-ADAH11
Method: single particle / : Yadav KNS, Buzas D, Berger-Schaffitzel C, Berger I

PDB-8c9n:
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Method: single particle / : Bufton JC, Capin J, Boruku U, Garzoni F, Schaffitzel C, Berger I

EMDB-23766:
Insulin receptor ectodomain dimer complexed with two IRPA-3 partial agonists
Method: single particle / : Gomez-Llorente Y, Zhou H

EMDB-23767:
Insulin receptor ectodomain dimer complexed with two IRPA-9 partial agonists
Method: single particle / : Gomez-Llorente Y, Zhou H

PDB-7md4:
Insulin receptor ectodomain dimer complexed with two IRPA-3 partial agonists
Method: single particle / : Gomez-Llorente Y, Zhou H, Scapin G

PDB-7md5:
Insulin receptor ectodomain dimer complexed with two IRPA-9 partial agonists
Method: single particle / : Gomez-Llorente Y, Zhou H, Scapin G

EMDB-23293:
Trimeric human Arginase 1 in complex with mAb1 - 2 hArg:3 mAb1 complex
Method: single particle / : Gomez-Llorente Y, Scapin G

EMDB-23294:
Trimeric human Arginase 1 in complex with mAb5
Method: single particle / : Gomez-Llorente Y, Scapin G

EMDB-23295:
Trimeric human Arginase 1 in complex with mAb1 - 2 hArg:2 mAb1 complex
Method: single particle / : Gomez-Llorente Y, Scapin G

EMDB-23296:
Trimeric human Arginase 1 in complex with mAb2
Method: single particle / : Gomez-Llorente Y, Scapin G

EMDB-23297:
Trimeric human Arginase 1 in complex with mAb3
Method: single particle / : Gomez-Llorente Y, Scapin G

EMDB-23298:
Trimeric human Arginase 1 in complex with mAb4
Method: single particle / : Gomez-Llorente Y, Scapin G

PDB-7lex:
Trimeric human Arginase 1 in complex with mAb1 - 2 hArg:3 mAb1 complex
Method: single particle / : Gomez-Llorente Y, Scapin G, Palte RL

PDB-7ley:
Trimeric human Arginase 1 in complex with mAb5
Method: single particle / : Gomez-Llorente Y, Scapin G, Palte RL

PDB-7lez:
Trimeric human Arginase 1 in complex with mAb1 - 2 hArg:2 mAb1 complex
Method: single particle / : Gomez-Llorente Y, Scapin G, Palte RL

PDB-7lf0:
Trimeric human Arginase 1 in complex with mAb2
Method: single particle / : Gomez-Llorente Y, Scapin G, Palte RL

PDB-7lf1:
Trimeric human Arginase 1 in complex with mAb3
Method: single particle / : Gomez-Llorente Y, Scapin G, Palte RL

PDB-7lf2:
Trimeric human Arginase 1 in complex with mAb4
Method: single particle / : Gomez-Llorente Y, Scapin G, Palte RL

EMDB-11144:
SARS CoV-2 Spike protein, Closed conformation, C1 symmetry
Method: single particle / : Toelzer C, Gupta K

EMDB-11145:
SARS CoV-2 Spike protein, Closed conformation, C3 symmetry
Method: single particle / : Toelzer C, Gupta K

EMDB-11146:
SARS CoV-2 Spike protein, Open conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Burucu U, Schaffitzel C, Berger I

PDB-6zb4:
SARS CoV-2 Spike protein, Closed conformation, C1 symmetry
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Burucu U, Schaffitzel C, Berger I

PDB-6zb5:
SARS CoV-2 Spike protein, Closed conformation, C3 symmetry
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Burucu U, Schaffitzel C, Berger I

EMDB-7135:
Hemagglutinin on a carbon nanowire grid plunged with Spotiton
Method: electron tomography / : Noble AN, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan Y, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B

EMDB-7138:
Rabbit muscle aldolase on a gold nanowire grid plunged with Spotiton
Method: electron tomography / : Noble AN, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan Y, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B

EMDB-7139:
Rabbit muscle aldolase on a carbon nanowire grid plunged with Spotiton
Method: electron tomography / : Noble AN, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan Y, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B

EMDB-7140:
Protein in nanodisc on a gold nanowire grid plunged with Spotiton
Method: electron tomography / : Noble AN, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan Y, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B

EMDB-7141:
Glutamate dehydrogenase on a holey carbon grid
Method: electron tomography / : Noble AN, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan Y, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B

EMDB-7142:
Glutamate dehydrogenase on a holey carbon grid
Method: electron tomography / : Noble AN, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan Y, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B

EMDB-7143:
GDH + 0.001% DDM on a carbon nanowire grid plunged with Spotiton
Method: electron tomography / : Noble AN, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan Y, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B

EMDB-7144:
DNAB helicase-helicase loader on a gold Quantifoil grid
Method: electron tomography / : Noble AN, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan Y, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B

EMDB-7145:
Apoferritin on a gold nanowire grid plunged with Spotiton
Method: electron tomography / : Noble AN, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan Y, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B

EMDB-7146:
Apoferritin on a gold nanowire grid plunged with Spotiton
Method: electron tomography / : Noble AN, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan Y, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B

EMDB-7147:
Apoferritin on a holey carbon nanowire grid plunged with Spotiton
Method: electron tomography / : Noble AN, Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan Y, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice WJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more