[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 40 items for (author: bourguet & m)

EMDB-54312:
VPS34-CII (VPS34 199-REIE-202 to 199-AAAA-202 mutant) bound to RAB5A (Q79L, focused refinement on the adaptor arm)
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54313:
VPS34-CII (VPS34 199-REIE-202 to 199-AAAA-202 mutant) bound to RAB5A (Q79L, focused refinement on the kinase arm)
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54314:
VPS34-CII (VPS34 199-REIE-202 to 199-AAAA-202 mutant) bound to RAB5A (Q79L), focused refinement on the base of the complex
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54315:
VPS34-CII (VPS34 199-REIE-202 to 199-AAAA-202 mutant) bound to RAB5A (Q79L, focused refinement on the interface between RAB5A and VPS34)
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54316:
VPS34-CII (VPS34 199-REIE-202 > 199-AAAA-202 mutant) bound to RAB5A-GTP (Q79L), consensus refinement
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54317:
VPS34-CII (VPS34 199-REIE-202 > 199-AAAA-202 mutant) bound to RAB5A-GTP (Q79L); unsharpened composite map
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54318:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit, focused refinement on the kinase arm
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54319:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit, focused refinement on the adaptor arm
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54320:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit, focused refinement of the RAB5A interface with VPS15
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54321:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit, consensus refinement
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54322:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit; unsharpened composite map
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54358:
VPS34-CII (VPS34 199-REIE-202 to 199-AAAA-202 mutant) bound to RAB5A (Q79L), primary composite map processed with CryoTEN
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54359:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit, composite map processed with CryoTEN.
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54361:
Apo VPS34-CII (VPS34/VPS15/BECLIN1/UVRAG), consensus refinement map processed with CryoTEN
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54362:
VPS34-CII bound to RAB5A-GTP 1-212 (C19S, C63S, Q79L) on the VPS34 subunit, primary map processed with CryoTEN
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54363:
VPS34-CII bound to RAB5A-GTP 1-212 (C19S, C63S, Q79L) on the VPS15 subunit, primary map processed with CryoTEN
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54364:
VPS34-CII (VPS34/VPS15/BECLIN1/UVRAG) bound to RAB5A (Q79L) on the VPS34 and VPS15 subunits, primary map processed with CryoTEN
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rx5:
VPS34-CII (VPS34 199-REIE-202 to 199-AAAA-202 mutant) bound to RAB5A (Q79L)
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rx6:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rx8:
Apo VPS34-CII (VPS34/VPS15/BECLIN1/UVRAG)
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rx9:
VPS34-CII bound to RAB5A-GTP 1-212 (C19S, C63S, Q79L) on the VPS34 subunit
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rxa:
VPS34-CII bound to RAB5A-GTP 1-212 (C19S, C63S, Q79L) on the VPS15 subunit
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rxb:
VPS34-CII (VPS34/VPS15/BECLIN1/UVRAG) bound to RAB5A (Q79L) on the VPS34 and VPS15 subunits
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54560:
Human complex II-BATS bound to membrane-attached Rab5a-GTP
Method: subtomogram averaging / : Dessus AN, Tremel S, Williams RL

EMDB-55637:
cryo-EM structure of AKT phosphorylated mTOR complex 2, overall refinement
Method: single particle / : Hay IM, Anandapadamanaban M, Williams RL

EMDB-55714:
cryo-EM structure of autophosphorylated mTOR complex 2, overall refinement
Method: single particle / : Hay IM, Anandapadamanaban M, Williams RL

EMDB-55715:
cryo-EM structure of autophosphorylated mTOR complex 2, focused on a single protomer
Method: single particle / : Hay IM, Anandapadamanaban M, Williams RL

EMDB-55716:
cryo-EM structure of AKT phosphorylated mTOR complex 2, focused on a single protomer
Method: single particle / : Hay IM, Anandapadamanaban M, Williams RL

EMDB-55803:
cryo-EM structure of dephosphorylated mTOR complex 2, overall refinement
Method: single particle / : Hay IM, Anandapadamanaban M, Williams RL

EMDB-55804:
cryo-EM structure of dephosphorylated mTOR complex 2, focused on a single protomer
Method: single particle / : Hay IM, Anandapadamanaban M, Williams RL

EMDB-56117:
cryo-ET structure of mTOR complex 2 on a PIP2-containing membrane
Method: subtomogram averaging / : Hay IM, Ahsan B, Williams RL

EMDB-18498:
Cryo-EM structure of the benzo[a]pyrene-bound Hsp90-XAP2-AHR complex
Method: single particle / : Kwong HS, Grandvuillemin L, Sirounian S, Ancelin A, Lai-Kee-Him J, Carivenc C, Lancey C, Ragan TJ, Hesketh EL, Bourguet W, Gruszczyk J

PDB-8qmo:
Cryo-EM structure of the benzo[a]pyrene-bound Hsp90-XAP2-AHR complex
Method: single particle / : Kwong HS, Grandvuillemin L, Sirounian S, Ancelin A, Lai-Kee-Him J, Carivenc C, Lancey C, Ragan TJ, Hesketh EL, Bourguet W, Gruszczyk J

EMDB-14971:
Cryo-EM structure of the indirubin-bound Hsp90-XAP2-AHR complex
Method: single particle / : Gruszczyk J, Savva CG, Lai-Kee-Him J, Bous J, Ancelin A, Kwong HS, Grandvuillemin L, Bourguet W

EMDB-14972:
Cryo-EM structure of the indirubin-bound Hsp90-XAP2-AHR complex (focused map).
Method: single particle / : Gruszczyk J, Savva CG, Lai-Kee-Him J, Bous J, Ancelin A, Kwong HS, Grandvuillemin L, Bourguet W

PDB-7zub:
Cryo-EM structure of the indirubin-bound Hsp90-XAP2-AHR complex
Method: single particle / : Gruszczyk J, Savva CG, Lai-Kee-Him J, Bous J, Ancelin A, Kwong HS, Grandvuillemin L, Bourguet W

EMDB-10535:
Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
Method: single particle / : Oerum S, Dendooven T

EMDB-10543:
RNase M5 bound to 50S ribosome with precursor 5S rRNA
Method: single particle / : Oerum S, Dendooven T

PDB-6tnn:
Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
Method: single particle / : Oerum S, Dendooven T, Gilet L, Catala M, Degut C, Trinquier A, Barraud P, Luisi B, Condon C, Tisne C

PDB-6tpq:
RNase M5 bound to 50S ribosome with precursor 5S rRNA
Method: single particle / : Oerum S, Dendooven T, Gilet L, Catala M, Degut C, Trinquier A, Barraud P, Luisi B, Condon C, Tisne C

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more