[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 54 items for (author: bess & j)

EMDB-54888:
The cryo-EM structure of human Tissue Nonspecific Alkaline Phosphatase (hTNAP) in complex with MLS-0038949
Method: single particle / : Imam I, Coureux PD, Ballut L

EMDB-44910:
M1A Midnolin-Proteasome (with Ubl)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44927:
M2A Midnolin-Proteasome (translocating)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44928:
M2A Midnolin Proteasome (translocating, focused on PSMD2)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44929:
M2B Midnolin-Proteasome (translocating)
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-44930:
M1B Midnolin-Proteasome
Method: single particle / : Gao J, Yip MCJ, Shao S

PDB-9bui:
M1A Midnolin-Proteasome (with Ubl)
Method: single particle / : Gao J, Yip MCJ, Shao S

PDB-9bv1:
M2A Midnolin-Proteasome (translocating)
Method: single particle / : Gao J, Yip MCJ, Shao S

PDB-9bv2:
M2B Midnolin-Proteasome (translocating)
Method: single particle / : Gao J, Yip MCJ, Shao S

PDB-9bv3:
M1B Midnolin-Proteasome
Method: single particle / : Gao J, Yip MCJ, Shao S

EMDB-45831:
CryoEM Structure of the human full length NAD Kinase
Method: single particle / : Li Y, Chen Z, Labesse G, Hoxhaj G

EMDB-45832:
CryoEM Structure of the C-terminally truncated form of human NAD Kinase
Method: single particle / : Li Y, Chen Z, Mary C, Labesse G, Hoxhaj G

EMDB-45856:
CryoEM Structure of the C-terminally truncated form of human NAD Kinase bound to NAD
Method: single particle / : Li Y, Chen Z, Mary C, Labesse G, Hoxhaj G

PDB-9cr3:
CryoEM Structure of the human full length NAD Kinase
Method: single particle / : Li Y, Chen Z, Labesse G, Hoxhaj G

PDB-9cr4:
CryoEM Structure of the C-terminally truncated form of human NAD Kinase
Method: single particle / : Li Y, Chen Z, Mary C, Labesse G, Hoxhaj G

PDB-9cra:
CryoEM Structure of the C-terminally truncated form of human NAD Kinase bound to NAD
Method: single particle / : Li Y, Chen Z, Mary C, Labesse G, Hoxhaj G

EMDB-16512:
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Method: single particle / : Bufton JC, Capin J, Boruku U, Garzoni F, Schaffitzel C, Berger I

EMDB-16522:
Structure of ADDoCoV-ADAH11
Method: single particle / : Yadav KNS, Buzas D, Berger-Schaffitzel C, Berger I

PDB-8c9n:
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Method: single particle / : Bufton JC, Capin J, Boruku U, Garzoni F, Schaffitzel C, Berger I

EMDB-29292:
HIV-1 envelope trimer bound to one CD4 molecule on membranes
Method: subtomogram averaging / : Li W, Qin Z, Nand E, Grunst MW, Grover JR, Uchil PD, Mothes W

EMDB-29293:
HIV-1 envelope trimer bound to two CD4 molecules on membranes
Method: subtomogram averaging / : Li W, Qin Z, Nand E, Grunst MW, Grover JR, Uchil PD, Mothes W

EMDB-29294:
HIV-1 envelope trimer bound to three CD4 molecules on membranes
Method: subtomogram averaging / : Li W, Qin Z, Nand E, Grunst MW, Grover JR, Uchil PD, Mothes W

EMDB-29295:
Consensus structure of HIV-1 envelope trimer bound to CD4 receptors on membranes
Method: subtomogram averaging / : Li W, Qin Z, Nand E, Grunst MW, Grover JR, Uchil PD, Mothes W

EMDB-41045:
Unliganded HIV-1 Env on virion
Method: subtomogram averaging / : Li W, Qin Z, Nand E, Grunst MW, Grover JR, Uchil PD, Mothes W

EMDB-27735:
Cryo-EM structure of SIVmac239 SOS-2P Env trimer in complex with human bNAb PGT145
Method: single particle / : Gorman J, Kwong PD

PDB-8dvd:
Cryo-EM structure of SIVmac239 SOS-2P Env trimer in complex with human bNAb PGT145
Method: single particle / : Gorman J, Kwong PD

EMDB-27718:
SIV E660.CR54 SOS-2P Env Trimer with ITS92.02
Method: single particle / : Gorman J, Kwong PD

PDB-8dua:
SIV E660.CR54 SOS-2P Env Trimer with ITS92.02
Method: single particle / : Gorman J, Kwong PD

EMDB-25062:
In-situ structure of SIV trimer
Method: subtomogram averaging / : Gorman J, Wang CY, Mason RD, Nazzari AF, Welles H, Zhou TQ, Jr JB, Tsybovsky Y, Verardi R, Yang YP, Zhang BS, Lifson JD, Liu J, Roederer M, Kwong PD

EMDB-25063:
in situ SIVmac239-Env trimers on the surface of AT-2-inactivated virions
Method: subtomogram averaging / : Liu J, Wang CY

EMDB-25064:
in situ SIVmac239-Env trimers on the surface of AT-2-inactivated virions
Method: subtomogram averaging / : Liu J, Wang CY

EMDB-25065:
In-situ structure of SIVmac239-Env trimers with ITS90.03 associated
Method: subtomogram averaging / : Liu J, Wang CY

EMDB-14571:
Negative stain 3D structure of the plastid-encoded RNA polymerase from Sinapis alba
Method: single particle / : Effantin G, Fenel D

EMDB-27631:
SIV mac239 SOS-2P K169T Env trimer with bNAb PGT145 and jacalin
Method: single particle / : Gorman J, Kwong PD

EMDB-26608:
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 in complex with antibody 41 - Upright conformation
Method: single particle / : Jenni S, Zongli L, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC

EMDB-26609:
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 - Reversed conformation
Method: single particle / : Jenni S, Zongli L, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC

PDB-7ums:
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 in complex with antibody 41 - Upright conformation
Method: single particle / : Jenni S, Zongli L, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC

PDB-7umt:
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 - Reversed conformation
Method: single particle / : Jenni S, Zongli L, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC

EMDB-12158:
CryoEM structure of Mycobacterium tuberculosis UMP Kinase (UMPK) in complex with UDP and UTP
Method: single particle / : Bous J, Trapani S

PDB-7bes:
CryoEM structure of Mycobacterium tuberculosis UMP Kinase (UMPK) in complex with UDP and UTP
Method: single particle / : Bous J, Trapani S, Walter P, Bron P, Munier-Lehmann H

EMDB-32033:
14pf microtubule decorated with EML1-GFP
Method: helical / : Bangera M, Sirajuddin M

EMDB-21411:
HIV envelope glycoprotein bound with soluble CD4 (D1-D2) and antibody 17b on AT-2 treated BaL strain virus
Method: subtomogram averaging / : Jun L, Ze L, Li W

EMDB-21412:
Ligand-free HIV envelope glycoprotein on AT-2 treated BaL strain virus
Method: subtomogram averaging / : Jun L, Ze L, Li W

EMDB-21413:
HIV envelope glycoprotein bound with antibodies 10-1074 and 3BNC117 on AT-2 treated BaL strain virus
Method: subtomogram averaging / : Jun L, Ze L, Li W

EMDB-2069:
Octameric structure of IMPDH from Pseudomonas aeruginosa in its APO form
Method: single particle / : Labesse G, Vaupre L, Salard-Arnaud I, Alexandre T, Lai Kee Him J, Raynal B, Bron P, Munier-Lehmann H

EMDB-2070:
Octameric structure of IMPDH from Pseudomonas aeruginosa in presence of Mg-ATP
Method: single particle / : Labesse G, Vaupre L, alard-Arnaud I, Alexandre T, Lai Kee Him J, Raynal B, Bron P, Munier-Lehmann H

EMDB-1846:
Human native spliceosomal C complex assembled on PM5 pre-mRNA.
Method: single particle / : Golas MM, Sander B, Bessonov S, Grote M, Wolf E, Kastner B, Stark H, Luhrmann R

EMDB-1847:
Human 35S U5 snRNP
Method: single particle / : Golas MM, Sander B, Bessonov S, Grote M, Wolf E, Kastner B, Stark H, Luhrmann R

EMDB-1848:
High salt resistant human spliceosomal C complex core
Method: single particle / : Golas MM, Sander B, Bessonov S, Grote M, Wolf E, Kastner B, Stark H, Luhrmann R

EMDB-5272:
Molecular Structure of Unliganded Native SIVmneE11S gp120 trimer: Spike region
Method: subtomogram averaging / : White TA, Bartesaghi A, Borgnia M, Subramaniam S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more