[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 152 items for (author: berry & r)

EMDB-56543:
Lid-engaged Complex: BAM bound BepA with lid engaged in membrane
Method: single particle / : Fenn KL, Ranson NA

EMDB-56549:
Poised Complex: BAM bound BepA
Method: single particle / : Fenn KL, Ranson NA

EMDB-56550:
Encounter Complex: BAM bound BepA
Method: single particle / : Fenn KL, Ranson NA

EMDB-56559:
Poised Complex: BAM bound BepA
Method: single particle / : Fenn KL, Ranson NA

PDB-28jl:
Lid-engaged Complex: BAM bound BepA with lid engaged in membrane
Method: single particle / : Fenn KL, Ranson NA

PDB-28jq:
Poised Complex: BAM bound BepA
Method: single particle / : Fenn KL, Ranson NA

PDB-28jr:
Encounter Complex: BAM bound BepA
Method: single particle / : Fenn KL, Ranson NA

PDB-28ju:
Poised Complex: BAM bound BepA
Method: single particle / : Fenn KL, Ranson NA

EMDB-58347:
C. difficile phage phiCD508 tail tube in spontaneously contracted state
Method: helical / : Bullough PA, Wilson JS, Berry HL, Fagan RP

EMDB-58348:
C. difficile phage phiCD508 tail sheath in spontaneously contracted state
Method: helical / : Bullough PA, Wilson JS, Berry HL, Fagan RP

EMDB-58350:
Extended tail of C. difficile phage phiCD508 subjected to 3D variability analysis
Method: helical / : Bullough PA, Wilson JS, Berry HL, Fagan RP

PDB-31es:
C. difficile phage phiCD508 tail tube in spontaneously contracted state
Method: helical / : Bullough PA, Wilson JS, Berry HL, Fagan RP

PDB-31eu:
C. difficile phage phiCD508 tail sheath in spontaneously contracted state
Method: helical / : Bullough PA, Wilson JS, Berry HL, Fagan RP

PDB-31ev:
Extended tail of C. difficile phage phiCD508 subjected to 3D variability analysis
Method: helical / : Bullough PA, Wilson JS, Berry HL, Fagan RP

EMDB-76165:
Nipah virus fusion protein with 20G7 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P

EMDB-76168:
Nipah virus fusion protein ectodomain in complex with 8C7 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P

EMDB-76170:
Hendra virus fusion protein ectodomain in complex with 9A9 antibody fab
Method: single particle / : May AJ, Liu K, Acharya P

EMDB-68793:
Vpb4Aa2 pore complex in C1 symmetry
Method: single particle / : Wirawan R, Spicer BA, Lupton CJ, Venugopal H, Berry C, Dunstone MA

EMDB-71647:
Vpb4Aa2 pore complex in C7 symmetry
Method: single particle / : Wirawan R, Spicer BA, Lupton CJ, Venugopal H, Berry C, Dunstone MA

PDB-22zo:
Single full-length subunit of the Vpb4Aa2 pore complex
Method: single particle / : Wirawan R, Lupton CJ, Venugopal H, Berry C, Dunstone MA, Spicer BA

PDB-9phf:
Vpb4Aa2 pore complex in C7 symmetry
Method: single particle / : Wirawan R, Spicer BA, Lupton CJ, Venugopal H, Berry C, Dunstone MA

PDB-9nz0:
Cryo-EM structure of vaccine elicited antibody 22F5 bound to the post-fusion conformation of the LayV-F glycoprotein
Method: single particle / : Kumar U, May A, Acharya P

EMDB-48715:
Cryo-EM map of vaccine elicited antibody 22F5 bound to post-fusion conformation of Langya virus F protein
Method: single particle / : Kumar U, Acharya P

EMDB-49948:
Cryo-EM structure of antibody 22F5 in complex with pre-fusion stabilized LayV-F
Method: single particle / : May AJ, Kumar U, Acharya P

PDB-9nz2:
Cryo-EM structure of antibody 22F5 in complex with pre-fusion stabilized LayV-F
Method: single particle / : May AJ, Kumar U, Acharya P

EMDB-71611:
Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) in NTP-bound elongation state
Method: single particle / : Cao D, Chen Z, Gao Y, Roesler C, Gooneratne I, Liang B

EMDB-71612:
Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) in pre-reaction elongation state
Method: single particle / : Cao D, Chen Z, Gao Y, Roesler C, Gooneratne I, Liang B

EMDB-71613:
Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) in pre-translocation elongation state
Method: single particle / : Cao D, Chen Z, Gao Y, Roesler C, Gooneratne I, Liang B

EMDB-71614:
Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) in post-translocation elongation state
Method: single particle / : Cao D, Chen Z, Gao Y, Roesler C, Gooneratne I, Liang B

PDB-9pfr:
Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) in NTP-bound elongation state
Method: single particle / : Cao D, Chen Z, Gao Y, Roesler C, Gooneratne I, Liang B

PDB-9pfs:
Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) in pre-reaction elongation state
Method: single particle / : Cao D, Chen Z, Gao Y, Roesler C, Gooneratne I, Liang B

PDB-9pft:
Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) in pre-translocation elongation state
Method: single particle / : Cao D, Chen Z, Gao Y, Roesler C, Gooneratne I, Liang B

PDB-9pfu:
Cryo-EM structure of the respiratory syncytial virus polymerase (L:P) in post-translocation elongation state
Method: single particle / : Cao D, Chen Z, Gao Y, Roesler C, Gooneratne I, Liang B

EMDB-53029:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

PDB-9qdl:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

EMDB-53030:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II WITH THE INHIBITOR BIXAFEN
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

PDB-9qdm:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II WITH THE INHIBITOR BIXAFEN
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

EMDB-48423:
Angavokely virus (AngV) fusion (F) protein ectodomain in pre-fusion conformation
Method: single particle / : Lella M, Acharya P

EMDB-48535:
AngV-F Pre-fusion Protein
Method: single particle / : Lella M, Acharya P

PDB-9mnh:
Angavokely virus (AngV) fusion (F) protein ectodomain in pre-fusion conformation
Method: single particle / : Lella M, Acharya P

PDB-9mqn:
AngV-F Pre-fusion Protein
Method: single particle / : Lella M, Acharya P

EMDB-18948:
Zorya anti-bacteriophage defense system ZorC WT
Method: single particle / : Hu H, Taylor NMI

PDB-8r68:
Zorya anti-bacteriophage defense system ZorC WT
Method: single particle / : Hu H, Taylor NMI

EMDB-18747:
Zorya anti-bacteriophage defense system ZorD apo form
Method: single particle / : Hu H, Taylor NMI

EMDB-18750:
Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S
Method: single particle / : Hu H, Taylor NMI

EMDB-18751:
Zorya anti-bacteriophage defense system ZorAB
Method: single particle / : Hu H, Taylor NMI

EMDB-18752:
EcZorAB_WT ZorB PGBDs Local refinement
Method: single particle / : Haidai H, Nicholas MIT

EMDB-18754:
Zorya anti-bacteriophage defense system ZorAB ZorA E86A_E89A, Calcium binding site mutation
Method: single particle / : Hu H, Taylor NMI

EMDB-18756:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_359-592, ZorA tail middle deletion.
Method: single particle / : Hu H, Taylor NMI

EMDB-18766:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_435-729, ZorA tail tip deletion.
Method: single particle / : Hu H, Taylor NMI

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more