[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 117 items for (author: becker & je)

EMDB-41441:
CryoEM structure of H7 hemagglutinin from A/Shanghai2/2013 H7N9 in complex with a human neutralizing antibody H7.HK2
Method: single particle / : Morano NC, Becker JE, Wu X, Shapiro L

EMDB-29725:
Vaccine-elicited human antibody 2C06 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Morano NC, Shapiro L, Kwong PD

EMDB-29731:
Vaccine-elicited human antibody 2C09 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Kwong PD

PDB-8g4m:
Vaccine-elicited human antibody 2C06 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Morano NC, Shapiro L, Kwong PD

PDB-8g4t:
Vaccine-elicited human antibody 2C09 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Kwong PD

EMDB-17154:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (consensus and constituent map 1)
Method: single particle / : Stoos L, Michael AK, Kempf G, Cavadini S, Thoma NH

EMDB-17155:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 1)
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma NH

EMDB-17156:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 2)
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma NH

EMDB-17157:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (composite map)
Method: single particle / : Stoos L, Michael AK, Kempf G, Cavadini S, Thoma NH

EMDB-17158:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (constituent map 2 from additional focus classification on PAS domains)
Method: single particle / : Stoos L, Michael AK, Kempf G, Cavadini S, Thoma NH

EMDB-17159:
Cryo-EM map of MYC-MAX-OCT4-LIN28 complex
Method: single particle / : Michael AK, Kempf G, Cavadini S, Thoma NH

EMDB-17160:
Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma N

EMDB-17161:
Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 1)
Method: single particle / : Michael AK, Stoos L, Cavadini S, Kempf G

EMDB-17162:
MAX-MAX bound to a nucleosome at SHL+5.1 and SHL-6.9.
Method: single particle / : Stoos L, Kempf G, Kater L, Thoma NH

EMDB-17183:
OCT4 and MYC-MAX co-bound to a nucleosome
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma N

EMDB-17184:
MYC-MAX bound to a nucleosome at SHL+5.8
Method: single particle / : Stoos L, Michael AK, Kempf G, Kater L, Cavadini S, Thoma N

PDB-8osj:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 1)
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma NH

PDB-8osk:
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (composite map)
Method: single particle / : Stoos L, Michael AK, Kempf G, Cavadini S, Thoma NH

PDB-8osl:
Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma N

PDB-8ots:
OCT4 and MYC-MAX co-bound to a nucleosome
Method: single particle / : Michael AK, Stoos L, Kempf G, Cavadini S, Thoma N

PDB-8ott:
MYC-MAX bound to a nucleosome at SHL+5.8
Method: single particle / : Stoos L, Michael AK, Kempf G, Kater L, Cavadini S, Thoma N

EMDB-15592:
BA.4/5 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

PDB-8aqw:
BA.4/5 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15588:
BA.4/5 SARS-CoV-2 Spike bound to human ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15589:
Beta SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15590:
BA.1 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15591:
BA.2.12.1 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

PDB-8aqs:
BA.4/5 SARS-CoV-2 Spike bound to human ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

PDB-8aqt:
Beta SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

PDB-8aqu:
BA.1 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

PDB-8aqv:
BA.2.12.1 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15541:
Beta SARS-CoV-2 Spike bound to mouse ACE2 (two up, full)
Method: single particle / : Ni D, Lau K, Turelli P, Beckert B, Nazarov S, Myasnikov A, Trono D, Stahlberg H, Pojer F, Uchikawa E

EMDB-15580:
BA.1 SARS-CoV-2 Spike bound to mouse ACE2 (two up, full)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15581:
BA.1 SARS-CoV-2 Spike bound to mouse ACE2 (three up, full)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15584:
BA.2.12.1 SARS-CoV-2 Spike bound to mouse ACE2 (two up, full)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15585:
BA.2.12.1 SARS-CoV-2 Spike bound to mouse ACE2 (three up, full)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15586:
BA.4/5 SARS-CoV-2 Spike bound to mouse ACE2 (two up, full)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15587:
BA.4/5 SARS-CoV-2 Spike bound to human ACE2 (three up, full)
Method: single particle / : Lau K, Ni D, Beckert B, Nazarov S, Myasnikov A, Pojer F, Stahlberg H, Uchikawa E

EMDB-15905:
Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
Method: single particle / : Koller TO, Graf M, Wilson DN

PDB-8b7y:
Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
Method: single particle / : Koller TO, Graf M, Wilson DN

EMDB-14121:
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Method: single particle / : Koller TO, Beckert B, Wilson DN

PDB-7qq3:
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Method: single particle / : Koller TO, Beckert B, Wilson DN

EMDB-14087:
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD and NTD (Local)
Method: single particle / : Ni D, Lau K, Turelli P, Beckert B, Nazarov S, Pojer F, Myasnikov A, Stahlberg H, Trono D

PDB-7qo9:
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD and NTD (Local)
Method: single particle / : Ni D, Lau K, Turelli P, Beckert B, Nazarov S, Pojer F, Myasnikov A, Stahlberg H, Trono D

EMDB-14086:
SARS-CoV-2 S Omicron Spike B.1.1.529
Method: single particle / : Ni D, Lau K, Turelli P, Beckert B, Nazarov S, Pojer F, Myasnikov A, Stahlberg H, Trono D

PDB-7qo7:
SARS-CoV-2 S Omicron Spike B.1.1.529
Method: single particle / : Ni D, Lau K, Turelli P, Beckert B, Nazarov S, Pojer F, Myasnikov A, Stahlberg H, Trono D

EMDB-11096:
Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
Method: single particle / : Wells JN, Buschauer R

EMDB-11097:
Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
Method: single particle / : Wells JN, Buschauer R

EMDB-11098:
Cryo-EM structure of human CCDC124 bound to 80S ribosomes
Method: single particle / : Wells JN, Buschauer R

EMDB-11099:
Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1
Method: single particle / : Wells JN, Buschauer R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more