[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 483 items for (author: baker & at)

EMDB-71415:
Yeast Respiratory SuperComplex - deltaQCR6
Method: single particle / : Baker ML

EMDB-71416:
Yeast Respiratory SuperComplex - non uniform refinement
Method: single particle / : Baker ML

EMDB-45969:
Local refinement of the SARS-CoV-2 BA.2.86 RBD in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-45971:
Local refinement of the SARS-CoV-2 BA.2.86 NTD
Method: single particle / : Lee J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-45972:
SARS-CoV-2 BA.2.86 Spike trimer in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9cwp:
Local refinement of the SARS-CoV-2 BA.2.86 RBD in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9cwq:
Local refinement of the SARS-CoV-2 BA.2.86 NTD
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9cwr:
SARS-CoV-2 BA.2.86 Spike trimer in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-74281:
C. elegans PEZO-1 Isoform G
Method: single particle / : Bell B, Baker ML, Vasquez V

EMDB-74283:
C. elegans PEZO-1 Isoform K
Method: single particle / : Bell B, Baker ML, Vasquez V

PDB-9zis:
C. elegans PEZO-1 Isoform G
Method: single particle / : Bell B, Baker ML, Vasquez V

PDB-9zit:
C. elegans PEZO-1 Isoform K
Method: single particle / : Bell B, Baker ML, Vasquez V

EMDB-74433:
Low-resolution electron density map of C. elegans PEZO-1 Isoform L
Method: single particle / : Bell B, Vasquez V

EMDB-49252:
In-situ structure of the flagellar motor of Campylobacter jejuni fcpMNO deletion mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-49253:
In-situ structure of the flagellar motor of Campylobacter jejuni pflD deletion mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-49254:
In-situ structure of the flagellar motor of Campylobacter jejuni flgY deletion mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-49255:
In-situ structure of the flagellar motor of Campylobacter jejuni pflB deletion mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-49256:
In-situ structure of the flagellar motor of Campylobacter jejuni pflA deletion mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-49257:
In-situ structure of the flagellar motor of Campylobacter jejuni rpoN deletion mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-49325:
In-situ structure of the flagellar motor of Campylobacter jejuni pflC deletion mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-53655:
Human Adenovirus D 10 Fiber Shaft by Focussed Refinement
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, T Young M, Parker AL, Bhella D

EMDB-53736:
Human Adenovirus D 10 Capsid Structure
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, Young MT, Parker AL, Bhella D

PDB-9r78:
Human Adenovirus D 10 Capsid Structure
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, Young MT, Parker AL, Bhella D

EMDB-53716:
Hexahistidine-tagged tobacco mosaic virus coat protein 3-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-53717:
Hexahistidine-tagged tobacco mosaic virus coat protein 4-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-53718:
Hexahistidine-tagged tobacco mosaic virus coat protein 5-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-53720:
Hexahistidine-tagged tobacco mosaic virus coat protein 6-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-72471:
His-tagged beta galactosidase (LacZ) on a Ni-NTA lipid monolayer grid
Method: single particle / : Baker RW, Strauss JD

PDB-9y45:
His-tagged beta galactosidase (LacZ) on a Ni-NTA lipid monolayer grid
Method: single particle / : Baker RW, Strauss JD

EMDB-49373:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

EMDB-49405:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1
Method: single particle / : Borst AJ, Weidle C

PDB-9nfu:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

PDB-9nh7:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1.
Method: single particle / : Borst AJ, Weidle C

EMDB-72472:
Human nucleosome structure on Nickel-NTA lipid affinity grid (C2 refinement)
Method: single particle / : Baker RW, Strauss JD, McGinty RK, Skrajna A

EMDB-72473:
Human nucleosome structure on Nickel-NTA lipid affinity grid (C1 refinement)
Method: single particle / : Baker RW, Strauss JD, McGinty RK, Skrajna A

EMDB-72474:
Sro7 bound to His-Exo84 (1-326) on a Nickel-NTA lipid monolayer
Method: single particle / : Baker RW, Strauss JD, McGinty RK

PDB-9y46:
Human nucleosome structure on Nickel-NTA lipid affinity grid (C2 refinement)
Method: single particle / : Baker RW, Strauss JD, McGinty RK, Skrajna A

PDB-9y47:
Human nucleosome structure on Nickel-NTA lipid affinity grid (C1 refinement)
Method: single particle / : Baker RW, Strauss JD, McGinty RK, Skrajna A

PDB-9y48:
Sro7 bound to His-Exo84 (1-326) on a Nickel-NTA lipid monolayer
Method: single particle / : Baker RW, Strauss JD

EMDB-48424:
CGRP Receptor in complex with dC2_050
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

PDB-9mni:
CGRP Receptor in complex with dC2_050
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

EMDB-47340:
De novo calcium channel hexamer, CalC6_3 with DHR extensions
Method: single particle / : Weidle C, Liu Y, Borst AJ

EMDB-47356:
De novo calcium channel heptamer, CalC6_3 with DHR extensions. Off target multimerization state
Method: single particle / : Weidle C, Liu Y, Borst AJ

PDB-9dzw:
De novo calcium channel hexamer, CalC6_3 with DHR extensions
Method: single particle / : Weidle C, Liu Y, Borst AJ

PDB-9e0h:
De novo calcium channel heptamer, CalC6_3 with DHR extensions. Off target multimerization state
Method: single particle / : Weidle C, Liu Y, Borst AJ

EMDB-47031:
Insulin receptor bound with de novo designed agonist called "RF-405".
Method: single particle / : Bai XC

EMDB-47041:
Insulin receptor bound with de novo designed agonist called "S2-F1-S1"
Method: single particle / : Bai XC

EMDB-47043:
Insulin receptor in complex with both insulin and de novo designed site-2 binder "S2B".
Method: single particle / : Bai XC

PDB-9dn6:
Insulin receptor bound with de novo designed agonist called "RF-405".
Method: single particle / : Bai XC

PDB-9dni:
Insulin receptor bound with de novo designed agonist called "S2-F1-S1"
Method: single particle / : Bai XC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more