[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 78 items for (author: asarnow & d)

EMDB-45969:
Local refinement of the SARS-CoV-2 BA.2.86 RBD in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-45971:
Local refinement of the SARS-CoV-2 BA.2.86 NTD
Method: single particle / : Lee J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-45972:
SARS-CoV-2 BA.2.86 Spike trimer in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9cwp:
Local refinement of the SARS-CoV-2 BA.2.86 RBD in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9cwq:
Local refinement of the SARS-CoV-2 BA.2.86 NTD
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9cwr:
SARS-CoV-2 BA.2.86 Spike trimer in complex with TRI2-2 minibinder
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-49635:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosomal subunit (local refinement of the 40S body)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-49636:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-49637:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (consensus map)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9npx:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosomal subunit (local refinement of the 40S body)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9npy:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-45253:
Merbecovirus MOW15-22 Spike glycoprotein RBD bound to the P. davyi ACE2
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9c6o:
Merbecovirus MOW15-22 Spike glycoprotein RBD bound to the P. davyi ACE2
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-46691:
Merbecovirus PnNL2018B Spike glycoprotein RBD bound to the P. Nathusii ACE2
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9dak:
Merbecovirus PnNL2018B Spike glycoprotein RBD bound to the P. Nathusii ACE2
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-60483:
Cryo-EM structure of P.nat ACE2 mutant in complex with MOW15-22 RBD
Method: single particle / : Tang J, Deng Z

PDB-8zuf:
Cryo-EM structure of P.nat ACE2 mutant in complex with MOW15-22 RBD
Method: single particle / : Tang J, Deng Z

EMDB-44103:
Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the PD33 antibody Fab fragment and the Kappa light chain nanobody
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-46804:
PDCoV S trimer bound by three copies of PD41 Fab
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-46805:
PDCoV S RBD bound to PD41 Fab (local refinement)
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-46806:
PDCoV S SD2018/300 Apo (Class I)
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D, Center for Structural Genomics of Infectious Diseases (CSGID)

EMDB-46814:
PDCoV S SD2018/300 with one PD41 Fab bound (Class II)
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D, Center for Structural Genomics of Infectious Diseases (CSGID)

EMDB-46815:
PDCoV S SD2018/300 with one PD41 Fab bound (Class III)
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D, Center for Structural Genomics of Infectious Diseases (CSGID)

EMDB-46816:
PDCoV S SD2018/300 with two PD41 Fabs bound (Class IV)
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D, Center for Structural Genomics of Infectious Diseases (CSGID)

PDB-9b2c:
Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the PD33 antibody Fab fragment and the Kappa light chain nanobody
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9dez:
PDCoV S trimer bound by three copies of PD41 Fab
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9df0:
PDCoV S RBD bound to PD41 Fab (local refinement)
Method: single particle / : Asarnow D, Rexhepaj M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-42275:
RORC mRNA 3'UTR riboswitch class A
Method: single particle / : Asarnow D, Khoroshkin M, Goodarzi H, Cheng Y

EMDB-42276:
RORC mRNA 3'UTR riboswitch class B
Method: single particle / : Asarnow D, Khoroshkin M, Goodarzi H, Cheng Y

EMDB-42277:
RORC mRNA 3'UTR riboswitch class C
Method: single particle / : Asarnow D, Khoroshkin M, Goodarzi H, Cheng Y

EMDB-42400:
RORC mRNA 3'UTR riboswitch A97G/G98A mutant class C
Method: single particle / : Asarnow D, Khoroshkin M, Goodarzi H, Cheng Y

EMDB-42401:
RORC mRNA 3'UTR riboswitch 77-GA mutant class A
Method: single particle / : Asarnow D, Khoroshkin M, Goodarzi H, Cheng Y

EMDB-42403:
RORC mRNA 3'UTR riboswitch 117-AC mutant class C
Method: single particle / : Asarnow D, Khoroshkin M, Goodarzi H, Cheng Y

EMDB-42404:
RORC mRNA 3'UTR riboswitch 117-AC mutant class B
Method: single particle / : Asarnow D, Khoroshkin M, Goodarzi H, Cheng Y

EMDB-43435:
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43436:
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43437:
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vq9:
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vqa:
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vqb:
Prefusion stabilized structure of the SARS-CoV-2 fusion machinery
Method: single particle / : Lee J, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-24614:
Cryo-EM structure of murine Dispatched 'R' conformation
Method: single particle / : Asarnow D, Wang Q

EMDB-24615:
Cryo-EM structure of murine Dispatched 'T' conformation
Method: single particle / : Asarnow D, Wang Q

EMDB-24616:
Cryo-EM structure of murine Dispatched NNN mutant
Method: single particle / : Asarnow D, Wang Q

EMDB-24617:
Cryo-EM structure of murine Dispatched in complex with Sonic hedgehog
Method: single particle / : Asarnow D, Wang Q

PDB-7rph:
Cryo-EM structure of murine Dispatched 'R' conformation
Method: single particle / : Asarnow D, Wang Q, Ding K, Cheng Y, Beachy PA

PDB-7rpi:
Cryo-EM structure of murine Dispatched 'T' conformation
Method: single particle / : Asarnow D, Wang Q, Ding K, Cheng Y, Beachy PA

PDB-7rpj:
Cryo-EM structure of murine Dispatched NNN mutant
Method: single particle / : Asarnow D, Wang Q, Ding K, Cheng Y, Beachy PA

PDB-7rpk:
Cryo-EM structure of murine Dispatched in complex with Sonic hedgehog
Method: single particle / : Asarnow D, Wang Q, Ding K, Cheng Y, Beachy PA

EMDB-22995:
Spike protein trimer
Method: single particle / : Asarnow D, Faust B, Bohn M, Bulkley D, Manglik A, Craik CS, Cheng Y

EMDB-23970:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more