[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 129 items for (author: aravind & l)

EMDB-50098:
Initial 3D Map of relaxosome complex with oriT DNA ds-27_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50099:
Initial 3D Map of relaxosome complex with oriT DNA ss-27_+8ds+9_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50102:
Initial 3D Map of relaxosome complex with oriT DNA ss-27_-8ds-7_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50103:
Initial 3D Map of relaxosome complex with oriT DNA ss-27_-13ds-12_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50104:
Initial 3D Map of relaxosome complex with oriT DNA ds-2_+113deltaTraM
Method: single particle / : Williams SM, Waksman G

EMDB-50105:
Initial 3D Map of relaxosome complex with oriT DNA ds-67_+113(poly-dT15-17_-3)deltaTraM
Method: single particle / : Williams SM, Waksman G

EMDB-50117:
CryoEM map of the F plasmid relaxosome in its pre-initiation state. ds-27_+143-R Locally-refined Map 3.76 A
Method: single particle / : Williams SM, Waksman G

EMDB-50118:
CryoEM map of the F plasmid relaxosome with TraI in its TE mode. ss-27_+8ds+9_+143-R Locally-refined 3.45 A Map
Method: single particle / : Williams SM, Waksman G

EMDB-50119:
CryoEM map of the F plasmid relaxosome with truncated TraI1-863 in its TE mode. ss-27_+8ds+9_+143-R_deltaAH+CTD Locally-refined 3.42 A Map
Method: single particle / : Williams SM, Waksman G

EMDB-50120:
CryoEM map of the F plasmid relaxosome with TraI in its TE mode, without accessory protein TraM. ss-27_+8ds+9_+143-R_deltaTraM Locally-refined 2.94 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-50121:
CryoEM map of the F plasmid relaxosome with oriT DNA ss-27_+3ds+4_+143 and TraI in its TE mode. ss-27_+3ds+4_+143-R Locally-refined 3.68 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-50122:
CryoEM map of the F plasmid relaxosome with oriT DNA ss-27_-3ds-2_+143 and TraI in its TE mode. ss-27_-3ds-2_+143-R Locally-refined 3.42 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-50131:
CryoEM map of the F plasmid relaxosome in its pre-initiation state. ds-27_+143-R Global Map 4.31 A.
Method: single particle / : Williams SM, Waksman G

EMDB-50132:
CryoEM map of the F plasmid relaxosome with truncated TraI1-863 in its TE mode. ss-27_+8ds+9_+143-R_deltaAH+CTD Global 3.93 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-50133:
CryoEM map of the F plasmid relaxosome with TraI in its TE mode, without the accessory protein TraM. ss-27_+8ds+9_+143-R_deltaTraM Global 3.11 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-53548:
CryoEM map of the F plasmid relaxosome with TraI in its TE mode. ss-27_+8ds+9_+143-R Global 3.77 A Map.
Method: single particle / : Williams SM, Waksman G

PDB-9f0x:
CryoEM structure of the F plasmid relaxosome in its pre-initiation state, derived from the ds-27_+143-R Locally-refined Map 3.76 A
Method: single particle / : Williams SM, Waksman G

PDB-9f0y:
CryoEM structure of the F plasmid relaxosome with TraI in its TE mode, derived from the ss-27_+8ds+9_+143-R Locally-refined 3.45 A Map.
Method: single particle / : Williams SM, Waksman G

PDB-9f0z:
CryoEM structure of the F plasmid relaxosome with truncated TraI1-863 in its TE mode, derived from the ss-27_+8ds+9_+143-R_deltaAH+CTD Locally-refined 3.42 A Map
Method: single particle / : Williams SM, Waksman G

PDB-9f10:
CryoEM structure of the F plasmid relaxosome with TraI in its TE mode, without accessory protein TraM. Derived from the ss-27_+8ds+9_+143-R_deltaTraM Locally-refined 2.94 A Map.
Method: single particle / : Williams SM, Waksman G

PDB-9f11:
CryoEM structure of the F plasmid relaxosome with oriT DNA ss-27_+3ds+4_+143 and TraI its TE mode, derived from ss-27_+3ds+4_+143-R Locally-refined 3.68 A Map.
Method: single particle / : Williams SM, Waksman G

PDB-9f12:
CryoEM structure of the F plasmid relaxosome with oriT DNA ss-27_-3ds-2_+143 and TraI its TE mode, derived from ss-27_-3ds-2_+143-R Locally-refined 3.42 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-51318:
Structure of the HrpA-bound E. coli disome, Class I
Method: single particle / : Esser HF, Berninghausen O, Becker T, Beckmann R

EMDB-51340:
Structure of the HrpA-bound E. coli disome, Class II
Method: single particle / : Esser HF, Berninghausen O, Becker T, Beckmann R

PDB-9gft:
Structure of the HrpA-bound E. coli disome, Class I
Method: single particle / : Esser HF, Berninghausen O, Becker T, Beckmann R

PDB-9ggr:
Structure of the HrpA-bound E. coli disome, Class II
Method: single particle / : Esser HF, Berninghausen O, Becker T, Beckmann R

EMDB-42794:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

EMDB-42795:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 in C1
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

EMDB-42796:
Magnesium transporter MgtA monomer from E. coli in 5 mM MgCl2
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

EMDB-42797:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ATP
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

EMDB-42798:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ATPyS
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

EMDB-42799:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ADP
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

PDB-8uy7:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

PDB-8uy8:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 in C1
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

PDB-8uy9:
Magnesium transporter MgtA monomer from E. coli in 5 mM MgCl2
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

PDB-8uya:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ATP
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

PDB-8uyb:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ATPyS
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

PDB-8uyc:
Magnesium transporter MgtA dimer from E. coli in 5 mM MgCl2 and 5 mM ADP
Method: single particle / : Zeinert R, Zhou F, Cavalcanti Franco PH, Zoeller J, Lessen H, Iyer A, Langer JD, Sodt AJ, Storz G, Matthies D

EMDB-44303:
Mycobacterium tuberculosis CoaX Homohexamer
Method: single particle / : Chen J, Ekiert DC, Bhabha G

EMDB-44304:
Mycobacterium tuberculosis CoaX Homotetramer
Method: single particle / : Chen J, Ekiert DC, Bhabha G

EMDB-45652:
Complex of M. smegmatis Dop with M. tuberculosis CoaX and Pup91 (Local Refine Map of Dop-Pup91)
Method: single particle / : Chen J, Ekiert DC, Bhabha G

EMDB-45653:
Complex of M. smegmatis Dop with M. tuberculosis CoaX and Pup91 (Consensus Map)
Method: single particle / : Chen J, Ekiert DC, Bhabha G

EMDB-45654:
Complex of M. smegmatis Dop with M. tuberculosis CoaX and Pup91 (Composite Map)
Method: single particle / : Chen J, Yoo JH, Ekiert DC, Bhabha G

PDB-9b78:
Mycobacterium tuberculosis CoaX Homohexamer
Method: single particle / : Chen J, Ekiert DC, Bhabha G

PDB-9b79:
Mycobacterium tuberculosis CoaX Homotetramer
Method: single particle / : Chen J, Ekiert DC, Bhabha G

PDB-9cku:
Complex of M. smegmatis Dop with M. tuberculosis CoaX and Pup91
Method: single particle / : Chen J, Yoo JH, Ekiert DC, Bhabha G

EMDB-34265:
CryoEM structure of human Pannexin isoform 3
Method: single particle / : Hussain N, Penmatsa A

EMDB-34266:
CryoEM structure of human Pannexin1 with R217H congenital mutation.
Method: single particle / : Hussain N, Penmatsa A

EMDB-34267:
Cryo-EM structure of human Pannexin1 resembling Pannexin2 pore with W74R/R75Dmutations
Method: single particle / : Hussain N, Penmatsa A

EMDB-34268:
human Pannexin1
Method: single particle / : Hussain N, Penmatsa A, Vinothkumar KR

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more