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Showing all 49 items for (author: agirrezabala & x)

EMDB-12636:
CspA-27 cotranslational folding intermediate 1
Method: single particle / : Agirrezabala X, Samatova E

EMDB-12928:
CspA-27 cotranslational folding intermediate 2
Method: single particle / : Agirrezabala X, Samatova E

EMDB-12929:
CspA-27 cotranslational folding intermediate 3
Method: single particle / : Agirrezabala X, Samatova E

EMDB-12930:
CspA-70 cotranslational folding intermediate 2
Method: single particle / : Agirrezabala X, Samatova E

EMDB-13055:
CspA-70 cotranslational folding intermediate 1
Method: single particle / : Agirrezabala X, Samatova E

PDB-7nww:
CspA-27 cotranslational folding intermediate 1
Method: single particle / : Agirrezabala X, Samatova E, Macher M, Liutkute M, Gil-Carton D, Novacek J, Valle M, Rodnina MV

PDB-7oif:
CspA-27 cotranslational folding intermediate 2
Method: single particle / : Agirrezabala X, Samatova E, Macher M, Liutkute M, Gil-Carton D, Novacek J, Valle M, Rodnina MV

PDB-7oig:
CspA-27 cotranslational folding intermediate 3
Method: single particle / : Agirrezabala X, Samatova E, Macher M, Liutkute M, Gil-Carton D, Novacek J, Valle M, Rodnina MV

PDB-7oii:
CspA-70 cotranslational folding intermediate 2
Method: single particle / : Agirrezabala X, Samatova E, Macher M, Liutkute M, Gil-Carton D, Novacek J, Valle M, Rodnina MV

PDB-7ot5:
CspA-70 cotranslational folding intermediate 1
Method: single particle / : Agirrezabala X, Samatova E, Macher M, Liutkute M, Gil-Carton D, Novacek J, Valle M, Rodnina MV

EMDB-3785:
Structure of Watermelon mosaic virus potyvirus.
Method: helical / : Zamora M, Mendez-Lopez E

PDB-5odv:
Structure of Watermelon mosaic virus potyvirus.
Method: helical / : Zamora M, Mendez-Lopez E, Agirrezabala X, Cuesta R, Lavin JL, Sanchez-Pina MA, Aranda M, Valle M

EMDB-3618:
Bypassing 70S ribosome
Method: single particle / : Agirrezabala X, Samatova E, Klimova M, Zamora M, Gil-Carton D, Rodnina M, Valle M

PDB-5np6:
70S structure prior to bypassing
Method: single particle / : Agirrezabala X, Samatova E, Klimova M, Zamora M, Gil-Carton D, Rodnina M, Valle M

PDB-5fn1:
Electron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus)
Method: single particle / : Agirrezabala X, Mendez-Lopez E, Lasso G, Sanchez-Pina MA, Aranda MA, Valle M

EMDB-3236:
Electron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus)
Method: helical / : Agirrezabala X, Mendez-Lopez E, Lasso G, Sanchez-Pina MA, Aranda MA, Valle M

PDB-4v6n:
Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6o:
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6p:
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6q:
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6r:
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6s:
Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6k:
Structural insights into cognate vs. near-cognate discrimination during decoding.
Method: single particle / : Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-4v6l:
Structural insights into cognate vs. near-cognate discrimination during decoding.
Method: single particle / : Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

EMDB-2373:
ribosome-RelA complex
Method: single particle / : Agirrezabala X, Fernandez I, Kelley A, Gil-Carton D, Ramakrishnan V, Valle M

EMDB-5359:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 4A (partially rotated (I) 70S ribosome with A-site and P-site tRNAs)
Method: single particle / : Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

EMDB-5360:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 3 (unrotated 70S ribosome with P-site tRNA)
Method: single particle / : Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

EMDB-5361:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 2 (unrotated 70S ribosome with A-site and P-site tRNAs)
Method: single particle / : Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

EMDB-5362:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 6 (rotated 70S ribosome with A-site and P-site tRNAs)
Method: single particle / : Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

EMDB-5363:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 5 (rotated 70S ribosome with A-site and P-site tRNAs)
Method: single particle / : Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

EMDB-5364:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 4B (partially rotated (II) 70S ribosome with A-site and P-site tRNAs)
Method: single particle / : Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

EMDB-1771:
30S Initiation Complex. 30S-IF1-IF2-IF3-tRNA-mRNA-GTP (after classification)
Method: single particle / : Julian P, Milon P, Agirrezabala X, Lasso G, Gil D, Rodnina MV, Valle M

EMDB-1770:
30S-002mRNA (after classification)
Method: single particle / : Julian P, Milon P, Agirrezabala X, Lasso G, Gil D, Rodnina MV, Valle M

EMDB-1849:
Cognate 70S-TC complex
Method: single particle / : Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

EMDB-1850:
Near-cognate 70S-TC complex
Method: single particle / : Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PDB-3izg:
Bacteriophage T7 prohead shell EM-derived atomic model
Method: single particle / : Ionel A, Velazquez-Muriel JA, Agirrezabala X, Luque D, Cuervo A, Caston JR, Valpuesta JM, Martin-Benito J, Carrascosa JL

EMDB-1564:
Recognition of Phe-tRNAPhe, Trp-tRNATrp and : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM
Method: single particle / : Li W, Agirrezabala X, Lei J, Bouakaz L, Brunelle JL, Ortiz-Meoz RF, Green R, Sanyal S, Ehrenberg M, Frank J

EMDB-1565:
Recognition of Phe-tRNAPhe, Trp-tRNATrp and : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM
Method: single particle / : Li W, Agirrezabala X, Lei J, Bouakaz L, Brunelle JL, Ortiz-Meoz RF, Green R, Sanyal S, Ehrenberg M, Frank J

EMDB-1541:
Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome
Method: single particle / : Agirrezabala X, Lei J, Brunelle JL, Ortiz-Meoz RF, Green R, Frank J

EMDB-1540:
Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome
Method: single particle / : Agirrezabala X, Lei J, Brunelle JL, Ortiz-Meoz RF, Green R, Frank J

PDB-3ep2:
Model of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EM
Method: single particle / : Frank J, Li W, Agirrezabala X

PDB-3eq3:
Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM
Method: single particle / : Frank J, Li W, Agirrezabala X

PDB-3eq4:
Model of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM
Method: single particle / : Frank J, Li W, Agirrezabala X

EMDB-1321:
Quasi-atomic model of bacteriophage t7 procapsid shell: insights into the structure and evolution of a basic fold.
Method: single particle / : Agirrezabala X, Velazquez-Muriel J, Gomez-Puertas P, Scheres S, Carazo JM, Carrascosa JL

EMDB-1231:
Structure of the connector of bacteriophage T7 at 8A resolution: structural homologies of a basic component of a DNA translocating machinery.
Method: single particle / : Agirrezabala X, Martin-Benito J, Valle M, Gonzalez JM, Valencia A, Valpuesta JM, Carrascosa JL

EMDB-1161:
Maturation of phage T7 involves structural modification of both shell and inner core components.
Method: single particle / : Agirrezabala X, Martin-Benito J, Caston JR, Miranda R, Valpuesta JM, Carrascosa JL

EMDB-1162:
Maturation of phage T7 involves structural modification of both shell and inner core components.
Method: single particle / : Agirrezabala X, Martin-Benito J, Caston JR, Miranda R, Valpuesta JM, Carrascosa JL

EMDB-1163:
Maturation of phage T7 involves structural modification of both shell and inner core components.
Method: single particle / : Agirrezabala X, Martin-Benito J, Caston JR, Miranda R, Valpuesta JM, Carrascosa JL

EMDB-1164:
Maturation of phage T7 involves structural modification of both shell and inner core components.
Method: single particle / : Agirrezabala X, Martin-Benito J, Caston JR, Miranda R, Valpuesta JM, Carrascosa JL

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New format data for meta-information of EMDB entries

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  • The previous official version 1.9 will be removed from the archive.

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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