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Showing all 49 items for (author: agirrezabala & x)
![](data/emdb/media/12636/snaps2.jpg)
EMDB-12636:
CspA-27 cotranslational folding intermediate 1
Method: single particle / : Agirrezabala X, Samatova E
![](data/emdb/media/12928/snaps2.jpg)
EMDB-12928:
CspA-27 cotranslational folding intermediate 2
Method: single particle / : Agirrezabala X, Samatova E
![](data/emdb/media/12929/snaps2.jpg)
EMDB-12929:
CspA-27 cotranslational folding intermediate 3
Method: single particle / : Agirrezabala X, Samatova E
![](data/emdb/media/12930/snaps2.jpg)
EMDB-12930:
CspA-70 cotranslational folding intermediate 2
Method: single particle / : Agirrezabala X, Samatova E
![](data/emdb/media/13055/snaps2.jpg)
EMDB-13055:
CspA-70 cotranslational folding intermediate 1
Method: single particle / : Agirrezabala X, Samatova E
![](data/pdb/media/7nww/snapsdep.jpg)
PDB-7nww:
CspA-27 cotranslational folding intermediate 1
Method: single particle / : Agirrezabala X, Samatova E, Macher M, Liutkute M, Gil-Carton D, Novacek J, Valle M, Rodnina MV
![](data/pdb/media/7oif/snapsdep.jpg)
PDB-7oif:
CspA-27 cotranslational folding intermediate 2
Method: single particle / : Agirrezabala X, Samatova E, Macher M, Liutkute M, Gil-Carton D, Novacek J, Valle M, Rodnina MV
![](data/pdb/media/7oig/snapsdep.jpg)
PDB-7oig:
CspA-27 cotranslational folding intermediate 3
Method: single particle / : Agirrezabala X, Samatova E, Macher M, Liutkute M, Gil-Carton D, Novacek J, Valle M, Rodnina MV
![](data/pdb/media/7oii/snapsdep.jpg)
PDB-7oii:
CspA-70 cotranslational folding intermediate 2
Method: single particle / : Agirrezabala X, Samatova E, Macher M, Liutkute M, Gil-Carton D, Novacek J, Valle M, Rodnina MV
![](data/pdb/media/7ot5/snapsdep.jpg)
PDB-7ot5:
CspA-70 cotranslational folding intermediate 1
Method: single particle / : Agirrezabala X, Samatova E, Macher M, Liutkute M, Gil-Carton D, Novacek J, Valle M, Rodnina MV
![](data/emdb/media/3785/snaps2.jpg)
EMDB-3785:
Structure of Watermelon mosaic virus potyvirus.
Method: helical / : Zamora M, Mendez-Lopez E
![](data/pdb/media/5odv/snapsdep.jpg)
PDB-5odv:
Structure of Watermelon mosaic virus potyvirus.
Method: helical / : Zamora M, Mendez-Lopez E, Agirrezabala X, Cuesta R, Lavin JL, Sanchez-Pina MA, Aranda M, Valle M
![](data/emdb/media/3618/snaps2.jpg)
EMDB-3618:
Bypassing 70S ribosome
Method: single particle / : Agirrezabala X, Samatova E, Klimova M, Zamora M, Gil-Carton D, Rodnina M, Valle M
![](data/pdb/media/5np6/snapsdep.jpg)
PDB-5np6:
70S structure prior to bypassing
Method: single particle / : Agirrezabala X, Samatova E, Klimova M, Zamora M, Gil-Carton D, Rodnina M, Valle M
![](data/pdb/media/5fn1/snaps1.jpg)
PDB-5fn1:
Electron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus)
Method: single particle / : Agirrezabala X, Mendez-Lopez E, Lasso G, Sanchez-Pina MA, Aranda MA, Valle M
![](data/emdb/media/3236/snaps2.jpg)
EMDB-3236:
Electron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus)
Method: helical / : Agirrezabala X, Mendez-Lopez E, Lasso G, Sanchez-Pina MA, Aranda MA, Valle M
![](data/pdb/media/4v6n/snapsdep.jpg)
PDB-4v6n:
Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/pdb/media/4v6o/snapsdep.jpg)
PDB-4v6o:
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/pdb/media/4v6p/snapsdep.jpg)
PDB-4v6p:
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/pdb/media/4v6q/snapsdep.jpg)
PDB-4v6q:
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/pdb/media/4v6r/snapsdep.jpg)
PDB-4v6r:
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/pdb/media/4v6s/snapsdep.jpg)
PDB-4v6s:
Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
Method: single particle / : Agirrezabala X, Liao H, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/pdb/media/4v6k/snapsdep.jpg)
PDB-4v6k:
Structural insights into cognate vs. near-cognate discrimination during decoding.
Method: single particle / : Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/pdb/media/4v6l/snapsdep.jpg)
PDB-4v6l:
Structural insights into cognate vs. near-cognate discrimination during decoding.
Method: single particle / : Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/emdb/media/2373/snaps2.jpg)
EMDB-2373:
ribosome-RelA complex
Method: single particle / : Agirrezabala X, Fernandez I, Kelley A, Gil-Carton D, Ramakrishnan V, Valle M
![](data/emdb/media/5359/snaps2.jpg)
EMDB-5359:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 4A (partially rotated (I) 70S ribosome with A-site and P-site tRNAs)
Method: single particle / : Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/emdb/media/5360/snaps2.jpg)
EMDB-5360:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 3 (unrotated 70S ribosome with P-site tRNA)
Method: single particle / : Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/emdb/media/5361/snaps2.jpg)
EMDB-5361:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 2 (unrotated 70S ribosome with A-site and P-site tRNAs)
Method: single particle / : Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/emdb/media/5362/snaps2.jpg)
EMDB-5362:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 6 (rotated 70S ribosome with A-site and P-site tRNAs)
Method: single particle / : Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/emdb/media/5363/snaps2.jpg)
EMDB-5363:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 5 (rotated 70S ribosome with A-site and P-site tRNAs)
Method: single particle / : Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/emdb/media/5364/snaps2.jpg)
EMDB-5364:
New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 4B (partially rotated (II) 70S ribosome with A-site and P-site tRNAs)
Method: single particle / : Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/emdb/media/1771/snaps2.jpg)
EMDB-1771:
30S Initiation Complex. 30S-IF1-IF2-IF3-tRNA-mRNA-GTP (after classification)
Method: single particle / : Julian P, Milon P, Agirrezabala X, Lasso G, Gil D, Rodnina MV, Valle M
![](data/emdb/media/1770/snaps2.jpg)
EMDB-1770:
30S-002mRNA (after classification)
Method: single particle / : Julian P, Milon P, Agirrezabala X, Lasso G, Gil D, Rodnina MV, Valle M
![](data/emdb/media/1849/snaps2.jpg)
EMDB-1849:
Cognate 70S-TC complex
Method: single particle / : Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/emdb/media/1850/snaps2.jpg)
EMDB-1850:
Near-cognate 70S-TC complex
Method: single particle / : Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
![](data/pdb/media/3izg/snaps1.jpg)
PDB-3izg:
Bacteriophage T7 prohead shell EM-derived atomic model
Method: single particle / : Ionel A, Velazquez-Muriel JA, Agirrezabala X, Luque D, Cuervo A, Caston JR, Valpuesta JM, Martin-Benito J, Carrascosa JL
![](data/emdb/media/1564/snaps2.jpg)
EMDB-1564:
Recognition of Phe-tRNAPhe, Trp-tRNATrp and : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM
Method: single particle / : Li W, Agirrezabala X, Lei J, Bouakaz L, Brunelle JL, Ortiz-Meoz RF, Green R, Sanyal S, Ehrenberg M, Frank J
![](data/emdb/media/1565/snaps2.jpg)
EMDB-1565:
Recognition of Phe-tRNAPhe, Trp-tRNATrp and : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM
Method: single particle / : Li W, Agirrezabala X, Lei J, Bouakaz L, Brunelle JL, Ortiz-Meoz RF, Green R, Sanyal S, Ehrenberg M, Frank J
![](data/emdb/media/1541/snaps2.jpg)
EMDB-1541:
Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome
Method: single particle / : Agirrezabala X, Lei J, Brunelle JL, Ortiz-Meoz RF, Green R, Frank J
![](data/emdb/media/1540/snaps2.jpg)
EMDB-1540:
Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome
Method: single particle / : Agirrezabala X, Lei J, Brunelle JL, Ortiz-Meoz RF, Green R, Frank J
![](data/pdb/media/3ep2/snapsdep.jpg)
PDB-3ep2:
Model of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EM
Method: single particle / : Frank J, Li W, Agirrezabala X
![](data/pdb/media/3eq3/snapsdep.jpg)
PDB-3eq3:
Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM
Method: single particle / : Frank J, Li W, Agirrezabala X
![](data/pdb/media/3eq4/snapsdep.jpg)
PDB-3eq4:
Model of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM
Method: single particle / : Frank J, Li W, Agirrezabala X
![](data/emdb/media/1321/snaps2.jpg)
EMDB-1321:
Quasi-atomic model of bacteriophage t7 procapsid shell: insights into the structure and evolution of a basic fold.
Method: single particle / : Agirrezabala X, Velazquez-Muriel J, Gomez-Puertas P, Scheres S, Carazo JM, Carrascosa JL
![](data/emdb/media/1231/snaps2.jpg)
EMDB-1231:
Structure of the connector of bacteriophage T7 at 8A resolution: structural homologies of a basic component of a DNA translocating machinery.
Method: single particle / : Agirrezabala X, Martin-Benito J, Valle M, Gonzalez JM, Valencia A, Valpuesta JM, Carrascosa JL
![](data/emdb/media/1161/snaps2.jpg)
EMDB-1161:
Maturation of phage T7 involves structural modification of both shell and inner core components.
Method: single particle / : Agirrezabala X, Martin-Benito J, Caston JR, Miranda R, Valpuesta JM, Carrascosa JL
![](data/emdb/media/1162/snaps2.jpg)
EMDB-1162:
Maturation of phage T7 involves structural modification of both shell and inner core components.
Method: single particle / : Agirrezabala X, Martin-Benito J, Caston JR, Miranda R, Valpuesta JM, Carrascosa JL
![](data/emdb/media/1163/snaps2.jpg)
EMDB-1163:
Maturation of phage T7 involves structural modification of both shell and inner core components.
Method: single particle / : Agirrezabala X, Martin-Benito J, Caston JR, Miranda R, Valpuesta JM, Carrascosa JL
![](data/emdb/media/1164/snaps2.jpg)
EMDB-1164:
Maturation of phage T7 involves structural modification of both shell and inner core components.
Method: single particle / : Agirrezabala X, Martin-Benito J, Caston JR, Miranda R, Valpuesta JM, Carrascosa JL