[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 64 items for (author: aggarwal & p)

EMDB-70721:
TMPRSS2 (S441A) bound to the HCoV-NL63 S2'region genetically fused to the HCoV-HKU1 RBD
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-70722:
TMPRSS2 S441A in complex with the H1H7 Fab and anti-kappa light chain nanobody
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-73656:
SARS-CoV-2 spike trimer in the early fusion intermediate conformation bound to the VN01H1 Fab (Fab local refinement)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-73657:
SARS-CoV-2 spike trimer in the early fusion intermediate conformation bound to the VN01H1 Fab (S2 local refinement)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-73786:
HCoV-NL63 S2' peptide bound to TMPRSS2 S441A (complexed with the H1H7 Fab and an anti-kappa-nanobody)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-73787:
SARS-CoV-2 S2 trimer stabilized in the early fusion intermediate conformation by circular permutation and clamping by gp41 (E-FICs-v1)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-75233:
SARS-CoV-2 spike trimer in the early fusion intermediate conformation bound to the VN01H1 Fab (global refinement)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-75694:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation (E-FICs-v3) bound to the VN01H1 Fab (Fab local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-75695:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation (E-FICs-v3) bound to the VN01H1 Fab (S2 local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-75705:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation (E-FICs-v3) bound to C77G12 (Fab local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-75721:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation (E-FICs-v3) bound to the VN01H1 Fab
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-75722:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation (E-FICs-v3) bound to C77G12 (global refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-11hk:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation (E-FICs-v3) bound to the VN01H1 Fab (Fab local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-11hl:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation (E-FICs-v3) bound to the VN01H1 Fab (S2 local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-11hw:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation (E-FICs-v3) bound to C77G12 (Fab local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9opq:
TMPRSS2 (S441A) bound to the HCoV-NL63 S2'region genetically fused to the HCoV-HKU1 RBD
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9opr:
TMPRSS2 S441A in complex with the H1H7 Fab and anti-kappa light chain nanobody
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9yyu:
SARS-CoV-2 spike trimer in the early fusion intermediate conformation bound to the VN01H1 Fab (Fab local refinement)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9yyv:
SARS-CoV-2 spike trimer in the early fusion intermediate conformation bound to the VN01H1 Fab (S2 local refinement)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9z3j:
HCoV-NL63 S2' peptide bound to TMPRSS2 S441A (complexed with the H1H7 Fab and an anti-kappa-nanobody)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9z3k:
SARS-CoV-2 S2 trimer stabilized in the early fusion intermediate conformation by circular permutation and clamping by gp41 (E-FICs-v1)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-75697:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation (E-FICs-v3) bound to C77G12 (S2 local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-11hn:
SARS-CoV-2 spike S2 trimer stabilized in the early fusion intermediate conformation (E-FICs-v3) bound to C77G12 (S2 local refinement)
Method: single particle / : McCallum M, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-52968:
Cryo-EM structure of the helicase core of ZNFX1
Method: single particle / : Grabarczyk DB, Reznikow V, Kurzbauer R, Clausen T

PDB-9q9z:
Cryo-EM structure of the helicase core of ZNFX1
Method: single particle / : Grabarczyk DB, Reznikow V, Kurzbauer R, Clausen T

EMDB-51289:
CryoEM structure of the human INO80 core- H2A.Z nucleosome complex
Method: single particle / : Aggarwal P, Sharma M, Hopfner KP

EMDB-51290:
CryoEM structure of the human INO80-Hexasome complex
Method: single particle / : Sharma M, Aggarwal P, Hopfner KP

EMDB-51294:
CryoEM structure of the human INO80-Hexasome complex
Method: single particle / : Aggarwal P, Sharma M, Hopfner KP

EMDB-51307:
CryoEM structure of the human INO80 core-nucleosome complex state N-6
Method: single particle / : Sharma M, Aggarwal P, Hopfner KP

EMDB-51310:
CryoEM structure of the human INO80 core-nucleosome complex state N-6
Method: single particle / : Sharma M, Aggarwal P, Hopfner KP

EMDB-51312:
CryoEM structure of the human INO80 core-nucleosome complex state N-7
Method: single particle / : Sharma M, Aggarwal P, Hopfner KP

EMDB-51313:
CryoEM structure of the human INO80 core-nucleosome complex state N-7
Method: single particle / : Sharma M, Aggarwal P, Hopfner KP

PDB-9ge4:
CryoEM structure of the human INO80 core- H2A.Z nucleosome complex
Method: single particle / : Aggarwal P, Sharma M, Hopfner KP

PDB-9ge5:
CryoEM structure of the human INO80-Hexasome complex
Method: single particle / : Sharma M, Aggarwal P, Hopfner KP

PDB-9gel:
CryoEM structure of the human INO80-Hexasome complex
Method: single particle / : Aggarwal P, Sharma M, Hopfner KP

PDB-9gev:
CryoEM structure of the human INO80 core-nucleosome complex state N-6
Method: single particle / : Sharma M, Aggarwal P, Hopfner KP

PDB-9gf6:
CryoEM structure of the human INO80 core-nucleosome complex state N-6
Method: single particle / : Sharma M, Aggarwal P, Hopfner KP

PDB-9gfb:
CryoEM structure of the human INO80 core-nucleosome complex state N-7
Method: single particle / : Sharma M, Aggarwal P, Hopfner KP

PDB-9gfm:
CryoEM structure of the human INO80 core-nucleosome complex state N-7
Method: single particle / : Sharma M, Aggarwal P, Hopfner KP

EMDB-51229:
CryoEM structure of the human INO80 core- H2A.Z nucleosome complex
Method: single particle / : Aggarwal P, Sharma M, Hopfner KP

PDB-9gcg:
CryoEM structure of the human INO80 core- H2A.Z nucleosome complex
Method: single particle / : Aggarwal P, Sharma M, Hopfner KP

EMDB-45803:
Structural basis of BAK sequestration by MCL-1 and consequences for apoptosis initiation
Method: single particle / : Uchikawa E, Myasnikov A, Dey R, Moldoveanu T

PDB-9cph:
Structural basis of BAK sequestration by MCL-1 and consequences for apoptosis initiation
Method: single particle / : Uchikawa E, Myasnikov A, Dey R, Moldoveanu T

EMDB-41371:
Cryo-EM structure of the Rev1-Polzeta-DNA-dCTP complex
Method: single particle / : Malik R, Aggarwal AK

EMDB-41372:
Cryo-EM structure of Rev1(deltaN)-Polzeta-DNA-dCTP complex
Method: single particle / : Malik R, Aggarwal AK

PDB-8tlq:
Cryo-EM structure of the Rev1-Polzeta-DNA-dCTP complex
Method: single particle / : Malik R, Aggarwal AK

PDB-8tlt:
Cryo-EM structure of Rev1(deltaN)-Polzeta-DNA-dCTP complex
Method: single particle / : Malik R, Aggarwal AK

EMDB-16144:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the macrocyclic peptide S1B3inL1
Method: single particle / : Hurdiss DL, Drulyte I

PDB-8bon:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the macrocyclic peptide S1B3inL1
Method: single particle / : Hurdiss DL

EMDB-24793:
Structure of DNA polymerase zeta with mismatched DNA
Method: single particle / : Malik R, Ubarretxena IB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more