[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 57 items for (author: adhav & v)

EMDB-73101:
Structure of AGO2 wedging RISC (wedg-RISC)
Method: single particle / : Zhang H, Adhav VA, Kehling AC, Nakanishi K

PDB-9ymb:
Structure of AGO2 wedging RISC (wedg-RISC)
Method: single particle / : Zhang H, Adhav VA, Kehling AC, Nakanishi K

EMDB-73102:
Structure of AGO2 passenger-ejecting RISC (ej-RISC)
Method: single particle / : Zhang H, Adhav VA, Kehling AC, Nakanishi K

PDB-9ymc:
Structure of AGO2 passenger-ejecting RISC (ej-RISC)
Method: single particle / : Zhang H, Adhav VA, Kehling AC, Nakanishi K

EMDB-75039:
Human AGO2 bound to a miR-20a guide and a position 10-11 mismatched target
Method: single particle / : Savidge A, Nakanishi K

EMDB-73100:
Structure of AGO2 vise-RISC
Method: single particle / : Zhang H, Adhav VA, Kehling AC, Nakanishi K

PDB-9yma:
Structure of AGO2 vise-RISC
Method: single particle / : Zhang H, Adhav VA, Kehling AC, Nakanishi K

EMDB-73103:
Structure of AGO2 mature RISC (mat-RISC)
Method: single particle / : Zhang H, Adhav VA, Kehling AC, Nakanishi K

PDB-9ymd:
Structure of AGO2 mature RISC (mat-RISC)
Method: single particle / : Zhang H, Adhav VA, Kehling AC, Nakanishi K

EMDB-73099:
Structure of AGO2 primary RISC (pri-RISC)
Method: single particle / : Zhang H, Adhav VA, Kehling AC, Nakanishi K

PDB-9ym9:
Structure of AGO2 primary RISC (pri-RISC)
Method: single particle / : Zhang H, Adhav VA, Kehling AC, Nakanishi K

EMDB-75840:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

PDB-11mr:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

EMDB-54176:
CryoEM structure of the spike S protein trimer of the omicron BA.1 variant prepared in the presence of compound II-Na salt
Method: single particle / : Llacer JL, Lopez ML

EMDB-75038:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

PDB-10ay:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

EMDB-53372:
Cryo-EM structure of Oceanobacillus iheyensis group II intron domains D1-D5
Method: single particle / : Jadhav SS, Maiorca M, Mulvaney T, Topf M, Marcia M

EMDB-53373:
Cryo-EM structure of Oceanobacillus iheyensis group II intron domains D1-D5
Method: single particle / : Jadhav SS, Maiorca M, Mulvaney T, Topf M, Marcia M

PDB-9qu6:
Cryo-EM structure of Oceanobacillus iheyensis group II intron domains D1-D5
Method: single particle / : Jadhav SS, Maiorca M, Mulvaney T, Topf M, Marcia M

PDB-9qu7:
Cryo-EM structure of Oceanobacillus iheyensis group II intron domains D1-D5
Method: single particle / : Jadhav SS, Maiorca M, Mulvaney T, Topf M, Marcia M

EMDB-53353:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

PDB-9qtj:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

EMDB-51080:
Group II intron assembly intermediate Domain 1, 2, 3 and 4 "Fully open" state
Method: single particle / : Jadhav SS, Marcia M

PDB-9g56:
Group II intron assembly intermediate Domain 1, 2, 3 and 4 "Fully open" state
Method: single particle / : Jadhav SS, Marcia M

EMDB-70663:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70666:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9oog:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9oom:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70664:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9ook:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-51040:
Group II intron assembly intermediate Domain 1 and 2 "Partly open" state
Method: single particle / : Jadhav SS, Marcia M

EMDB-51041:
Group II intron assembly intermediate Domain 1 to 3 "Fully open" state
Method: single particle / : Jadhav SS, Marcia M

EMDB-51044:
Group II intron assembly intermediate Domain 1 to 3 "Partly open" state
Method: single particle / : Jadhav SS, Marcia M

EMDB-51068:
Group II intron assembly intermediate Domain 1 and 2 "Fully open" state
Method: single particle / : Jadhav SS, Marcia M

EMDB-51077:
Group II intron assembly intermediate Domain 1, 2, 3 and 4 "Partly open" state
Method: single particle / : Jadhav SS, Marcia M

PDB-9g4i:
Group II intron assembly intermediate Domain 1 and 2 "Partly open" state
Method: single particle / : Jadhav SS, Marcia M

PDB-9g4j:
Group II intron assembly intermediate Domain 1 to 3 "Fully open" state
Method: single particle / : Jadhav SS, Marcia M

PDB-9g4l:
Group II intron assembly intermediate Domain 1 to 3 "Partly open" state
Method: single particle / : Jadhav SS, Marcia M

PDB-9g4v:
Group II intron assembly intermediate Domain 1 and 2 "Fully open" state
Method: single particle / : Jadhav SS, Marcia M

PDB-9g54:
Group II intron assembly intermediate Domain 1, 2, 3 and 4 "Partly open" state
Method: single particle / : Jadhav SS, Marcia M

EMDB-72192:
Structure of neurodevelopmental mutant AGO1 F180del in complex with guide RNA
Method: single particle / : Savidge A, Adhav V, Shen Z, Fu T, Nakanishi K

PDB-9q3f:
Structure of neurodevelopmental mutant AGO1 F180del in complex with guide RNA
Method: single particle / : Savidge A, Adhav V, Shen Z, Fu T, Nakanishi K

EMDB-72193:
Cryo-EM structure of human AGO1 in complex with guide RNA
Method: single particle / : Savidge A, Adhav V, Shen Z, Fu T, Nakanishi K

PDB-9q3g:
Cryo-EM structure of human AGO1 in complex with guide RNA
Method: single particle / : Savidge A, Adhav V, Shen Z, Fu T, Nakanishi K

EMDB-44070:
EV-D68 in complex with inhibitor Jun11-53-7
Method: single particle / : Klose T, Kuhn RJ, Jun W

EMDB-44071:
EV-D68 in complex with inhibitor Jun11-54-1
Method: single particle / : Klose T, Kuhn RJ, Jun W

EMDB-44072:
EV-D68 in complex with inhibitor Jun11-69-5
Method: single particle / : Klose T, Kuhn RJ, Jun W

EMDB-44073:
EV-D68 in complex with inhibitor Jun11-78-7
Method: single particle / : Klose T, Kuhn RJ, Jun W

EMDB-42601:
CryoEM structure of Kappa Opioid Receptor bound to a semi-peptide and Gi1
Method: single particle / : Fay JF, Che T

EMDB-29026:
CryoEM structure of Kappa Opioid Receptor bound to a semi-peptide and Gi1
Method: single particle / : Fay JF, Che T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more