Author results

1EF2
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CRYSTAL STRUCTURE OF MANGANESE-SUBSTITUTED KLEBSIELLA AEROGENES UREASE
Descriptor:UREASE ALPHA SUBUNIT, UREASE BETA SUBUNIT, UREASE GAMMA SUBUNIT, ...
Authors:Yamaguchi, K., Cosper, N.J., Stalhandske, C., Scott, R.A., Pearson, M.A., Karplus, P.A., Hausinger, R.P.
Deposit date:2000-02-05
Release date:2000-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Characterization of metal-substituted Klebsiella aerogenes urease.
J.Biol.Inorg.Chem., 4, 1999
3ATY
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CRYSTAL STRUCTURE OF TCOYE
Descriptor:Prostaglandin F2a synthase, FLAVIN MONONUCLEOTIDE
Authors:Yamaguchi, K., Okamoto, N., Tokuoka, K., Sugiyama, S., Uchiyama, N., Matsumura, H., Inaka, K., Urade, Y., Inoue, T.
Deposit date:2011-01-26
Release date:2011-05-04
Last modified:2012-02-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insight into the stereoselective production of PGF2(alpha) by Old Yellow Enzyme from Trypanosoma cruzi
J.Biochem., 150, 2011
1UAT
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THE SIGNIFICANCE OF THE FLEXIBLE LOOP IN THE AZURIN (AZ-ISO2) FROM THE OBLIGATE METHYLOTROPH METHYLOMONAS SP. STRAIN J
Descriptor:Azurin iso-2, COPPER (II) ION, SULFATE ION
Authors:Inoue, T., Suzuki, S., Nisho, N., Yamaguchi, K., Kataoka, K., Tobari, J., Yong, X., Hamanaka, S., Matsumura, H., Kai, Y.
Deposit date:2003-03-19
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J
J.Mol.Biol., 333, 2003
1RKR
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CRYSTAL STRUCTURE OF AZURIN-I FROM ALCALIGENES XYLOSOXIDANS NCIMB 11015
Descriptor:AZURIN-I, COPPER (II) ION
Authors:Li, C., Inoue, T., Gotowda, M., Suzuki, S., Yamaguchi, K., Kataoka, K., Kai, Y.
Deposit date:1997-05-17
Release date:1998-05-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure of azurin I from the denitrifying bacterium Alcaligenes xylosoxidans NCIMB 11015 at 2.45 A resolution.
Acta Crystallogr.,Sect.D, 54, 1998
5X8Q
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CRYSTAL STRUCTURE OF THE MUTANT HUMAN ROR GAMMA LIGAND BINDING DOMAIN WITH ROCKOGENIN.
Descriptor:Nuclear receptor ROR-gamma, Nuclear receptor corepressor 2, (1R,2S,4S,5'R,6R,7S,8R,9S,10R,12S,13S,16S,18S)-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosane-6,2'-oxane]-10,16-diol
Authors:Noguchi, M., Nomura, A., Murase, K., Doi, S., Yamaguchi, K., Adachi, T.
Deposit date:2017-03-03
Release date:2017-06-07
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ternary complex of human ROR gamma ligand-binding domain, inverse agonist and SMRT peptide shows a unique mechanism of corepressor recruitment
Genes Cells, 22, 2017
5X8S
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CRYSTAL STRUCTURE OF THE MUTANT HUMAN ROR GAMMA LIGAND BINDING DOMAIN WITH URSOLIC ACID.
Descriptor:Uncharacterized protein, Ursolic acid
Authors:Noguchi, M., Nomura, A., Murase, K., Doi, S., Yamaguchi, K., Adachi, T.
Deposit date:2017-03-03
Release date:2017-06-07
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ternary complex of human ROR gamma ligand-binding domain, inverse agonist and SMRT peptide shows a unique mechanism of corepressor recruitment
Genes Cells, 22, 2017
5X8U
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CRYSTAL STRUCTURE OF THE WILD HUMAN ROR GAMMA LIGAND BINDING DOMAIN.
Descriptor:Uncharacterized protein, Nuclear receptor coactivator 1
Authors:Noguchi, M., Nomura, A., Murase, K., Doi, S., Yamaguchi, K., Adachi, T.
Deposit date:2017-03-03
Release date:2017-06-07
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ternary complex of human ROR gamma ligand-binding domain, inverse agonist and SMRT peptide shows a unique mechanism of corepressor recruitment
Genes Cells, 22, 2017
5X8W
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CRYSTAL STRUCTURE OF THE MUTANT HUMAN ROR GAMMA LIGAND BINDING DOMAIN.
Descriptor:Uncharacterized protein, Nuclear receptor coactivator 1
Authors:Noguchi, M., Nomura, A., Murase, K., Doi, S., Yamaguchi, K., Adachi, T.
Deposit date:2017-03-03
Release date:2017-06-07
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ternary complex of human ROR gamma ligand-binding domain, inverse agonist and SMRT peptide shows a unique mechanism of corepressor recruitment
Genes Cells, 22, 2017
5X8X
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CRYSTAL STRUCTURE OF THE MUTANT HUMAN ROR GAMMA LIGAND BINDING DOMAIN WITH COMPOUND A.
Descriptor:Uncharacterized protein, Nuclear receptor corepressor 2, (3R,4R)-4-[4-cyclopropyl-5-[3-(2-methylpropyl)cyclobutyl]-1,2,4-triazol-3-yl]-N-(2,4-dimethylphenyl)-1-ethanoyl-pyrrolidine-3-carboxamide
Authors:Noguchi, M., Nomura, A., Murase, K., Doi, S., Yamaguchi, K., Adachi, T.
Deposit date:2017-03-03
Release date:2017-06-07
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Ternary complex of human ROR gamma ligand-binding domain, inverse agonist and SMRT peptide shows a unique mechanism of corepressor recruitment
Genes Cells, 22, 2017
6A22
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TERNARY COMPLEX OF HUMAN ROR GAMMA LIGAND BINDING DOMAIN WITH COMPOUND T.
Descriptor:Nuclear receptor ROR-gamma, Nuclear receptor corepressor 2, 2-[2-[1-~{tert}-butyl-5-(4-methoxyphenyl)pyrazol-4-yl]-1,3-thiazol-4-yl]-~{N}-(oxan-4-ylmethyl)ethanamide
Authors:Noguchi, M., Nomura, A., Doi, S., Yamaguchi, K., Adachi, T.
Deposit date:2018-06-08
Release date:2018-12-12
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Ternary crystal structure of human ROR gamma ligand-binding-domain, an inhibitor and corepressor peptide provides a new insight into corepressor interaction
Sci Rep, 8, 2018
3ATZ
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CRYSTAL STRUCTURE OF TCOYE WITH PHBA
Descriptor:Prostaglandin F2a synthase, FLAVIN MONONUCLEOTIDE, P-HYDROXYBENZALDEHYDE
Authors:Okamoto, N., Yamaguchi, K., Mizohata, E., Tokuoka, K., Uchiyama, N., Sugiyama, S., Matsumura, H., Inaka, K., Urade, Y., Inoue, T.
Deposit date:2011-01-26
Release date:2012-02-01
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural insight into the stereoselective production of PGF2(alpha) by Old Yellow Enzyme from Trypanosoma cruzi
J.Biochem., 150, 2011
2D05
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CHITOSANASE FROM BACILLUS CIRCULANS MUTANT K218P
Descriptor:Chitosanase, SULFATE ION
Authors:Fukamizo, T., Amano, S., Yamaguchi, K., Yoshikawa, T., Katsumi, T., Saito, J., Suzuki, M., Miki, K., Nagata, Y., Ando, A.
Deposit date:2005-07-25
Release date:2005-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Bacillus circulans MH-K1 Chitosanase: Amino Acid Residues Responsible for Substrate Binding
J.Biochem.(Tokyo), 138, 2005
1BQ5
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NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS GIFU 1051
Descriptor:NITRITE REDUCTASE, COPPER (II) ION
Authors:Inoue, T., Gotowda, M., Deligeer, Suzuki, S., Kataoka, K., Yamaguchi, K., Watanabe, H., Goho, M., Yasushi, K.A.I.
Deposit date:1998-08-21
Release date:1999-08-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Type 1 Cu structure of blue nitrite reductase from Alcaligenes xylosoxidans GIFU 1051 at 2.05 A resolution: comparison of blue and green nitrite reductases.
J.Biochem.(Tokyo), 124, 1998
1BZA
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BETA-LACTAMASE TOHO-1 FROM ESCHERICHIA COLI TUH12191
Descriptor:BETA-LACTAMASE, SULFATE ION
Authors:Ibuka, A., Taguchi, A., Ishiguro, M., Fushinobu, S., Ishii, Y., Kamitori, S., Okuyama, K., Yamaguchi, K., Konno, M., Matsuzawa, H.
Deposit date:1998-10-28
Release date:1999-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the E166A mutant of extended-spectrum beta-lactamase Toho-1 at 1.8 A resolution.
J.Mol.Biol., 285, 1999
1WS7
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CRYSTAL STRUCTURE OF MAVICYANIN FROM CUCURBITA PEPO MEDULLOSA (ZUCCHINI)
Descriptor:Mavicyanin, COPPER (I) ION
Authors:Xie, Y., Inoue, T., Miyamoto, Y., Matsumura, H., Kataoka, K., Yamaguchi, K., Nojini, M., Suzuki, S., Kai, Y.
Deposit date:2004-11-02
Release date:2004-11-23
Last modified:2018-07-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
1WS8
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CRYSTAL STRUCTURE OF MAVICYANIN FROM CUCURBITA PEPO MEDULLOSA (ZUCCHINI)
Descriptor:mavicyanin, COPPER (II) ION, GLYCEROL
Authors:Xie, Y., Inoue, T., Miyamoto, Y., Matsumura, H., Kunishige, K., Yamaguchi, K., Nojini, M., Suzuki, S., Kai, Y.
Deposit date:2004-11-02
Release date:2004-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
2D0V
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CRYSTAL STRUCTURE OF METHANOL DEHYDROGENASE FROM HYPHOMICROBIUM DENITRIFICANS
Descriptor:methanol dehydrogenase large subunit, methanol dehydrogenase small subunit, CALCIUM ION, ...
Authors:Nojiri, M., Hira, D., Yamaguchi, K., Suzuki, S.
Deposit date:2005-08-09
Release date:2006-08-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Crystal structures of cytochrome c(L) and methanol dehydrogenase from Hyphomicrobium denitrificans: structural and mechanistic insights into interactions between the two proteins
Biochemistry, 45, 2006
2D0W
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CRYSTAL STRUCTURE OF CYTOCHROME CL FROM HYPHOMICROBIUM DENITRIFICANS
Descriptor:cytochrome cL, ZINC ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nojiri, M., Hira, D., Yamaguchi, K., Suzuki, S.
Deposit date:2005-08-10
Release date:2006-08-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structures of cytochrome c(L) and methanol dehydrogenase from Hyphomicrobium denitrificans: structural and mechanistic insights into interactions between the two proteins
Biochemistry, 45, 2006
2ZON
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CRYSTAL STRUCTURE OF ELECTRON TRANSFER COMPLEX OF NITRITE REDUCTASE WITH CYTOCHROME C
Descriptor:Dissimilatory copper-containing nitrite reductase, cytochrome c551, COPPER (II) ION, ...
Authors:Nojiri, M., Koteishi, H., Yamaguchi, K., Suzuki, S.
Deposit date:2008-05-27
Release date:2009-06-09
Last modified:2013-09-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of inter-protein electron transfer for nitrite reduction in denitrification
Nature, 462, 2009
2ZOO
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CRYSTAL STRUCTURE OF NITRITE REDUCTASE FROM PSEUDOALTEROMONAS HALOPLANKTIS TAC125
Descriptor:Probable nitrite reductase, SUCROSE, COPPER (II) ION, ...
Authors:Nojiri, M., Tsuda, A., Yamaguchi, K., Suzuki, S.
Deposit date:2008-05-27
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Electron transfer processes within and between proteins containing the HEME C and blue Cu
To be Published
1IYS
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CRYSTAL STRUCTURE OF CLASS A BETA-LACTAMASE TOHO-1
Descriptor:BETA-LACTAMASE TOHO-1, SULFATE ION
Authors:Ibuka, A.S., Ishii, Y., Yamaguchi, K., Matsuzawa, H., Sakai, H.
Deposit date:2002-09-06
Release date:2003-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure of Extended-Spectrum beta-Lactamase Toho-1: Insights into the Molecular Mechanism for Catalytic Reaction and Substrate Specificity Expansion
Biochemistry, 42, 2003
1CUO
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CRYSTAL STRUCTURE ANALYSIS OF ISOMER-2 AZURIN FROM METHYLOMONAS J
Descriptor:PROTEIN (AZURIN ISO-2), COPPER (II) ION
Authors:Inoue, T., Nishio, N., Kai, Y., Suzuki, S., Kataoka, K.
Deposit date:1999-08-21
Release date:2000-08-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J.
J.Mol.Biol., 333, 2003
2DDX
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CRYSTAL STRUCTURE OF BETA-1,3-XYLANASE FROM VIBRIO SP. AX-4
Descriptor:beta-1,3-xylanase, MAGNESIUM ION, GLYCEROL
Authors:Sakaguchi, K.
Deposit date:2006-02-06
Release date:2007-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:Atomic resolution analysis of beta-1,3-xylanase catalytic module from Vibrio sp. AX-4
To be Published
2EI8
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FACTOR XA IN COMPLEX WITH THE INHIBITOR (1S,2R,4S)-N1-[(5-CHLOROINDOL-2-YL)CARBONYL]-4-(N,N-DIMETHYLCARBAMOYL)-N2-[(5-METHYL-4,5,6,7-TETRAHYDROTHIAZOLO[5,4-C]PYRIDIN-2-YL)CARBONYL]-1,2-CYCLOHEXANEDIAMINE
Descriptor:Coagulation factor X, heavy chain, light chain, ...
Authors:Suzuki, M.
Deposit date:2007-03-12
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery of N-{(1R,2S,5S)-2-{[(5-Chloroindol-2-yl)carbonyl]amino}-5-[(dimethylamino)carbonyl]cyclohexyl}-5-methyl-4,5,6,7-tetrahydrothiazolo[5,4-c]pyridine-2-carboxamide hydrochloride: A Novel, Potent and Orally Active Direct Inhibitor of Factor Xa
To be Published
2DV6
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CRYSTAL STRUCTURE OF NITRITE REDUCTASE FROM HYPHOMICROBIUM DENITRIFICANS
Descriptor:Nitrite reductase, COPPER (II) ION, POTASSIUM ION
Authors:Nojiri, M., Xie, Y., Yamamoto, T., Inoue, T., Suzuki, S., Kai, Y.
Deposit date:2006-07-28
Release date:2007-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and function of a hexameric copper-containing nitrite reductase.
Proc.Natl.Acad.Sci.USA, 104, 2007
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