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8ZPQ
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BU of 8zpq by Molmil
Crystal structure of SARS-Cov-2-BQ1.1-RBD and 70fab
Descriptor: 70fab-H, 70fab-L, Spike protein S1
Authors:Wu, Y, Gao, F.
Deposit date:2024-05-31
Release date:2025-06-11
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of SARS-Cov-2-BQ1.1-RBD and 70fab
To Be Published
5D82
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BU of 5d82 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y16(Cl-Y)
Descriptor: Delta(5)-3-ketosteroid isomerase
Authors:Wu, Y, Fried, S.D, Boxer, S.G.
Deposit date:2015-08-15
Release date:2015-12-02
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Dissecting Proton Delocalization in an Enzyme's Hydrogen Bond Network with Unnatural Amino Acids.
Biochemistry, 54, 2015
5D81
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BU of 5d81 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI); D40N, Y57(Cl-Y)
Descriptor: Delta(5)-3-ketosteroid isomerase, SULFATE ION
Authors:Wu, Y, Fried, S.D, Boxer, S.G.
Deposit date:2015-08-15
Release date:2015-12-02
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Dissecting Proton Delocalization in an Enzyme's Hydrogen Bond Network with Unnatural Amino Acids.
Biochemistry, 54, 2015
7RNN
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BU of 7rnn by Molmil
Human ASIC1a-Nb.C1 complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acid-sensing ion channel 1, Nanobodies Nb.C1
Authors:Wu, Y, Chen, Z, Sigworth, F.J, Canessa, C.M.
Deposit date:2021-07-29
Release date:2021-08-11
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structure and analysis of nanobody binding to the human ASIC1a ion channel.
Elife, 10, 2021
4WBE
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BU of 4wbe by Molmil
Crystal structure of the HR-1 domain of human caprin-1 in the C121 space group
Descriptor: Caprin-1
Authors:Wu, Y, Zhu, J, Huang, X, Du, Z.
Deposit date:2014-09-03
Release date:2015-10-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of the HR-1 domain of human caprin-1 in the C121 space group
To be published
4WBP
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BU of 4wbp by Molmil
Crystal structure of the HR-1 domain of human caprin-1 in the P3121 space group
Descriptor: Caprin-1
Authors:Wu, Y, Zhu, J, Huang, X, Du, Z.
Deposit date:2014-09-03
Release date:2015-10-21
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the HR-1 domain of human caprin-1 in the P3121 space group
To be published
6F5E
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BU of 6f5e by Molmil
Crystal structure of DARPin-DARPin rigid fusion, variant DD_D12_10_47 in complex JNK1a1 and JIP1 peptide
Descriptor: C-Jun-amino-terminal kinase-interacting protein 1, DD_D12_10_47, Mitogen-activated protein kinase 8
Authors:Wu, Y, Mittl, P.R, Honegger, A, Batyuk, A, Plueckthun, A.
Deposit date:2017-12-01
Release date:2017-12-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of DARPin-DARPin rigid fusion, variant DD_D12_10_47 in complex JNK1a1 and JIP1 peptide
To be published
6G8V
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BU of 6g8v by Molmil
Crystal structure of the light chain of botulinum neurotoxin X (residues 2-442)
Descriptor: GLYCEROL, Light chain of botulinum neurotoxin X (res. 2-442), ZINC ION
Authors:Wu, Y, Kammerer, R.
Deposit date:2018-04-10
Release date:2019-07-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of the light chain of botulinum neurotoxin X (residues 2-442)
To Be Published
6G8U
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BU of 6g8u by Molmil
Crystal structure of the light chain of botulinum neurotoxin X (residues 2-427)
Descriptor: Light chain of botulinum neurotoxin X (res. 2-427), ZINC ION
Authors:Wu, Y, Kammerer, R.
Deposit date:2018-04-10
Release date:2019-07-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.308 Å)
Cite:Crystal structure of the light chain of botulinum neurotoxin X (residues 2-427)
To Be Published
5NXQ
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BU of 5nxq by Molmil
Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to a stapled Sld5 CIP
Descriptor: DNA polymerase alpha-binding protein, GLYCEROL, MET-ASP-ILE-UA1-ILE-ASP-ASP-ILE-LEU-UA2-GLU-LEU-ASP-LYS-GLU
Authors:Wu, Y, Pellegrini, L.
Deposit date:2017-05-10
Release date:2017-08-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.413 Å)
Cite:Targeting the Genome-Stability Hub Ctf4 by Stapled-Peptide Design.
Angew. Chem. Int. Ed. Engl., 56, 2017
3N6N
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BU of 3n6n by Molmil
crystal structure of EV71 RdRp in complex with Br-UTP
Descriptor: 5-bromouridine 5'-(tetrahydrogen triphosphate), NICKEL (II) ION, RNA-dependent RNA polymerase
Authors:Wu, Y, Lou, Z.Y, Miao, Y, Yu, Y, Rao, Z.H.
Deposit date:2010-05-26
Release date:2011-06-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structures of EV71 RNA-dependent RNA polymerase in complex with substrate and analogue provide a drug target against the hand-foot-and-mouth disease pandemic in China.
Protein Cell, 1, 2010
3N6M
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BU of 3n6m by Molmil
Crystal structure of EV71 RdRp in complex with GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, NICKEL (II) ION, RNA-dependent RNA polymerase
Authors:Wu, Y, Lou, Z.Y, Miao, Y, Yu, Y, Rao, Z.H.
Deposit date:2010-05-26
Release date:2011-06-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of EV71 RNA-dependent RNA polymerase in complex with substrate and analogue provide a drug target against the hand-foot-and-mouth disease pandemic in China.
Protein Cell, 1, 2010
3NAF
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BU of 3naf by Molmil
Structure of the Intracellular Gating Ring from the Human High-conductance Ca2+ gated K+ Channel (BK Channel)
Descriptor: Calcium-activated potassium channel subunit alpha-1,Calcium-activated potassium channel subunit alpha-1,Calcium-activated potassium channel subunit alpha-1
Authors:Wu, Y, Yang, Y, Ye, S, Jiang, Y.
Deposit date:2010-06-01
Release date:2010-06-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the gating ring from the human large-conductance Ca(2+)-gated K(+) channel.
Nature, 466, 2010
1T4G
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BU of 1t4g by Molmil
ATPase in complex with AMP-PNP
Descriptor: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Wu, Y, He, Y, Moya, I.A, Qian, X, Luo, Y.
Deposit date:2004-04-29
Release date:2004-08-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Archaeal Recombinase RadA; A Snapshot of Its Extended Conformation.
Mol.Cell, 15, 2004
7F0I
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BU of 7f0i by Molmil
phosphodiesterase-9A in complex with inhibitor 4b
Descriptor: 1-cyclopentyl-6-[[(2R)-1-(6-fluoranyl-2-azaspiro[3.3]heptan-2-yl)-1-oxidanylidene-propan-2-yl]amino]-5H-pyrazolo[3,4-d]pyrimidin-4-one, Isoform PDE9A2 of High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, MAGNESIUM ION, ...
Authors:Wu, Y, Huang, Y.Y, Luo, H.B.
Deposit date:2021-06-04
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.70000887 Å)
Cite:Discovery of Potent Phosphodiesterase-9 Inhibitors for the Treatment of Hepatic Fibrosis
J.Med.Chem., 64, 2021
3N6L
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BU of 3n6l by Molmil
The crystal structure of RNA-dependent RNA polymerase of EV71 virus
Descriptor: NICKEL (II) ION, RNA-dependent RNA polymerase
Authors:Wu, Y, Rao, Z.H.
Deposit date:2010-05-26
Release date:2011-06-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of EV71 RNA-dependent RNA polymerase in complex with substrate and analogue provide a drug target against the hand-foot-and-mouth disease pandemic in China.
Protein Cell, 1, 2010
1XU4
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BU of 1xu4 by Molmil
ATPASE IN COMPLEX WITH AMP-PNP, MAGNESIUM AND POTASSIUM CO-F
Descriptor: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Wu, Y, Qian, X, He, Y, Moya, I.A, Luo, Y.
Deposit date:2004-10-25
Release date:2004-11-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of an ATPase-active form of Rad51 homolog from Methanococcus voltae. Insights into potassium dependence
J.Biol.Chem., 280, 2005
5KP3
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BU of 5kp3 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI) bound to Equilenin; D40N, Y57(Cl-Y)
Descriptor: EQUILENIN, SULFATE ION, Steroid Delta-isomerase
Authors:Wu, Y, Boxer, S.G.
Deposit date:2016-07-01
Release date:2016-09-07
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Critical Test of the Electrostatic Contribution to Catalysis with Noncanonical Amino Acids in Ketosteroid Isomerase.
J.Am.Chem.Soc., 138, 2016
5KP1
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BU of 5kp1 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI) bound to Equilenin; D40N, Y16(Cl-Y)
Descriptor: EQUILENIN, SULFATE ION, Steroid Delta-isomerase
Authors:Wu, Y, Boxer, S.G.
Deposit date:2016-07-01
Release date:2016-09-07
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (1.218 Å)
Cite:A Critical Test of the Electrostatic Contribution to Catalysis with Noncanonical Amino Acids in Ketosteroid Isomerase.
J.Am.Chem.Soc., 138, 2016
5LW1
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BU of 5lw1 by Molmil
Crystal structure of DARPin-DARPin rigid fusion, variant DD_232_11_D12 in complex JNK1a1 and JIP1 peptide
Descriptor: ADENOSINE, C-Jun-amino-terminal kinase-interacting protein 1, DD_232_11_D12, ...
Authors:Wu, Y, Batyuk, A, Mittl, P.R, Honegger, A, Plueckthun, A.
Deposit date:2016-09-15
Release date:2017-12-13
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Basis for the Selective Inhibition of c-Jun N-Terminal Kinase 1 Determined by Rigid DARPin-DARPin Fusions.
J.Mol.Biol., 430, 2018
5KP4
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BU of 5kp4 by Molmil
Crystal Structure of Ketosteroid Isomerase from Pseudomonas putida (pKSI) bound to 19-nortestosterone
Descriptor: (8~{R},9~{S},10~{R},13~{S},14~{S},17~{S})-13-methyl-17-oxidanyl-2,6,7,8,9,10,11,12,14,15,16,17-dodecahydro-1~{H}-cyclop enta[a]phenanthren-3-one, Steroid Delta-isomerase
Authors:Wu, Y, Boxer, S.G.
Deposit date:2016-07-01
Release date:2016-09-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.706 Å)
Cite:A Critical Test of the Electrostatic Contribution to Catalysis with Noncanonical Amino Acids in Ketosteroid Isomerase.
J.Am.Chem.Soc., 138, 2016
8VC6
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BU of 8vc6 by Molmil
Voltage gated potassium ion channel Kv1.2 in Potassium
Descriptor: Potassium voltage-gated channel subfamily A member 2
Authors:Wu, Y, Sigworth, F.J.
Deposit date:2023-12-13
Release date:2024-07-10
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Cryo-EM structures of Kv1.2 potassium channels, conducting and non-conducting.
Biorxiv, 2024
8VC3
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BU of 8vc3 by Molmil
Voltage gated potassium ion channel Kv1.2 in complex with DTx
Descriptor: Kunitz-type serine protease inhibitor homolog alpha-dendrotoxin, POTASSIUM ION, Potassium voltage-gated channel subfamily A member 2
Authors:Wu, Y, Sigworth, F.J.
Deposit date:2023-12-13
Release date:2024-07-10
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structures of Kv1.2 potassium channels, conducting and non-conducting.
Biorxiv, 2024
8VC4
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BU of 8vc4 by Molmil
Voltage gated potassium ion channel Kv1.2 in Sodium
Descriptor: Potassium voltage-gated channel subfamily A member 2
Authors:Wu, Y, Sigworth, F.J.
Deposit date:2023-12-13
Release date:2024-07-10
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Cryo-EM structures of Kv1.2 potassium channels, conducting and non-conducting.
Biorxiv, 2024
8VCH
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BU of 8vch by Molmil
Voltage gated potassium ion channel Kv1.2 W366F, C-type inactivated
Descriptor: POTASSIUM ION, Potassium voltage-gated channel subfamily A member 2
Authors:Wu, Y, Sigworth, F.J.
Deposit date:2023-12-14
Release date:2024-07-10
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.55 Å)
Cite:Cryo-EM structures of Kv1.2 potassium channels, conducting and non-conducting.
Biorxiv, 2024

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PDB entries from 2025-07-09

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