Author results

1A47
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CGTASE FROM THERMOANAEROBACTERIUM THERMOSULFURIGENES EM1 IN COMPLEX WITH A MALTOHEXAOSE INHIBITOR
Descriptor:CYCLODEXTRIN GLYCOSYLTRANSFERASE, ALPHA-D-GLUCOSE, 6-DEOXY-ALPHA-D-GLUCOSE, ...
Authors:Uitdehaag, J.C.M., Kalk, K.H., Rozeboom, H.J., Dijkstra, B.W.
Deposit date:1998-02-11
Release date:1998-06-17
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Engineering of cyclodextrin product specificity and pH optima of the thermostable cyclodextrin glycosyltransferase from Thermoanaerobacterium thermosulfurigenes EM1.
J.Biol.Chem., 273, 1998
2CXG
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CYCLODEXTRIN GLYCOSYLTRANSFERASE COMPLEXED TO THE INHIBITOR ACARBOSE
Descriptor:CYCLODEXTRIN GLYCOSYLTRANSFERASE, ALPHA-D-GLUCOSE, 6-DEOXY-ALPHA-D-GLUCOSE, ...
Authors:Strokopytov, B.V., Uitdehaag, J.C.M., Ruiterkamp, R., Dijkstra, B.W.
Deposit date:1998-05-08
Release date:1998-10-14
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray structure of cyclodextrin glycosyltransferase complexed with acarbose. Implications for the catalytic mechanism of glycosidases.
Biochemistry, 34, 1995
2DIJ
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COMPLEX OF A Y195F MUTANT CGTASE FROM B. CIRCULANS STRAIN 251 COMPLEXED WITH A MALTONONAOSE INHIBITOR AT PH 9.8 OBTAINED AFTER SOAKING THE CRYSTAL WITH ACARBOSE AND MALTOHEXAOSE
Descriptor:CYCLODEXTRIN GLYCOSYLTRANSFERASE, ALPHA-D-GLUCOSE, 6-DEOXY-ALPHA-D-GLUCOSE, ...
Authors:Strokopytov, B.V., Knegtel, R.M.A., Uitdehaag, J.C.M., Dijkstra, B.W.
Deposit date:1998-05-27
Release date:1998-12-09
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of cyclodextrin glycosyltransferase complexed with a maltononaose inhibitor at 2.6 angstrom resolution. Implications for product specificity.
Biochemistry, 35, 1996
1CXK
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COMPLEX BETWEEN A MALTONONAOSE SUBSTRATE AND BACILLUS CIRCULANS STRAIN 251 CGTASE E257Q/D229N
Descriptor:PROTEIN (CYCLODEXTRIN-GLYCOSYLTRANSFERASE), ALPHA-D-GLUCOSE, CALCIUM ION
Authors:Uitdehaag, J.C.M., Kalk, K.H., Dijkstra, B.W.
Deposit date:1999-02-24
Release date:1999-05-03
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:X-ray structures along the reaction pathway of cyclodextrin glycosyltransferase elucidate catalysis in the alpha-amylase family.
Nat.Struct.Biol., 6, 1999
1CXL
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COMPLEX BETWEEN A COVALENT INTERMEDIATE AND BACILLUS CIRCULANS STRAIN 251 CGTASE E257Q
Descriptor:PROTEIN (CYCLODEXTRIN-GLYCOSYLTRANSFERASE), ALPHA-D-GLUCOSE, 4-DEOXY-ALPHA-D-GLUCOSE, ...
Authors:Uitdehaag, J.C.M., Dijkstra, B.W.
Deposit date:1999-02-27
Release date:1999-05-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:X-ray structures along the reaction pathway of cyclodextrin glycosyltransferase elucidate catalysis in the alpha-amylase family.
Nat.Struct.Biol., 6, 1999
1D3C
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MICHAELIS COMPLEX OF BACILLUS CIRCULANS STRAIN 251 CYCLODEXTRIN GLYCOSYLTRANSFERASE WITH GAMMA-CYCLODEXTRIN
Descriptor:CYCLODEXTRIN GLYCOSYLTRANSFERASE, ALPHA-D-GLUCOSE, CALCIUM ION, ...
Authors:Uitdehaag, J.C.M., Kalk, K.H., van der Veen, B.A., Dijkhuizen, L., Dijkstra, B.W.
Deposit date:1999-09-29
Release date:1999-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:The cyclization mechanism of cyclodextrin glycosyltransferase (CGTase) as revealed by a gamma-cyclodextrin-CGTase complex at 1.8-A resolution.
J.Biol.Chem., 274, 1999
1DTU
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BACILLUS CIRCULANS STRAIN 251 CYCLODEXTRIN GLYCOSYLTRANSFERASE: A MUTANT Y89D/S146P COMPLEXED TO AN HEXASACCHARIDE INHIBITOR
Descriptor:PROTEIN (CYCLODEXTRIN GLYCOSYLTRANSFERASE), ALPHA-D-GLUCOSE, 6-DEOXY-ALPHA-D-GLUCOSE, ...
Authors:Uitdehaag, J.C.M., Kalk, K.H., Dijkstra, B.W.
Deposit date:2000-01-13
Release date:2000-03-06
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Rational design of cyclodextrin glycosyltransferase from Bacillus circulans strain 251 to increase alpha-cyclodextrin production.
J.Mol.Biol., 296, 2000
1EO5
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BACILLUS CIRCULANS STRAIN 251 CYCLODEXTRIN GLYCOSYLTRANSFERASE IN COMPLEX WITH MALTOHEPTAOSE
Descriptor:PROTEIN (CYCLODEXTRIN GLYCOSYLTRANSFERASE), BETA-D-GLUCOSE, ALPHA-D-GLUCOSE, ...
Authors:Uitdehaag, J.C.M., Dijkstra, B.W.
Deposit date:2000-03-22
Release date:2000-11-22
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of maltohexaose and maltoheptaose bound at the donor sites of cyclodextrin glycosyltransferase give insight into the mechanisms of transglycosylation activity and cyclodextrin size specificity.
Biochemistry, 39, 2000
1EO7
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BACILLUS CIRCULANS STRAIN 251 CYCLODEXTRIN GLYCOSYLTRANSFERASE IN COMPLEX WITH MALTOHEXAOSE
Descriptor:PROTEIN (CYCLODEXTRIN GLYCOSYLTRANSFERASE), ALPHA-D-GLUCOSE, CALCIUM ION
Authors:Uitdehaag, J.C.M., Dijkstra, B.W.
Deposit date:2000-03-22
Release date:2000-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Structures of maltohexaose and maltoheptaose bound at the donor sites of cyclodextrin glycosyltransferase give insight into the mechanisms of transglycosylation activity and cyclodextrin size specificity.
Biochemistry, 39, 2000
1FP8
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STRUCTURE OF THE AMYLOMALTASE FROM THERMUS THERMOPHILUS HB8 IN SPACE GROUP P21212
Descriptor:4-ALPHA-GLUCANOTRANSFERASE, MERCURY (II) ION, CHLORIDE ION
Authors:Uitdehaag, J.C.M., Euverink, G.J., van der Veen, B.A., van der Maarel, M., Dijkstra, B.W.
Deposit date:2000-08-31
Release date:2003-09-02
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and mechanism of the amylomaltase from Thermus thermophilus HB8
To be Published
1FP9
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STRUCTURE OF AMYLOMALTASE FROM THERMUS THERMOPHILUS HB8 IN SPACE GROUP C2
Descriptor:4-ALPHA-GLUCANOTRANSFERASE
Authors:Uitdehaag, J.C.M., Euverink, G.J., van der Veen, B.A., van der Maarel, M., Dijkstra, B.W.
Deposit date:2000-08-31
Release date:2003-09-02
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the amylomaltase from Thermus thermophilus HB8 in space group C2
To be Published
1KCK
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BACILLUS CIRCULANS STRAIN 251 CYCLODEXTRIN GLYCOSYL TRANSFERASE MUTANT N193G
Descriptor:CYCLODEXTRIN GLYCOSYLTRANSFERASE, ALPHA-D-GLUCOSE, 6-DEOXY-ALPHA-D-GLUCOSE, ...
Authors:Rozeboom, H.J., Uitdehaag, J.C.M., Dijkstra, B.W.
Deposit date:2001-11-09
Release date:2002-01-16
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:The remote substrate binding subsite -6 in cyclodextrin-glycosyltransferase controls the transferase activity of the enzyme via an induced-fit mechanism.
J.Biol.Chem., 277, 2002
1KCL
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BACILLUS CIRUCLANS STRAIN 251 CYCLODEXTRIN GLYCOSYL TRANSFERASE MUTANT G179L
Descriptor:Cyclodextrin glycosyltransferase, MALTOSE, ALPHA-D-GLUCOSE, ...
Authors:Rozeboom, H.J., Uitdehaag, J.C.M., Dijkstra, B.W.
Deposit date:2001-11-09
Release date:2002-01-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The remote substrate binding subsite -6 in cyclodextrin-glycosyltransferase controls the transferase activity of the enzyme via an induced-fit mechanism.
J.Biol.Chem., 277, 2002
1NT0
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CRYSTAL STRUCTURE OF THE CUB1-EGF-CUB2 REGION OF MASP2
Descriptor:mannose-binding protein associated serine protease-2, N-ACETYL-D-GLUCOSAMINE, CALCIUM ION, ...
Authors:Feinberg, H., Uitdehaag, J.C.M., Davies, J.M., Wallis, R., Drickamer, K., Weis, W.I.
Deposit date:2003-01-28
Release date:2003-05-20
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the CUB1-EGF-CUB2 region of mannose-binding protein associated serine protease-2
Embo J., 22, 2003
3BMV
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CYCLODEXTRIN GLYCOSYL TRANSFERASE FROM THERMOANEROBACTERIUM THERMOSULFURIGENES EM1 MUTANT S77P
Descriptor:Cyclomaltodextrin glucanotransferase, CALCIUM ION, SULFATE ION, ...
Authors:Rozeboom, H.J., van Oosterwijk, N., Dijkstra, B.W.
Deposit date:2007-12-13
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Elimination of competing hydrolysis and coupling side reactions of a cyclodextrin glucanotransferase by directed evolution.
Biochem.J., 413, 2008
3BMW
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CYCLODEXTRIN GLYCOSYL TRANSFERASE FROM THERMOANEROBACTERIUM THERMOSULFURIGENES EM1 MUTANT S77P COMPLEXED WITH A MALTOHEPTAOSE INHIBITOR
Descriptor:Cyclomaltodextrin glucanotransferase, ALPHA-D-GLUCOSE, 6-DEOXY-ALPHA-D-GLUCOSE, ...
Authors:Rozeboom, H.J., van Oosterwijk, N., Dijkstra, B.W.
Deposit date:2007-12-13
Release date:2008-05-27
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Elimination of competing hydrolysis and coupling side reactions of a cyclodextrin glucanotransferase by directed evolution.
Biochem.J., 413, 2008
2W8Y
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RU486 BOUND TO THE PROGESTERONE RECEPTOR IN A DESTABILIZED AGONISTIC CONFORMATION
Descriptor:PROGESTERONE RECEPTOR, 11-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE, SULFATE ION, ...
Authors:Raaijmakers, H.C.A., Versteeg, J., Uitdehaag, J.C.M.
Deposit date:2009-01-20
Release date:2009-04-28
Last modified:2017-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The X-Ray Structure of Ru486 Bound to the Progesterone Receptor in a Destabilized Agonistic Conformation.
J.Biol.Chem., 284, 2009
3IPQ
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X-RAY STRUCTURE OF GW3965 SYNTHETIC AGONIST BOUND TO THE LXR-ALPHA
Descriptor:Oxysterols receptor LXR-alpha, Nuclear receptor coactivator 1, [3-(3-{[2-chloro-3-(trifluoromethyl)benzyl](2,2-diphenylethyl)amino}propoxy)phenyl]acetic acid, ...
Authors:Fradera, X., Vu, D., Nimz, O., Skene, R., Hosfield, D., Wijnands, R., Cooke, A.J., Haunso, A., King, A., Bennet, D.J., McGuire, R., Uitdehaag, J.C.M.
Deposit date:2009-08-18
Release date:2010-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structures of the LXRalpha LBD in its homodimeric form and implications for heterodimer signaling.
J.Mol.Biol., 399, 2010
3IPS
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X-RAY STRUCTURE OF BENZISOXAZOLE SYNTHETIC AGONIST BOUND TO THE LXR-ALPHA
Descriptor:Oxysterols receptor LXR-alpha, Nuclear receptor coactivator 1, SULFATE ION, ...
Authors:Fradera, X., Vu, D., Nimz, O., Skene, R., Hosfield, D., Wijnands, R., Cooke, A.J., Haunso, A., King, A., Bennet, D.J., McGuire, R., Uitdehaag, J.C.M.
Deposit date:2009-08-18
Release date:2010-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:X-ray structures of the LXRalpha LBD in its homodimeric form and implications for heterodimer signaling.
J.Mol.Biol., 399, 2010
3IPU
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X-RAY STRUCTURE OF BENZISOXAZOLE UREA SYNTHETIC AGONIST BOUND TO THE LXR-ALPHA
Descriptor:Oxysterols receptor LXR-alpha, Nuclear receptor coactivator 1, 4-{[methyl(3-{[7-propyl-3-(trifluoromethyl)-1,2-benzisoxazol-6-yl]oxy}propyl)carbamoyl]amino}benzoic acid, ...
Authors:Fradera, X., Vu, D., Nimz, O., Skene, R., Hosfield, D., Wijnands, R., Cooke, A.J., Haunso, A., King, A., Bennet, D.J., McGuire, R., Uitdehaag, J.C.M.
Deposit date:2009-08-18
Release date:2010-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:X-ray structures of the LXRalpha LBD in its homodimeric form and implications for heterodimer signaling.
J.Mol.Biol., 399, 2010
3KW9
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X-RAY STRUCTURE OF CATHEPSIN K COVALENTLY BOUND TO A TRIAZINE LIGAND
Descriptor:Cathepsin K, 4-(cyclohexylamino)-6-piperazin-1-yl-1,3,5-triazine-2-carbonitrile, trifluoroacetic acid
Authors:Uitdehaag, J.C.M., van Zeeland, M.
Deposit date:2009-12-01
Release date:2010-03-02
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Design and optimization of a series of novel 2-cyano-pyrimidines as cathepsin K inhibitors.
Bioorg.Med.Chem.Lett., 20, 2010
3KWB
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STRUCTURE OF CATK COVALENTLY BOUND TO A DIOXO-TRIAZINE INHIBITOR
Descriptor:Cathepsin K, 3,5-dioxo-4-(3-piperidin-1-ylpropyl)-2-[3-(trifluoromethyl)phenyl]-2,3,4,5-tetrahydro-1,2,4-triazine-6-carbonitrile
Authors:Uitdehaag, J.C.M., van Zeeland, M.
Deposit date:2009-12-01
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Dioxo-triazines as a novel series of cathepsin K inhibitors
Bioorg.Med.Chem.Lett., 20, 2010
3KWZ
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CATHEPSIN K IN COMPLEX WITH A NON-SELECTIVE 2-CYANO-PYRIMIDINE INHIBITOR
Descriptor:Cathepsin K, SULFATE ION, 4-(3-piperidin-1-ylpropyl)-6-[3-(trifluoromethyl)phenyl]pyrimidine-2-carbonitrile
Authors:Fradera, X., Uitdehaag, J.C.M., van Zeeland, M.
Deposit date:2009-12-02
Release date:2010-03-02
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Design and optimization of a series of novel 2-cyano-pyrimidines as cathepsin K inhibitors
Bioorg.Med.Chem.Lett., 20, 2010
3KX1
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CATHEPSIN K IN COMPLEX WITH A SELECTIVE 2-CYANO-PYRIMIDINE INHIBITOR
Descriptor:Cathepsin K, 4-cycloheptyl-6-(3-piperidin-1-ylpropyl)pyrimidine-2-carbonitrile, SULFATE ION
Authors:Fradera, X., Uitdehaag, J.C.M., van Zeeland, M.
Deposit date:2009-12-02
Release date:2010-03-02
Last modified:2014-02-12
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Design and optimization of a series of novel 2-cyano-pyrimidines as cathepsin K inhibitors
Bioorg.Med.Chem.Lett., 20, 2010
3N3G
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4-(3-TRIFLUOROMETHYLPHENYL)-PYRIMIDINE-2-CARBONITRILE AS CATHEPSIN S INHIBITORS: N3, NOT N1 IS CRITICALLY IMPORTANT
Descriptor:Cathepsin S, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Fradera, X., Uitdehaag, J.C.M., van Zeeland, M.
Deposit date:2010-05-20
Release date:2010-07-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:4-(3-Trifluoromethylphenyl)-pyrimidine-2-carbonitrile as cathepsin S inhibitors: N3, not N1 is critically important.
Bioorg.Med.Chem.Lett., 20, 2010
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