Author results

2AYQ
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3-ISOPROPYLMALATE DEHYDROGENASE FROM THE MODERATE FACULTATIVE THERMOPHILE, BACILLUS COAGULANS
Descriptor:3-ISOPROPYLMALATE DEHYDROGENASE
Authors:Tsuchiya, D., Takenaka, A.
Deposit date:1998-02-20
Release date:1998-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of 3-isopropylmalate dehydrogenase from the moderate facultative thermophile, Bacillus coagulans: two strategies for thermostabilization of protein structures.
J.Biochem.(Tokyo), 122, 1997
2D3T
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FATTY ACID BETA-OXIDATION MULTIENZYME COMPLEX FROM PSEUDOMONAS FRAGI, FORM V
Descriptor:Fatty oxidation complex alpha subunit, 3-ketoacyl-CoA thiolase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Tsuchiya, D., Shimizu, N., Ishikawa, M., Suzuki, Y., Morikawa, K.
Deposit date:2005-10-01
Release date:2006-02-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Ligand-Induced Domain Rearrangement of Fatty Acid beta-Oxidation Multienzyme Complex
Structure, 14, 2006
1ISR
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CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 COMPLEXED WITH GLUTAMATE AND GADOLINIUM ION
Descriptor:Metabotropic Glutamate Receptor subtype 1, GLUTAMIC ACID, GADOLINIUM ATOM
Authors:Tsuchiya, D., Kunishima, N., Kamiya, N., Jingami, H., Morikawa, K.
Deposit date:2001-12-21
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+.
Proc.Natl.Acad.Sci.USA, 99, 2002
1ISS
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CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 COMPLEXED WITH AN ANTAGONIST
Descriptor:Metabotropic Glutamate Receptor subtype 1, (S)-(ALPHA)-METHYL-4-CARBOXYPHENYLGLYCINE
Authors:Tsuchiya, D., Kunishima, N., Kamiya, N., Jingami, H., Morikawa, K.
Deposit date:2001-12-21
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+.
Proc.Natl.Acad.Sci.USA, 99, 2002
1A2Y
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HEN EGG WHITE LYSOZYME, D18A MUTANT, IN COMPLEX WITH MOUSE MONOCLONAL ANTIBODY D1.3
Descriptor:IGG1-KAPPA D1.3 FV (LIGHT CHAIN), IGG1-KAPPA D1.3 FV (HEAVY CHAIN), LYSOZYME, ...
Authors:Tsuchiya, D., Mariuzza, R.A.
Deposit date:1998-01-13
Release date:1998-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A mutational analysis of binding interactions in an antigen-antibody protein-protein complex.
Biochemistry, 37, 1998
2DHR
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WHOLE CYTOSOLIC REGION OF ATP-DEPENDENT METALLOPROTEASE FTSH (G399L)
Descriptor:FtsH, ADENOSINE-5'-DIPHOSPHATE
Authors:Suno, R., Niwa, H., Tsuchiya, D., Zhang, X., Yoshida, M., Morikawa, K.
Deposit date:2006-03-24
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Structure of the Whole Cytosolic Region of ATP-Dependent Protease FtsH
Mol.Cell, 22, 2006
2DI4
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CRYSTAL STRUCTURE OF THE FTSH PROTEASE DOMAIN
Descriptor:Cell division protein ftsH homolog, MERCURY (II) ION
Authors:Suno, R., Niwa, H., Tsuchiya, D., Zhang, X., Yoshida, M., Morikawa, K.
Deposit date:2006-03-28
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structure of the Whole Cytosolic Region of ATP-Dependent Protease FtsH
Mol.Cell, 22, 2006
4EIW
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WHOLE CYTOSOLIC REGION OF ATP-DEPENDENT METALLOPROTEASE FTSH (G399L)
Descriptor:ATP-dependent zinc metalloprotease FtsH, ADENOSINE-5'-DIPHOSPHATE
Authors:Suno, R., Niwa, H., Tsuchiya, D., Yoshida, M., Morikawa, K.
Deposit date:2012-04-06
Release date:2012-06-06
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Structure of the whole cytosolic region of ATP-dependent protease FtsH
Mol.Cell, 22, 2006
1GEF
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CRYSTAL STRUCTURE OF THE ARCHAEAL HOLLIDAY JUNCTION RESOLVASE HJC
Descriptor:HOLLIDAY JUNCTION RESOLVASE, SULFATE ION
Authors:Nishino, T., Komori, K., Tsuchiya, D., Ishino, Y., Morikawa, K.
Deposit date:2000-11-08
Release date:2001-03-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition.
Structure, 9, 2001
1IO2
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CRYSTAL STRUCTURE OF TYPE 2 RIBONUCLEASE H FROM HYPERTHERMOPHILIC ARCHAEON, THERMOCOCCUS KODAKARAENSIS KOD1
Descriptor:RIBONUCLEASE HII
Authors:Muroya, A., Tsuchiya, D., Ishikawa, M., Haruki, M., Morikawa, M.
Deposit date:2000-12-28
Release date:2001-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Catalytic center of an archaeal type 2 ribonuclease H as revealed by X-ray crystallographic and mutational analyses.
Protein Sci., 10, 2001
1IXR
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RUVA-RUVB COMPLEX
Descriptor:Holliday junction DNA helicase ruvA, RuvB, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Yamada, K., Miyata, T., Tsuchiya, D., Oyama, T., Fujiwara, Y., Ohnishi, T., Iwasaki, H., Shinagawa, H., Ariyoshi, M., Mayanagi, K., Morikawa, K.
Deposit date:2002-07-04
Release date:2002-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal Structure of the RuvA-RuvB Complex: A Structural Basis for the Holliday Junction Migrating Motor Machinery
Mol.Cell, 10, 2002
1IXS
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STRUCTURE OF RUVB COMPLEXED WITH RUVA DOMAIN III
Descriptor:Holliday junction DNA helicase ruvA, RuvB, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Yamada, K., Miyata, T., Tsuchiya, D., Oyama, T., Fujiwara, Y., Ohnishi, T., Iwasaki, H., Shinagawa, H., Ariyoshi, M., Mayanagi, K., Morikawa, K.
Deposit date:2002-07-04
Release date:2002-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal Structure of the RuvA-RuvB Complex: A Structural Basis for the Holliday Junction Migrating Motor Machinery
Mol.Cell, 10, 2002
1IXZ
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CRYSTAL STRUCTURE OF THE FTSH ATPASE DOMAIN FROM THERMUS THERMOPHILUS
Descriptor:ATP-dependent metalloprotease FtsH, MERCURY (II) ION, SULFATE ION
Authors:Niwa, H., Tsuchiya, D., Makyio, H., Yoshida, M., Morikawa, K.
Deposit date:2002-07-10
Release date:2002-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Hexameric ring structure of the ATPase domain of the membrane-integrated metalloprotease FtsH from Thermus thermophilus HB8
Structure, 10, 2002
1IY0
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CRYSTAL STRUCTURE OF THE FTSH ATPASE DOMAIN WITH AMP-PNP FROM THERMUS THERMOPHILUS
Descriptor:ATP-dependent metalloprotease FtsH, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Niwa, H., Tsuchiya, D., Makyio, H., Yoshida, M., Morikawa, K.
Deposit date:2002-07-10
Release date:2002-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Hexameric ring structure of the ATPase domain of the membrane-integrated metalloprotease FtsH from Thermus thermophilus HB8
Structure, 10, 2002
1IY1
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CRYSTAL STRUCTURE OF THE FTSH ATPASE DOMAIN WITH ADP FROM THERMUS THERMOPHILUS
Descriptor:ATP-dependent metalloprotease FtsH, ADENOSINE-5'-DIPHOSPHATE
Authors:Niwa, H., Tsuchiya, D., Makyio, H., Yoshida, M., Morikawa, K.
Deposit date:2002-07-10
Release date:2002-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Hexameric ring structure of the ATPase domain of the membrane-integrated metalloprotease FtsH from Thermus thermophilus HB8
Structure, 10, 2002
1IY2
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CRYSTAL STRUCTURE OF THE FTSH ATPASE DOMAIN FROM THERMUS THERMOPHILUS
Descriptor:ATP-dependent metalloprotease FtsH, SULFATE ION
Authors:Niwa, H., Tsuchiya, D., Makyio, H., Yoshida, M., Morikawa, K.
Deposit date:2002-07-10
Release date:2002-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Hexameric ring structure of the ATPase domain of the membrane-integrated metalloprotease FtsH from Thermus thermophilus HB8
Structure, 10, 2002
1WDK
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FATTY ACID BETA-OXIDATION MULTIENZYME COMPLEX FROM PSEUDOMONAS FRAGI, FORM I (NATIVE2)
Descriptor:Fatty oxidation complex alpha subunit, 3-ketoacyl-CoA thiolase, ZINC ION, ...
Authors:Ishikawa, M., Tsuchiya, D., Oyama, T., Tsunaka, Y., Morikawa, K.
Deposit date:2004-05-17
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for channelling mechanism of a fatty acid beta-oxidation multienzyme complex
Embo J., 23, 2004
1WDL
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FATTY ACID BETA-OXIDATION MULTIENZYME COMPLEX FROM PSEUDOMONAS FRAGI, FORM II (NATIVE4)
Descriptor:Fatty oxidation complex alpha subunit, 3-ketoacyl-CoA thiolase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Ishikawa, M., Tsuchiya, D., Oyama, T., Tsunaka, Y., Morikawa, K.
Deposit date:2004-05-17
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural basis for channelling mechanism of a fatty acid beta-oxidation multienzyme complex
Embo J., 23, 2004
1WDM
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FATTY ACID BETA-OXIDATION MULTIENZYME COMPLEX FROM PSEUDOMONAS FRAGI, FORM I (NATIVE3)
Descriptor:Fatty oxidation complex alpha subunit, 3-ketoacyl-CoA thiolase, ZINC ION, ...
Authors:Ishikawa, M., Tsuchiya, D., Oyama, T., Tsunaka, Y., Morikawa, K.
Deposit date:2004-05-17
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structural basis for channelling mechanism of a fatty acid beta-oxidation multienzyme complex
Embo J., 23, 2004
1WP9
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CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS HEF HELICASE DOMAIN
Descriptor:ATP-dependent RNA helicase, putative, PHOSPHATE ION
Authors:Nishino, T., Komori, K., Tsuchiya, D., Ishino, Y., Morikawa, K.
Deposit date:2004-08-31
Release date:2005-02-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure and Functional Implications of Pyrococcus furiosus Hef Helicase Domain Involved in Branched DNA Processing
Structure, 13, 2005
1YXJ
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CRYSTAL STRUCTURE OF HUMAN LECTIN-LIKE OXIDIZED LOW-DENSITY LIPOPROTEIN RECEPTOR 1 (LOX-1) AT LOW PH
Descriptor:oxidised low density lipoprotein (lectin-like) receptor 1, 1,2-ETHANEDIOL
Authors:Ohki, I., Ishigaki, T., Oyama, T., Matsunaga, S., Xie, Q., Ohnishi-Kameyama, M., Murata, T., Tsuchiya, D., Machida, S., Morikawa, K., Tate, S.
Deposit date:2005-02-22
Release date:2005-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structure of human lectin-like, oxidized low-density lipoprotein receptor 1 ligand binding domain and its ligand recognition mode to OxLDL.
Structure, 13, 2005
1YXK
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CRYSTAL STRUCTURE OF HUMAN LECTIN-LIKE OXIDIZED LOW-DENSITY LIPOPROTEIN RECEPTOR 1 (LOX-1) DISULFIDE-LINKED DIMER
Descriptor:oxidised low density lipoprotein (lectin-like) receptor 1
Authors:Ohki, I., Ishigaki, T., Oyama, T., Matsunaga, S., Xie, Q., Ohnishi-Kameyama, M., Murata, T., Tsuchiya, D., Machida, S., Morikawa, K., Tate, S.
Deposit date:2005-02-22
Release date:2005-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human lectin-like, oxidized low-density lipoprotein receptor 1 ligand binding domain and its ligand recognition mode to OxLDL.
Structure, 13, 2005
2E4U
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CRYSTAL STRUCTURE OF THE EXTRACELLULAR REGION OF THE GROUP II METABOTROPIC GLUTAMATE RECEPTOR COMPLEXED WITH L-GLUTAMATE
Descriptor:Metabotropic glutamate receptor 3, N-ACETYL-D-GLUCOSAMINE, GLUTAMIC ACID
Authors:Muto, T., Tsuchiya, D., Morikawa, K., Jingami, H.
Deposit date:2006-12-17
Release date:2007-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structures of the extracellular regions of the group II/III metabotropic glutamate receptors
Proc.Natl.Acad.Sci.Usa, 104, 2007
2E4V
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CRYSTAL STRUCTURE OF THE EXTRACELLULAR REGION OF THE GROUP II METABOTROPIC GLUTAMATE RECEPTOR COMPLEXED WITH DCG-IV
Descriptor:Metabotropic glutamate receptor 3, N-ACETYL-D-GLUCOSAMINE, (1R,2R)-3-[(S)-amino(carboxy)methyl]cyclopropane-1,2-dicarboxylic acid
Authors:Muto, T., Tsuchiya, D., Morikawa, K., Jingami, H.
Deposit date:2006-12-17
Release date:2007-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of the extracellular regions of the group II/III metabotropic glutamate receptors
Proc.Natl.Acad.Sci.Usa, 104, 2007
2E4W
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CRYSTAL STRUCTURE OF THE EXTRACELLULAR REGION OF THE GROUP II METABOTROPIC GLUTAMATE RECEPTOR COMPLEXED WITH 1S,3S-ACPD
Descriptor:Metabotropic glutamate receptor 3, N-ACETYL-D-GLUCOSAMINE, (1S,3S)-1-aminocyclopentane-1,3-dicarboxylic acid
Authors:Muto, T., Tsuchiya, D., Morikawa, K., Jingami, H.
Deposit date:2006-12-17
Release date:2007-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of the extracellular regions of the group II/III metabotropic glutamate receptors
Proc.Natl.Acad.Sci.Usa, 104, 2007
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