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3VWI
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HIGH RESOLUTION CRYSTAL STRUCTURE OF FRAC IN THE MONOMERIC FORM
Descriptor:Fragaceatoxin C, CHLORIDE ION, AMMONIUM ION, ...
Authors:Tanaka, K., Morante, K., Caaveiro, J.M.M., Gonzalez-Manas, J.M., Tsumoto, K.
Deposit date:2012-08-23
Release date:2013-08-28
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
5YU8
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COFILIN DECORATED ACTIN FILAMENT
Descriptor:Actin, alpha skeletal muscle, Cofilin-2, ...
Authors:Tanaka, K., Narita, A.
Deposit date:2017-11-21
Release date:2018-05-23
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis for cofilin binding and actin filament disassembly
Nat Commun, 9, 2018
3W9P
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CRYSTAL STRUCTURE OF MONOMERIC FRAC (SECOND CRYSTAL FORM)
Descriptor:Fragaceatoxin C
Authors:Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.
Deposit date:2013-04-09
Release date:2014-04-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSL
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CRYSTAL STRUCTURE OF FRAC WITH POC BOUND (CRYSTAL FORM I)
Descriptor:Fragaceatoxin C, PHOSPHOCHOLINE, FORMIC ACID, ...
Authors:Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2016-08-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSN
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CRYSTAL STRUCTURE OF FRAC WITH POC BOUND (CRYSTAL FORM II)
Descriptor:Fragaceatoxin C, PHOSPHOCHOLINE, SULFATE ION, ...
Authors:Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2016-08-03
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSO
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CRYSTAL STRUCTURE OF FRAC WITH DHPC BOUND (CRYSTAL FORM I)
Descriptor:Fragaceatoxin C, 1,2-dihexanoyl-sn-glycero-3-phosphocholine, SULFATE ION, ...
Authors:Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2016-08-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSP
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CRYSTAL STRUCTURE OF FRAC WITH DHPC BOUND (CRYSTAL FORM II)
Descriptor:Fragaceatoxin C, 1,2-dihexanoyl-sn-glycero-3-phosphocholine, SULFATE ION, ...
Authors:Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2016-08-03
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSQ
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CRYSTAL STRUCTURE OF FRAC WITH DHPC BOUND (CRYSTAL FORM III)
Descriptor:Fragaceatoxin C, 1,2-dihexanoyl-sn-glycero-3-phosphocholine, PHOSPHOCHOLINE, ...
Authors:Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2016-08-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
4TSY
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CRYSTAL STRUCTURE OF FRAC WITH LIPIDS
Descriptor:Fragaceatoxin C, 2-[[(E,2S,3R)-2-(hexanoylamino)-3-oxidanyl-dec-4-enoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium, SULFATE ION, ...
Authors:Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.
Deposit date:2014-06-19
Release date:2015-03-04
Last modified:2016-08-03
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
5BPG
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CRYSTAL STRUCTURE OF THE WATER-SOLUBLE FRAC PURIFIED STARTING FROM THE TRANS-MEMBRANE PORE
Descriptor:Fragaceatoxin C, CHLORIDE ION, GLYCEROL
Authors:Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.
Deposit date:2015-05-28
Release date:2015-11-18
Last modified:2015-12-09
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Bidirectional Transformation of a Metamorphic Protein between the Water-Soluble and Transmembrane Native States
Biochemistry, 54, 2015
2RJ2
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CRYSTAL STRUCTURE OF THE SUGAR RECOGNIZING SCF UBIQUITIN LIGASE AT 1.7 RESOLUTION
Descriptor:F-box only protein 2, NICKEL (II) ION, CHLORIDE ION
Authors:Vaijayanthimala, S., Velmurugan, D., Mizushima, T., Yamane, T., Yoshida, Y., Tanaka, K.
Deposit date:2007-10-14
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
To be Published
3ACP
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CRYSTAL STRUCTURE OF YEAST RPN14, A CHAPERONE OF THE 19S REGULATORY PARTICLE OF THE PROTEASOME
Descriptor:WD repeat-containing protein YGL004C
Authors:Kim, S., Saeki, Y., Suzuki, A., Takagi, K., Fukunaga, K., Yamane, T., Kato, K., Tanaka, K., Mizushima, T.
Deposit date:2010-01-08
Release date:2010-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of yeast Rpn14, a chaperone of the 19S regulatory particle of the proteasome
J.Biol.Chem., 285, 2010
3WSO
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CRYSTAL STRUCTURE OF THE SKP1-FBG3 COMPLEX
Descriptor:F-box only protein 44, S-phase kinase-associated protein 1
Authors:Kumanomidou, T., Nishio, K., Takagi, K., Nakagawa, T., Suzuki, A., Yamane, T., Tokunaga, F., Iwai, K., Murakami, A., Yoshida, Y., Tanaka, K., Mizushima, T.
Deposit date:2014-03-18
Release date:2015-03-25
Last modified:2015-11-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Structural Differences between a Glycoprotein Specific F-Box Protein Fbs1 and Its Homologous Protein FBG3
Plos One, 10, 2015
1UMH
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STRUCTURAL BASIS OF SUGAR-RECOGNIZING UBIQUITIN LIGASE
Descriptor:F-box only protein 2, NICKEL (II) ION
Authors:Mizushima, T., Hirao, T., Yoshida, Y., Lee, S.J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K., Tsukihara, T., Tanaka, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-01
Release date:2004-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of sugar-recognizing ubiquitin ligase
NAT.STRUCT.MOL.BIOL., 11, 2004
1UMI
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STRUCTURAL BASIS OF SUGAR-RECOGNIZING UBIQUITIN LIGASE
Descriptor:F-box only protein 2, 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE, N-ACETYL-D-GLUCOSAMINE
Authors:Mizushima, T., Hirao, T., Yoshida, Y., Lee, S.J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K., Tsukihara, T., Tanaka, K.
Deposit date:2003-10-01
Release date:2004-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of sugar-recognizing ubiquitin ligase
NAT.STRUCT.MOL.BIOL., 11, 2004
1WXS
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SOLUTION STRUCTURE OF UFM1, A UBIQUITIN-FOLD MODIFIER
Descriptor:Ubiquitin-fold Modifier 1
Authors:Sasakawa, H., Sakata, E., Yamaguchi, Y., Komatsu, M., Tatsumi, K., Kominami, E., Tanaka, K., Kato, K.
Deposit date:2005-02-01
Release date:2006-04-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and dynamics of Ufm1, a ubiquitin-fold modifier 1
Biochem.Biophys.Res.Commun., 343, 2006
2Z5B
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CRYSTAL STRUCTURE OF A NOVEL CHAPERONE COMPLEX FOR YEAST 20S PROTEASOME ASSEMBLY
Descriptor:Protein YPL144W, Uncharacterized protein YLR021W
Authors:Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K.
Deposit date:2007-07-03
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
2Z5C
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CRYSTAL STRUCTURE OF A NOVEL CHAPERONE COMPLEX FOR YEAST 20S PROTEASOME ASSEMBLY
Descriptor:Protein YPL144W, Uncharacterized protein YLR021W, Proteasome component PUP2
Authors:Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K.
Deposit date:2007-07-03
Release date:2008-01-22
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
2Z5E
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CRYSTAL STRUCTURE OF PROTEASOME ASSEMBLING CHAPERONE 3
Descriptor:Proteasome Assembling Chaperone 3
Authors:Okamoto, K., Kurimoto, E., Sakata, E., Suzuki, A., Yamane, T., Hirano, Y., Murata, S., Tanaka, K., Kato, K.
Deposit date:2007-07-06
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
2Z6O
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CRYSTAL STRUCTURE OF THE UFC1, UFM1 CONJUGATING ENZYME 1
Descriptor:Ufm1-conjugating enzyme 1, MAGNESIUM ION
Authors:Mizushima , T., Tatsumi, K., Ozaki, Y., Kawakami, T., Suzuki, A., Ogasahara, K., Komatsu, M., Kominami, E., Tanaka, K., Yamane, T.
Deposit date:2007-08-06
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Ufc1, the Ufm1-conjugating enzyme
Biochem.Biophys.Res.Commun., 362, 2007
2Z6P
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CRYSTAL STRUCTURE OF THE UFC1, UFM1 CONJUGATING ENZYME 1
Descriptor:Ufm1-conjugating enzyme 1
Authors:Mizushima , T., Tatsumi, K., Ozaki, Y., Kawakami, T., Suzuki, A., Ogasahara, K., Komatsu, M., Kominami, E., Tanaka, K., Yamane, T.
Deposit date:2007-08-06
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Ufc1, the Ufm1-conjugating enzyme
Biochem.Biophys.Res.Commun., 362, 2007
3A7S
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CATALYTIC DOMAIN OF UCH37
Descriptor:Ubiquitin carboxyl-terminal hydrolase isozyme L5, CHLORIDE ION
Authors:Nishio, K., Kim, S.W., Kawai, K., Mizushima, T., Yamane, T., Hamazaki, J., Murata, S., Tanaka, K.
Deposit date:2009-10-04
Release date:2009-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the de-ubiquitinating enzyme UCH37 (human UCH-L5) catalytic domain
Biochem.Biophys.Res.Commun., 2009
3VL1
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CRYSTAL STRUCTURE OF YEAST RPN14
Descriptor:26S proteasome regulatory subunit RPN14
Authors:Kim, S., Nishide, A., Saeki, Y., Takagi, K., Tanaka, K., Kato, K., Mizushima, T.
Deposit date:2011-11-28
Release date:2012-05-02
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:New crystal structure of the proteasome-dedicated chaperone Rpn14 at 1.6 A resolution
Acta Crystallogr.,Sect.F, 68, 2012
3VLD
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CRYSTAL STRUCTURE OF YEAST PROTEASOME INTERACTING PROTEIN
Descriptor:DNA mismatch repair protein HSM3
Authors:Takagi, K., Kim, S., Kato, K., Tanaka, K., Saeki, Y., Mizushima, T.
Deposit date:2011-12-01
Release date:2012-02-22
Last modified:2012-04-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for specific recognition of Rpt1, an ATPase subunit of the 26S proteasome, by a proteasome-dedicated chaperone Hsm3
J.Biol.Chem., 287, 2012
3VLE
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CRYSTAL STRUCTURE OF YEAST PROTEASOME INTERACTING PROTEIN
Descriptor:DNA mismatch repair protein HSM3
Authors:Takagi, K., Kim, S., Kato, K., Tanaka, K., Saeki, Y., Mizushima, T.
Deposit date:2011-12-01
Release date:2012-02-22
Last modified:2012-04-18
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Structural basis for specific recognition of Rpt1, an ATPase subunit of the 26S proteasome, by a proteasome-dedicated chaperone Hsm3
J.Biol.Chem., 287, 2012