Author results

2ZUL
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS 16S RRNA METHYLTRANSFERASE RSMC (TTHA0533) IN COMPLEX WITH COFACTOR S-ADENOSYL-L-METHIONINE
Descriptor:Probable ribosomal RNA small subunit methyltransferase, S-ADENOSYLMETHIONINE
Authors:Wang, H., Kawazoe, M., Tatsuguchi, A., Naoe, C., Takemoto, C., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-10-21
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Thermus thermophilus 16S rRNA methyltransferase RsmC (TTHA0533) in complex with cofactor S-adenosyl-L-Methionine
To be Published
2ZWV
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS 16S RRNA METHYLTRANSFERASE RSMC (TTHA0533)
Descriptor:Probable ribosomal RNA small subunit methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Wang, H., Kawazoe, M., Kaminishi, T., Tatsuguchi, A., Naoe, C., Terada, T., Shirouzu, M., Takemoto, C., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-12-18
Release date:2009-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Thermus thermophilus 16S rRNA methyltransferase RsmC (TTHA0533)
to be published
5NO2
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RSGA-GDPNP BOUND TO THE 30S RIBOSOMAL SUBUNIT (RSGA ASSEMBLY INTERMEDIATE)
Descriptor:16S ribosomal RNA, 30S ribosomal protein S4, 30S ribosomal protein S5, ...
Authors:Lopez-Alonso, J.P., Kaminishi, T., Kikuchi, T., Hirata, Y., Iturrioz, I., Dhimole, N., Schedlbauer, A., Hase, Y., Goto, S., Kurita, D., Muto, A., Zhou, S., Naoe, C., Mills, D.J., Gil-Carton, D., Takemoto, C., Himeno, H., Fucini, P., Connell, S.R.
Deposit date:2017-04-10
Release date:2017-05-24
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (5.16 Å)
Cite:RsgA couples the maturation state of the 30S ribosomal decoding center to activation of its GTPase pocket.
Nucleic Acids Res., 45, 2017
5NO3
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RSGA-GDPNP BOUND TO THE 30S RIBOSOMAL SUBUNIT (RSGA ASSEMBLY INTERMEDIATE WITHOUT US3)
Descriptor:16S ribosomal RNA, 30S ribosomal protein S2, 30S ribosomal protein S4, ...
Authors:Lopez-Alonso, J.P., Kaminishi, T., Kikuchi, T., Hirata, Y., Iturrioz, I., Dhimole, N., Schedlbauer, A., Hase, Y., Goto, S., Kurita, D., Muto, A., Zhou, S., Naoe, C., Mills, D.J., Gil-Carton, D., Takemoto, C., Himeno, H., Fucini, P., Connell, S.R.
Deposit date:2017-04-10
Release date:2017-05-31
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (5.16 Å)
Cite:RsgA couples the maturation state of the 30S ribosomal decoding center to activation of its GTPase pocket.
Nucleic Acids Res., 45, 2017
5NO4
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RSGA-GDPNP BOUND TO THE 30S RIBOSOMAL SUBUNIT (RSGA ASSEMBLY INTERMEDIATE WITH US3)
Descriptor:16S ribosomal RNA, 30S ribosomal protein S3, 30S ribosomal protein S4, ...
Authors:Lopez-Alonso, J.P., Kaminishi, T., Kikuchi, T., Hirata, Y., Iturrioz, I., Dhimole, N., Schedlbauer, A., Hase, Y., Goto, S., Kurita, D., Muto, A., Zhou, S., Naoe, C., Mills, D.J., Gil-Carton, D., Takemoto, C., Himeno, H., Fucini, P., Connell, S.R.
Deposit date:2017-04-10
Release date:2017-05-31
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (5.16 Å)
Cite:RsgA couples the maturation state of the 30S ribosomal decoding center to activation of its GTPase pocket.
Nucleic Acids Res., 45, 2017
2R1G
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COORDINATES OF THE THERMUS THERMOPHILUS 30S COMPONENTS NEIGHBORING RBFA AS OBTAINED BY FITTING INTO THE CRYO-EM MAP OF A 30S-RBFA COMPLEX
Descriptor:16S RIBOSOMAL RNA HELIX 1, 16S RIBOSOMAL RNA HELIX 18, 16S RIBOSOMAL RNA HELIX 27, ...
Authors:Datta, P.P., Wilson, D.N., Kawazoe, M., Swami, N.K., Kaminishi, T., Sharma, M.R., Booth, T.M., Takemoto, C., Fucini, P., Yokoyama, S., Agrawal, R.K.
Deposit date:2007-08-22
Release date:2008-03-18
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (12.5 Å)
Cite:Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
1UEB
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CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR P FROM THERMUS THERMOPHILUS HB8
Descriptor:elongation factor P
Authors:Hanawa-Suetsugu, K., Sekine, S., Sakai, H., Hori-Takemoto, C., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-09
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of elongation factor P from Thermus thermophilus HB8
Proc.Natl.Acad.Sci.USA, 101, 2004
1WF3
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CRYSTAL STRUCTURE OF GTP-BINDING PROTEIN TT1341 FROM THERMUS THERMOPHILUS HB8
Descriptor:GTP-binding protein, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Kawazoe, M., Hori-Takemoto, C., Kaminishi, T., Sekine, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-25
Release date:2004-11-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8
To be Published
2CWN
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CRYSTAL STRUCTURE OF MOUSE TRANSALDOLASE
Descriptor:Transaldolase
Authors:Handa, N., Arai, R., Nishino, A., Uchikubo, T., Takemoto, C., Morita, S., Kinoshita, Y., Nagano, Y., Uda, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-22
Release date:2005-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of mouse transaldolase
To be Published
2CXH
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CRYSTAL STRUCTURE OF PROBABLE RIBOSOMAL BIOGENESIS PROTEIN FROM AEROPYRUM PERNIX K1
Descriptor:Probable brix-domain ribosomal biogenesis protein
Authors:Kawazoe, M., Takemoto, C., Hanawa-Suetsugu, K., Kaminishi, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-29
Release date:2005-12-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
To be Published
2CY2
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CRYSTAL STRUCTURE OF TTHA1209 IN COMPLEX WITH ACETYL COENZYME A
Descriptor:probable acetyltransferase, ACETYL COENZYME *A
Authors:Kaminishi, T., Takemoto, C., Uchikubo-Kamo, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-04
Release date:2006-01-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of TTHA1209 in complex with acetyl coenzyme A
To be Published
2DOG
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SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF RIMM FROM THERMUS THERMOPHILUS HB8
Descriptor:Probable 16S rRNA-processing protein rimM
Authors:Suzuki, S., Matsumoto, E., Tatsuguchi, A., Kawazoe, M., Kaminishi, T., Takemoto, C., Shirouzu, M., Muto, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-28
Release date:2007-04-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural characterization of the ribosome maturation protein, RimM
J.Bacteriol., 189, 2007
2DUC
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CRYSTAL STRUCTURE OF SARS CORONAVIRUS MAIN PROTEINASE(3CLPRO)
Descriptor:Replicase polyprotein 1ab
Authors:Wang, H., Kim, Y.T., Muramatsu, T., Takemoto, C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-21
Release date:2007-07-24
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:SARS-CoV 3CL protease cleaves its C-terminal autoprocessing site by novel subsite cooperativity
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
2DY1
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CRYSTAL STRUCTURE OF EF-G-2 FROM THERMUS THERMOPHILUS
Descriptor:Elongation factor G, MAGNESIUM ION, GUANOSINE-5'-TRIPHOSPHATE
Authors:Wang, H., Takemoto, C., Murayama, K., Terada, T., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-04
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of EF-G-2 from Thermus thermophilus
To be Published
2DYI
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CRYSTAL STRUCTURE OF 16S RIBOSOMAL RNA PROCESSING PROTEIN RIMM FROM THERMUS THERMOPHILUS HB8
Descriptor:Probable 16S rRNA-processing protein rimM
Authors:Kawazoe, M., Takemoto, C., Kaminishi, T., Tatsuguchi, A., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-14
Release date:2007-03-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8
To be published
2DYJ
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CRYSTAL STRUCTURE OF RIBOSOME-BINDING FACTOR A FROM THERMUS THERMOPHILUS HB8
Descriptor:Ribosome-binding factor A
Authors:Kawazoe, M., Takemoto, C., Nakayama-Ushikoshi, R., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-14
Release date:2007-03-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
2DYK
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CRYSTAL STRUCTURE OF N-TERMINAL GTP-BINDING DOMAIN OF ENGA FROM THERMUS THERMOPHILUS HB8
Descriptor:GTP-binding protein, GUANOSINE-5'-DIPHOSPHATE
Authors:Kawazoe, M., Takemoto, C., Fusatomi, E., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-14
Release date:2007-03-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal structure of N-terminal GTP-binding domain of EngA from Thermus thermophilus HB8
to be published
2E0T
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CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF DUAL SPECIFICITY PHOSPHATASE 26, MS0830 FROM HOMO SAPIENS
Descriptor:Dual specificity phosphatase 26
Authors:Xie, Y., Kishishita, S., Murayama, K., Hori-Takemoto, C., Chen, L., Liu, Z.J., Wang, B.C., Shirozu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-13
Release date:2007-10-16
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:High-resolution crystal structure of the catalytic domain of human dual-specificity phosphatase 26.
Acta Crystallogr.,Sect.D, 69, 2013
2E5L
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A SNAPSHOT OF THE 30S RIBOSOMAL SUBUNIT CAPTURING MRNA VIA THE SHINE- DALGARNO INTERACTION
Descriptor:16S ribosomal RNA, 5'-R(*GP*AP*AP*AP*GP*A)-3', 30S ribosomal protein S2, ...
Authors:Kaminishi, T., Wilson, D.N., Takemoto, C., Harms, J.M., Kawazoe, M., Schluenzen, F., Hanawa-Suetsugu, K., Shirouzu, M., Fucini, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-21
Release date:2007-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine-Dalgarno interaction
Structure, 15, 2007
2E7V
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CRYSTAL STRUCTURE OF SEA DOMAIN OF TRANSMEMBRANE PROTEASE FROM MUS MUSCULUS
Descriptor:Transmembrane protease
Authors:Xie, Y., Kishishita, S., Murayama, K., Hori-Takemoto, C., Shirozu, M., Yokoyama, S., Chen, L., Liu, Z.J., Wang, B.C., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-15
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal structure of SEA domain of transmembrane protease from Mus musculus
To be Published
2EAQ
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CRYSTAL STRUCTURE OF PDZ DOMAIN OF KIAA0858 (LIM), MS0793 FROM HOMO SAPIENS
Descriptor:LIM domain only protein 7, NICKEL (II) ION
Authors:Xie, Y., Kishishita, S., Murayama, K., Takemoto, C., Shirozu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-31
Release date:2007-07-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Crystal structure of PDZ domain of KIAA0858 (LIM), MS0793 from Homo sapiens
To be Published
2KHE
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SOLUTION STRUCTURE OF THE BACTERIAL TOXIN RELE FROM THERMUS THERMOPHILUS HB8
Descriptor:Toxin-like protein
Authors:Suzuki, S., Kawazoe, M., Kaminishi, T., Takemoto, C., Muto, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-04-03
Release date:2010-03-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the Bacterial Toxin Rele from Thermus Thermophilus HB8
To be Published
2PA2
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CRYSTAL STRUCTURE OF HUMAN RIBOSOMAL PROTEIN L10 CORE DOMAIN
Descriptor:60S ribosomal protein L10, POTASSIUM ION
Authors:Nishimura, M., Kaminishi, T., Takemoto, C., Kawazoe, M., Yoshida, T., Tanaka, A., Sugano, S., Shirouzu, M., Ohkubo, T., Yokoyama, S., Kobayashi, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-27
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Human Ribosomal Protein L10 Core Domain Reveals Eukaryote-Specific Motifs in Addition to the Conserved Fold
J.Mol.Biol., 377, 2008
2R1C
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COORDINATES OF THE THERMUS THERMOPHILUS RIBOSOME BINDING FACTOR A (RBFA) HOMOLOGY MODEL AS FITTED INTO THE CRYO-EM MAP OF A 30S-RBFA COMPLEX
Descriptor:Ribosome-binding factor A
Authors:Datta, P.P., Wilson, D.N., Kawazoe, M., Swami, N.K., Kaminishi, T., Sharma, M.R., Booth, T.M., Takemoto, C., Fucini, P., Yokoyama, S., Agrawal, R.K.
Deposit date:2007-08-22
Release date:2008-03-18
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (12.5 Å)
Cite:Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
2YV5
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CRYSTAL STRUCTURE OF YJEQ FROM AQUIFEX AEOLICUS
Descriptor:YjeQ protein, ZINC ION, CHLORIDE ION, ...
Authors:Wang, H., Kaminishi, T., Hanawa-Suetsugu, K., Takemoto, C., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-09
Release date:2008-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of YjeQ from Aquifex aeolicus
To be Published
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