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3R2C
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CRYSTAL STRUCTURE OF ANTITERMINATION FACTORS NUSB AND NUSE IN COMPLEX WITH BOXA RNA
Descriptor:N utilization substance protein B, 30S ribosomal protein S10, 5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3', ...
Authors:Stagno, J.R., Ji, X.
Deposit date:2011-03-14
Release date:2011-06-22
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:Structural basis for RNA recognition by NusB and NusE in the initiation of transcription antitermination.
Nucleic Acids Res., 39, 2011
3R2D
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CRYSTAL STRUCTURE OF ANTITERMINATION FACTORS NUSB AND NUSE IN COMPLEX WITH DSRNA
Descriptor:N utilization substance protein B, 30S ribosomal protein S10, 5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3', ...
Authors:Stagno, J.R., Ji, X.
Deposit date:2011-03-14
Release date:2011-06-22
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Structural basis for RNA recognition by NusB and NusE in the initiation of transcription antitermination.
Nucleic Acids Res., 39, 2011
4EYA
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CRYSTAL STRUCTURE OF A PLECTONEMIC RNA SUPERCOIL
Descriptor:N utilization substance protein B homolog, RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3'), GLYCEROL, ...
Authors:Stagno, J.R., Ji, X.
Deposit date:2012-05-01
Release date:2012-06-20
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of a plectonemic RNA supercoil.
Nat Commun, 3, 2012
5E54
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TWO APO STRUCTURES OF THE ADENINE RIBOSWITCH APTAMER DOMAIN DETERMINED USING AN X-RAY FREE ELECTRON LASER
Descriptor:Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain, MAGNESIUM ION
Authors:Stagno, J.R., Wang, Y.-X., Liu, Y., Bhandari, Y.R., Conrad, C.E., Nelson, G., Li, C., Wendel, D.R., White, T.A., Barty, A., Tuckey, R.A., Zatsepin, N.A., Grant, T.D., Fromme, P., Tan, K., Ji, X., Spence, J.C.H.
Deposit date:2015-10-07
Release date:2016-11-23
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.
Nature, 541, 2017
5SWD
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STRUCTURE OF THE ADENINE RIBOSWITCH APTAMER DOMAIN IN AN INTERMEDIATE-BOUND STATE
Descriptor:Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain, ADENINE, ...
Authors:Stagno, J.R., Wang, Y.-X., Liu, Y., Bhandari, Y.R., Conrad, C.E., Nelson, G., Li, C., Wendel, D.R., White, T.A., Barty, A., Tuckey, R.A., Zatsepin, N.A., Grant, T.D., Fromme, P., Tan, K., Ji, X., Spence, J.C.H.
Deposit date:2016-08-08
Release date:2016-11-23
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.
Nature, 541, 2017
5SWE
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LIGAND-BOUND STRUCTURE OF ADENINE RIBOSWITCH APTAMER DOMAIN CONVERTED IN CRYSTAL FROM ITS LIGAND-FREE STATE USING LIGAND MIXING SERIAL FEMTOSECOND CRYSTALLOGRAPHY
Descriptor:Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain, ADENINE
Authors:Stagno, J.R., Wang, Y.-X., Liu, Y., Bhandari, Y.R., Conrad, C.E., Nelson, G., Li, C., Wendel, D.R., White, T.A., Barty, A., Tuckey, R.A., Zatsepin, N.A., Grant, T.D., Fromme, P., Tan, K., Ji, X., Spence, J.C.H.
Deposit date:2016-08-08
Release date:2016-11-23
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.
Nature, 541, 2017
4U5T
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CRYSTAL STRUCTURE OF VBP LEUCINE ZIPPER WITH BOUND ARYLSTIBONIC ACID
Descriptor:VBP leucine zipper, (2Z)-3-{3-[dihydroxy(oxido)-lambda~5~-stibanyl]phenyl}prop-2-enoic acid
Authors:Stagno, J.R., Ji, X.
Deposit date:2014-07-25
Release date:2014-08-06
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.301 Å)
Cite:P6981, an arylstibonic acid, is a novel low nanomolar inhibitor of cAMP response element-binding protein binding to DNA.
Mol.Pharmacol., 82, 2012
5KAL
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TERMINAL URIDYLYL TRANSFERASE 4 FROM TRYPANOSOMA BRUCEI WITH BOUND UTP AND UPU
Descriptor:RNA uridylyltransferase 4, RNA (5'-R(*UP*U)-3'), URIDINE 5'-TRIPHOSPHATE, ...
Authors:Stagno, J.R., Luecke, H., Afasizhev, R.
Deposit date:2016-06-01
Release date:2016-10-26
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:RNA Editing TUTase 1: structural foundation of substrate recognition, complex interactions and drug targeting.
Nucleic Acids Res., 44, 2016
5UZA
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ADENINE RIBOSWITCH APTAMER DOMAIN LABELLED WITH IODO-URIDINE BY POSITION-SELECTIVE LABELLING OF RNA (PLOR)
Descriptor:RNA (71-MER), ADENINE, MAGNESIUM ION
Authors:Liu, Y., Stagno, J.R., Wang, Y.-X.
Deposit date:2017-02-25
Release date:2018-02-28
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Incorporation of isotopic, fluorescent, and heavy-atom-modified nucleotides into RNAs by position-selective labeling of RNA.
Nat Protoc, 13, 2018
4XNR
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VIBRIO VULNIFICUS ADENINE RIBOSWITCH APTAMER DOMAIN, SYNTHESIZED BY POSITION-SELECTIVE LABELING OF RNA (PLOR), IN COMPLEX WITH ADENINE
Descriptor:Vibrio Vulnificus Adenine Riboswitch, ADENINE, MAGNESIUM ION
Authors:Zhang, J., Liu, Y., Wang, Y.-X., Ferre-D'Amare, A.R.
Deposit date:2015-01-16
Release date:2015-05-06
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Synthesis and applications of RNAs with position-selective labelling and mosaic composition.
Nature, 522, 2015
5HZD
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RNA EDITING TUTASE 1 FROM TRYPANOSOMA BRUCEI
Descriptor:3' terminal uridylyl transferase, ZINC ION, SULFATE ION, ...
Authors:Thore, S., Rajappa, L.T.
Deposit date:2016-02-02
Release date:2016-10-26
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:RNA Editing TUTase 1: structural foundation of substrate recognition, complex interactions and drug targeting.
Nucleic Acids Res., 44, 2016
5I49
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RNA EDITING TUTASE 1 FROM TRYPANOSOMA BRUCEI IN COMPLEX WITH UTP ANALOG UMPNPP
Descriptor:3' terminal uridylyl transferase, ZINC ION, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, ...
Authors:Thore, S., Rajappa, L.T.
Deposit date:2016-02-11
Release date:2016-11-09
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:RNA Editing TUTase 1: structural foundation of substrate recognition, complex interactions and drug targeting.
Nucleic Acids Res., 44, 2016
5IDO
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RNA EDITING TUTASE 1 FROM TRYPANOSOMA BRUCEI IN COMPLEX WITH UTP
Descriptor:3' terminal uridylyl transferase, URIDINE 5'-TRIPHOSPHATE, ZINC ION, ...
Authors:Thore, S., Rajappa, L.T.
Deposit date:2016-02-24
Release date:2016-10-26
Last modified:2016-12-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:RNA Editing TUTase 1: structural foundation of substrate recognition, complex interactions and drug targeting.
Nucleic Acids Res., 44, 2016