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1V9D
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CRYSTAL STRUCTURE OF THE CORE FH2 DOMAIN OF MOUSE MDIA1
Descriptor:Diaphanous protein homolog 1, SULFATE ION
Authors:Shimada, A., Nyitrai, M., Vetter, I.R., Kuhlmann, D., Bugyi, B., Narumiya, S., Geeves, M.A., Wittinghofer, A.
Deposit date:2004-01-24
Release date:2004-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The core FH2 domain of diaphanous-related formins is an elongated actin binding protein that inhibits polymerization.
Mol.Cell, 13, 2004
2EFK
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CRYSTAL STRUCTURE OF THE EFC DOMAIN OF CDC42-INTERACTING PROTEIN 4
Descriptor:Cdc42-interacting protein 4
Authors:Shimada, A., Niwa, H., Chen, L., Liu, Z.-J., Wang, B.-C., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-23
Release date:2007-05-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Curved EFC/F-BAR-Domain Dimers Are Joined End to End into a Filament for Membrane Invagination in Endocytosis
Cell(Cambridge,Mass.), 129, 2007
2EFL
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CRYSTAL STRUCTURE OF THE EFC DOMAIN OF FORMIN-BINDING PROTEIN 17
Descriptor:Formin-binding protein 1
Authors:Shimada, A., Niwa, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-23
Release date:2007-05-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Curved EFC/F-BAR-Domain Dimers Are Joined End to End into a Filament for Membrane Invagination in Endocytosis
Cell(Cambridge,Mass.), 129, 2007
5AWR
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CRYSTAL STRUCTURE OF THE SGIP1 MU HOMOLOGY DOMAIN IN THE P4212 SPACE GROUP
Descriptor:SH3-containing GRB2-like protein 3-interacting protein 1, ZINC ION
Authors:Shimada, A., Yamaguchi, A., Kohda, D.
Deposit date:2015-07-08
Release date:2016-07-06
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 mu homology domain.
Sci Rep, 6, 2016
5AWS
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CRYSTAL STRUCTURE OF THE SGIP1 MU HOMOLOGY DOMAIN IN THE P1 SPACE GROUP
Descriptor:SH3-containing GRB2-like protein 3-interacting protein 1, ZINC ION
Authors:Shimada, A., Yamaguchi, A., Kohda, D.
Deposit date:2015-07-08
Release date:2016-07-06
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 mu homology domain.
Sci Rep, 6, 2016
5AWT
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CRYSTAL STRUCTURE OF THE SGIP1 MU HOMOLOGY DOMAIN IN COMPLEX WITH AN EPS15 FRAGMENT CONTAINING TWO DPF MOTIFS (YDPFGGDPFKG)
Descriptor:SH3-containing GRB2-like protein 3-interacting protein 1, Epidermal growth factor receptor substrate 15, ZINC ION
Authors:Shimada, A., Yamaguchi, A., Kohda, D.
Deposit date:2015-07-08
Release date:2016-07-06
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 mu homology domain.
Sci Rep, 6, 2016
5AWU
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CRYSTAL STRUCTURE OF THE SGIP1 MU HOMOLOGY DOMAIN IN COMPLEX WITH AN EPS15 FRAGMENT CONTAINING TWO DPF MOTIFS (YDPFKGSDPFA)
Descriptor:SH3-containing GRB2-like protein 3-interacting protein 1, Epidermal growth factor receptor substrate 15, ZINC ION
Authors:Shimada, A., Yamaguchi, A., Kohda, D.
Deposit date:2015-07-08
Release date:2016-07-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 mu homology domain.
Sci Rep, 6, 2016
5X19
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CO BOUND CYTOCHROME C OXIDASE AT 100 MICRO SEC AFTER PUMP LASER IRRADIATION TO RELEASE CO FROM O2 REDUCTION CENTER
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
5X1B
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CO BOUND CYTOCHROME C OXIDASE AT 20 NSEC AFTER PUMP LASER IRRADIATION TO RELEASE CO FROM O2 REDUCTION CENTER
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
5X1F
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CO BOUND CYTOCHROME C OXIDASE WITHOUT PUMP LASER IRRADIATION AT 278K
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
1IQ0
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THERMUS THERMOPHILUS ARGINYL-TRNA SYNTHETASE
Descriptor:ARGINYL-TRNA SYNTHETASE
Authors:Shimada, A., Nureki, O., Goto, M., Takahashi, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-05-24
Release date:2001-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and mutational studies of the recognition of the arginine tRNA-specific major identity element, A20, by arginyl-tRNA synthetase.
Proc.Natl.Acad.Sci.USA, 98, 2001
2CXY
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CRYSTAL STRUCTURE OF THE HBAF250B AT-RICH INTERACTION DOMAIN (ARID)
Descriptor:BAF250b subunit
Authors:Shimada, A., Niwa, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-01
Release date:2006-10-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the hBAF250b AT-rich interaction domain (ARID)
To be Published
2EB0
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CRYSTAL STRUCTURE OF METHANOCOCCUS JANNASCHII PUTATIVE FAMILY II INORGANIC PYROPHOSPHATASE
Descriptor:Manganese-dependent inorganic pyrophosphatase, MANGANESE (II) ION
Authors:Shimada, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-05
Release date:2007-08-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Methanococcus jannaschii inorganic pyrophosphatase
To be Published
3ABH
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CRYSTAL STRUCTURE OF THE EFC/F-BAR DOMAIN OF HUMAN PACSIN2/SYNDAPIN II (2.0 A)
Descriptor:Protein kinase C and casein kinase substrate in neurons protein 2
Authors:Shimada, A., Shirouzu, M., Hanawa-Suetsugu, K., Terada, T., Umehara, T., Suetsugu, S., Yamamoto, M., Yokoyama, S.
Deposit date:2009-12-11
Release date:2010-04-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II
Febs Lett., 584, 2010
3ACO
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CRYSTAL STRUCTURE OF THE EFC/F-BAR DOMAIN OF HUMAN PACSIN2/SYNDAPIN II (2.7 A)
Descriptor:Protein kinase C and casein kinase substrate in neurons protein 2, CALCIUM ION
Authors:Shimada, A., Shirouzu, M., Hanawa-Suetsugu, K., Terada, T., Umehara, T., Suetsugu, S., Yamamoto, M., Yokoyama, S.
Deposit date:2010-01-07
Release date:2010-04-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Mapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II
Febs Lett., 584, 2010
3ADR
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THE FIRST CRYSTAL STRUCTURE OF AN ARCHAEAL METALLO-BETA-LACTAMASE SUPERFAMILY PROTEIN; ST1585 FROM SULFOLOBUS TOKODAII
Descriptor:Putative uncharacterized protein ST1585, ZINC ION, 1,2-ETHANEDIOL, ...
Authors:Shimada, A., Ishikawa, H., Nakagawa, N., Kuramitsu, S., Masui, R.
Deposit date:2010-01-28
Release date:2010-04-21
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii
Proteins, 78, 2010
3EBL
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CRYSTAL STRUCTURE OF RICE GID1 COMPLEXED WITH GA4
Descriptor:Gibberellin receptor GID1, GIBBERELLIN A4, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Shimada, A., Nakatsu, T., Ueguchi-Tanaka, M., Kato, H., Matsuoka, M.
Deposit date:2008-08-28
Release date:2008-11-25
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for gibberellin recognition by its receptor GID1.
Nature, 456, 2008
3ED1
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CRYSTAL STRUCTURE OF RICE GID1 COMPLEXED WITH GA3
Descriptor:Gibberellin receptor GID1, (4S)-2-METHYL-2,4-PENTANEDIOL, NITRATE ION, ...
Authors:Shimada, A., Nakatsu, T., Ueguchi-Tanaka, M., Kato, H., Matsuoka, M.
Deposit date:2008-09-02
Release date:2008-11-25
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for gibberellin recognition by its receptor GID1.
Nature, 456, 2008
5Z84
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THE STRUCTURE OF AZIDE-BOUND CYTOCHROME C OXIDASE DETERMINED USING THE CRYSTALS EXPOSED TO 20 MM AZIDE SOLUTION FOR 4 DAYS
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
Deposit date:2018-01-31
Release date:2018-08-15
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
5Z85
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THE STRUCTURE OF AZIDE-BOUND CYTOCHROME C OXIDASE DETERMINED USING THE ANOTHER BATCH CRYSTALS EXPOSED TO 20 MM AZIDE SOLUTION FOR 2 DAYS
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
Deposit date:2018-01-31
Release date:2018-08-15
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
5Z86
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AZIDE-BOUND CYTOCHROME C OXIDASE STRUCTURE DETERMINED USING THE CRYSTALS EXPOSED TO 20 MM AZIDE SOLUTION FOR 3 DAYS
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
Deposit date:2018-01-31
Release date:2018-08-15
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
5ZCO
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AZIDE-BOUND CYTOCHROME C OXIDASE STRUCTURE DETERMINED USING THE CRYSTALS EXPOSED TO 2 MM AZIDE SOLUTION FOR 2 DAYS
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
Deposit date:2018-02-19
Release date:2018-08-15
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
5ZCP
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AZIDE-BOUND CYTOCHROME C OXIDASE STRUCTURE DETERMINED USING THE CRYSTALS EXPOSED TO 20 MM AZIDE SOLUTION FOR 2 DAYS
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
Deposit date:2018-02-19
Release date:2018-08-15
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
5ZCQ
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AZIDE-BOUND CYTOCHROME C OXIDASE STRUCTURE DETERMINED USING THE CRYSTALS EXPOSED TO 10 MM AZIDE SOLUTION FOR 2 DAYS
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
Deposit date:2018-02-19
Release date:2018-08-15
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
2EH9
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CRYSTAL STRUCTURE OF THE HBAF250B AT-RICH INTERACTION DOMAIN (ARID)
Descriptor:AT-rich interactive domain-containing protein 1B, ZINC ION, CHLORIDE ION
Authors:Niwa, H., Shimada, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-05
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the HBAF250B at-rich interaction domain (ARID)
To be Published
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