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2AXZ
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BU of 2axz by Molmil
Crystal structure of PrgX/cCF10 complex
Descriptor: LVTLVFV peptide, PrgX, TPPKEVT(MSE) peptide
Authors:Shi, K, Brown, C.K, Gu, Z.Y, Kozlowicz, B.K, Dunny, G.M, Ohlendorf, D.H, Earhart, C.A.
Deposit date:2005-09-06
Release date:2005-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of peptide sex pheromone receptor PrgX and PrgX/pheromone complexes and regulation of conjugation in Enterococcus faecalis.
Proc.Natl.Acad.Sci.Usa, 102, 2005
6NFK
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BU of 6nfk by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G bound to iodide
Descriptor: 1,2-ETHANEDIOL, DNA dC->dU-editing enzyme APOBEC-3B, IODIDE ION
Authors:Shi, K, Orellana, K, Aihara, H.
Deposit date:2018-12-20
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B
Faseb Bioadv, 2, 2020
4F1I
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BU of 4f1i by Molmil
Crystal structure of SeMet TDP2 from Caenorhabditis elegans
Descriptor: 5'-tyrosyl-DNA phosphodiesterase, GLYCEROL
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2012-05-07
Release date:2012-10-31
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2.
Nat.Struct.Mol.Biol., 19, 2012
6NFL
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BU of 6nfl by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G complexed with 2-HP
Descriptor: 1,2-ETHANEDIOL, 1,3-diazinan-2-one, CHLORIDE ION, ...
Authors:Shi, K, Orellana, K, Aihara, H.
Deposit date:2018-12-20
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.731 Å)
Cite:Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B
Faseb Bioadv, 2, 2020
4FVA
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BU of 4fva by Molmil
Crystal structure of truncated Caenorhabditis elegans TDP2
Descriptor: 1,2-ETHANEDIOL, 5'-tyrosyl-DNA phosphodiesterase, MAGNESIUM ION, ...
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2012-06-29
Release date:2012-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2.
Nat.Struct.Mol.Biol., 19, 2012
4GEW
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BU of 4gew by Molmil
Crystal structure of TDP2 from C. elegans
Descriptor: 5'-tyrosyl-DNA phosphodiesterase, GLYCEROL
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2012-08-02
Release date:2012-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2.
Nat.Struct.Mol.Biol., 19, 2012
4FPV
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BU of 4fpv by Molmil
Crystal structure of D. rerio TDP2 complexed with single strand DNA product
Descriptor: DNA (5'-D(P*TP*GP*CP*AP*G)-3'), GLYCEROL, MAGNESIUM ION, ...
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2012-06-22
Release date:2012-10-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2.
Nat.Struct.Mol.Biol., 19, 2012
4F1H
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BU of 4f1h by Molmil
Crystal structure of TDP2 from Danio rerio complexed with a single strand DNA
Descriptor: DNA (5'-D(P*TP*GP*CP*AP*G)-3'), GLYCEROL, MAGNESIUM ION, ...
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2012-05-06
Release date:2012-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.662 Å)
Cite:Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2.
Nat.Struct.Mol.Biol., 19, 2012
5TD5
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BU of 5td5 by Molmil
Crystal Structure of Human APOBEC3B variant complexed with ssDNA
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(P*TP*TP*CP*AP*T)-3'), ...
Authors:Shi, K, Banerjee, S, Kurahashi, K, Aihara, H.
Deposit date:2016-09-16
Release date:2016-12-28
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.718 Å)
Cite:Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B.
Nat. Struct. Mol. Biol., 24, 2017
5CQK
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BU of 5cqk by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Descriptor: DNA dC->dU-editing enzyme APOBEC-3B, GLYCEROL, SODIUM ION, ...
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2015-07-21
Release date:2015-10-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain.
J.Biol.Chem., 290, 2015
5CQH
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BU of 5cqh by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2015-07-21
Release date:2015-10-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain.
J.Biol.Chem., 290, 2015
6XC1
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BU of 6xc1 by Molmil
Crystal structure of bacteriophage T4 spackle and lysozyme in orthorhombic form
Descriptor: 1,2-ETHANEDIOL, ISOPROPYL ALCOHOL, Lysozyme, ...
Authors:Shi, K, Oakland, J.T, Kurniawan, F, Moeller, N.H, Aihara, H.
Deposit date:2020-06-07
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural basis of superinfection exclusion by bacteriophage T4 Spackle.
Commun Biol, 3, 2020
6X6O
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BU of 6x6o by Molmil
Crystal structure of T4 protein Spackle as determined by native SAD phasing
Descriptor: CHLORIDE ION, Protein spackle
Authors:Shi, K, Kurniawan, F, Banerjee, S, Moeller, N.H, Aihara, H.
Deposit date:2020-05-28
Release date:2020-09-16
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Crystal structure of bacteriophage T4 Spackle as determined by native SAD phasing.
Acta Crystallogr D Struct Biol, 76, 2020
6XC0
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BU of 6xc0 by Molmil
Crystal structure of bacteriophage T4 spackle and lysozyme in monoclinic form
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Shi, K, Oakland, J.T, Kurniawan, F, Moeller, N.H, Aihara, H.
Deposit date:2020-06-07
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural basis of superinfection exclusion by bacteriophage T4 Spackle.
Commun Biol, 3, 2020
5CQI
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BU of 5cqi by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Descriptor: DNA dC-dU-editing enzyme APOBEC-3B, GLYCEROL, ZINC ION
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2015-07-21
Release date:2015-10-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain.
J.Biol.Chem., 290, 2015
5CQD
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BU of 5cqd by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Descriptor: DNA dC->dU-editing enzyme APOBEC-3B, GLYCEROL, ZINC ION
Authors:Shi, K, Kurahashi, K, Aihara, H.
Deposit date:2015-07-21
Release date:2015-10-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain.
J.Biol.Chem., 290, 2015
6NFM
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BU of 6nfm by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G
Descriptor: CHLORIDE ION, DNA dC->dU-editing enzyme APOBEC-3B
Authors:Shi, K, Aihara, H.
Deposit date:2018-12-20
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B
Faseb Bioadv, 2, 2020
3EA6
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BU of 3ea6 by Molmil
Atomic resolution of crystal structure of SEK
Descriptor: IODIDE ION, Staphylococcal enterotoxin K, ZINC ION
Authors:Shi, K, Huseby, M, Schlievert, P.M, Ohlendorf, D.H, Earhart, C.A.
Deposit date:2008-08-24
Release date:2009-06-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Structural Studies of an Emerging Pyrogenic Superantigen, SEK
To be Published
438D
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BU of 438d by Molmil
STRUCTURE OF AN RNA DUPLEX R(GGGCGCUCC)2 WITH NON-ADJACENT G.U BASE PAIRS
Descriptor: RNA (5'-R(*GP*GP*GP*CP*GP*CP*UP*CP*C)-3')
Authors:Shi, K, Wahl, M.C, Sundaralingam, M.
Deposit date:1998-12-28
Release date:1999-05-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of an RNA duplex r(G GCGC CC)2 with non-adjacent G*U base pairs.
Nucleic Acids Res., 27, 1999
6DT1
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BU of 6dt1 by Molmil
Crystal structure of the ligase from bacteriophage T4 complexed with DNA intermediate
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Shi, K, Aihara, H.
Deposit date:2018-06-14
Release date:2018-09-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:T4 DNA ligase structure reveals a prototypical ATP-dependent ligase with a unique mode of sliding clamp interaction.
Nucleic Acids Res., 46, 2018
6DRT
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BU of 6drt by Molmil
Crystal structure of the processivity clamp GP45 complexed with recognition peptide of ligase from bacteriophage T4
Descriptor: 1,2-ETHANEDIOL, DNA polymerase clamp, GP45 recognition loop
Authors:Shi, K, Aihara, H.
Deposit date:2018-06-13
Release date:2018-09-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.117 Å)
Cite:T4 DNA ligase structure reveals a prototypical ATP-dependent ligase with a unique mode of sliding clamp interaction.
Nucleic Acids Res., 46, 2018
5WFY
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BU of 5wfy by Molmil
Crystal structure of DNA-binding domain of the bacteriophage T4 ligase
Descriptor: DNA ligase, GLYCEROL
Authors:Shi, K, Aihara, H.
Deposit date:2017-07-13
Release date:2018-09-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:T4 DNA ligase structure reveals a prototypical ATP-dependent ligase with a unique mode of sliding clamp interaction.
Nucleic Acids Res., 46, 2018
6CWJ
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BU of 6cwj by Molmil
Crystal structures of cyanuric acid hydrolase from Moorella thermoacetica complexed with 1,3-Acetone Dicarboxylic Acid
Descriptor: 1,3-PROPANDIOL, 3-oxopentanedioic acid, ACETATE ION, ...
Authors:Shi, K, Aihara, H.
Deposit date:2018-03-30
Release date:2019-06-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.253 Å)
Cite:Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis.
Plos One, 14, 2019
6DHJ
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BU of 6dhj by Molmil
Crystal structures of cyanuric acid hydrolase from Moorella thermoacetica
Descriptor: CITRIC ACID, Cyanuric acid amidohydrolase
Authors:Shi, K, Aihara, H.
Deposit date:2018-05-20
Release date:2019-06-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis.
Plos One, 14, 2019
6BUM
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BU of 6bum by Molmil
Crystal structures of cyanuric acid hydrolase from Moorella thermoacetica
Descriptor: 1,3-PROPANDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Shi, K, Cho, S, Seffernick, J.L, Bera, A, Wackett, L.P, Aihara, H.
Deposit date:2017-12-11
Release date:2019-06-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis.
Plos One, 14, 2019

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