Author results

1LLS
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CRYSTAL STRUCTURE OF UNLIGANDED MALTOSE BINDING PROTEIN WITH XENON
Descriptor:Maltose-binding periplasmic protein, XENON
Authors:Rubin, S.M., Lee, S.-Y., Ruiz, E.J., Pines, A., Wemmer, D.E.
Deposit date:2002-04-30
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:DETECTION AND CHARACTERIZATION OF XENON-BINDING SITES IN PROTEINS BY 129XE NMR SPECTROSCOPY
J.MOL.BIOL., 322, 2002
1PA4
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SOLUTION STRUCTURE OF A PUTATIVE RIBOSOME-BINDING FACTOR FROM MYCOPLASMA PNEUMONIAE (MPN156)
Descriptor:Probable ribosome-binding factor A
Authors:Rubin, S.M., Pelton, J.G., Yokota, H., Kim, R., Wemmer, D.E., Berkeley Structural Genomics Center (BSGC)
Deposit date:2003-05-13
Release date:2004-03-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a putative ribosome binding protein from Mycoplasma pneumoniae and comparison to a distant homolog.
J.STRUCT.FUNCT.GENOM., 4, 2003
2AZE
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STRUCTURE OF THE RB C-TERMINAL DOMAIN BOUND TO AN E2F1-DP1 HETERODIMER
Descriptor:Transcription factor Dp-1, Transcription factor E2F1, Retinoblastoma-associated protein
Authors:Rubin, S.M., Gall, A.L., Zheng, N., Pavletich, N.P.
Deposit date:2005-09-10
Release date:2006-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure of the Rb C-terminal domain bound to E2F1-DP1: a mechanism for phosphorylation-induced E2F release.
Cell(Cambridge,Mass.), 123, 2005
5FD3
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STRUCTURE OF LIN54 TESMIN DOMAIN BOUND TO DNA
Descriptor:Protein lin-54 homolog, DNA (5'-D(*GP*AP*GP*TP*TP*TP*GP*AP*AP*AP*CP*T)-3'), DNA (5'-D(*CP*AP*GP*TP*TP*TP*CP*AP*AP*AP*CP*TP*C)-3'), ...
Authors:Marceau, A.H., Felthousen, J.G., Goetsch, P.D., Lee, H., Tripathi, S.M., Strome, S., Litovchick, L., Rubin, S.M.
Deposit date:2015-12-15
Release date:2016-08-03
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Structural basis for LIN54 recognition of CHR elements in cell cycle-regulated promoters.
Nat Commun, 7, 2016
5TUU
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CRYSTAL STRUCTURE OF THE E2F4-DP1 COILED COIL AND MARKED-BOX DOMAINS
Descriptor:Transcription factor DP1, Transcription factor E2F4, GLYCEROL
Authors:Liban, T.J., Rubin, S.M., Tripathi, S.M.
Deposit date:2016-11-07
Release date:2017-05-03
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.251 Å)
Cite:Conservation and divergence of C-terminal domain structure in the retinoblastoma protein family.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5TUV
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CRYSTAL STRUCTURE OF THE E2F5-DP1-P107 TERNARY COMPLEX
Descriptor:Transcription factor DP1, Transcription factor E2F5, Retinoblastoma-like protein 1
Authors:Liban, T.J., Tripathi, S.M., Rubin, S.M.
Deposit date:2016-11-07
Release date:2017-05-03
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Conservation and divergence of C-terminal domain structure in the retinoblastoma protein family.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5UQ1
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CRYSTAL STRUCTURE OF HUMAN CDK2-SPY1 COMPLEX
Descriptor:Cyclin-dependent kinase 2, Speedy protein A
Authors:McGrath, D.A., Tripathi, S.M., Rubin, S.M.
Deposit date:2017-02-06
Release date:2017-07-05
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (3.201 Å)
Cite:Structural basis of divergent cyclin-dependent kinase activation by Spy1/RINGO proteins.
EMBO J., 36, 2017
5UQ2
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CRYSTAL STRUCTURE OF HUMAN CDK2-SPY1 COMPLEX
Descriptor:Cyclin-dependent kinase 2, Speedy protein A
Authors:McGrath, D.A., Tripathi, S.M., Rubin, S.M.
Deposit date:2017-02-06
Release date:2017-07-05
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of divergent cyclin-dependent kinase activation by Spy1/RINGO proteins.
EMBO J., 36, 2017
5UQ3
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CRYSTAL STRUCTURE OF HUMAN CDK2-SPY1-P27 TERNARY COMPLEX
Descriptor:Cyclin-dependent kinase 2, Speedy protein A, Cyclin-dependent kinase inhibitor 1B
Authors:McGrath, D.A., Tripathi, S.M., Rubin, S.M.
Deposit date:2017-02-06
Release date:2017-07-05
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis of divergent cyclin-dependent kinase activation by Spy1/RINGO proteins.
EMBO J., 36, 2017
6C48
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CRYSTAL STRUCTURE OF B-MYB-LIN9-LIN52 COMPLEX
Descriptor:Protein lin-9 homolog, Myb-related protein B, Protein lin-52 homolog, ...
Authors:Guiley, K.Z., Tripathi, S.M., Rubin, S.M.
Deposit date:2018-01-11
Release date:2018-09-19
Last modified:2018-10-17
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structural mechanism of Myb-MuvB assembly.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1ZDM
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CRYSTAL STRUCTURE OF ACTIVATED CHEY BOUND TO XE
Descriptor:Chemotaxis protein cheY, MANGANESE (II) ION, XENON
Authors:Lowery, T.J., Doucleff, M., Ruiz, E.J., Rubin, S.M., Pines, A., Wemmer, D.E.
Deposit date:2005-04-14
Release date:2005-04-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Distinguishing multiple chemotaxis Y protein conformations with laser-polarized 129Xe NMR.
Protein Sci., 14, 2005
3N5U
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CRYSTAL STRUCTURE OF AN RB C-TERMINAL PEPTIDE BOUND TO THE CATALYTIC SUBUNIT OF PP1
Descriptor:Serine/threonine-protein phosphatase PP1-alpha catalytic subunit, Retinoblastoma-associated protein, MANGANESE (II) ION, ...
Authors:Hirschi, A.M., Cecchini, M., Steinhardt, R.C., Dick, F.A., Rubin, S.M.
Deposit date:2010-05-25
Release date:2010-08-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:An overlapping kinase and phosphatase docking site regulates activity of the retinoblastoma protein.
Nat.Struct.Mol.Biol., 17, 2010
3POM
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CRYSTAL STRUCTURE OF THE UNLIGANDED RETINOBLASTOMA PROTEIN POCKET DOMAIN
Descriptor:Retinoblastoma-associated protein
Authors:Balog, E.R.M., Burke, J.R., Rubin, S.M.
Deposit date:2010-11-23
Release date:2011-04-27
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the unliganded retinoblastoma protein pocket domain.
Proteins, 79, 2011
3QY2
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CRYSTAL STRUCTURE OF THE P93A MONOMER MUTANT OF S. CEREVISIAE CKS1
Descriptor:Cyclin-dependent kinases regulatory subunit, CITRATE ANION
Authors:Balog, E.R.M., Saetern, O.C., Finch, W., Hoeft, C.O., Thai, V., Harvey, S.L., Kellogg, D.K., Rubin, S.M.
Deposit date:2011-03-02
Release date:2011-06-29
Last modified:2011-08-10
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:The structure of a monomeric mutant cks protein reveals multiple functions for a conserved hinge-region proline.
J.Mol.Biol., 411, 2011
4ELJ
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CRYSTAL STRUCTURE OF THE INACTIVE RETINOBLASTOMA PROTEIN PHOSPHORYLATED AT T373
Descriptor:Retinoblastoma-associated protein
Authors:Burke, J.R., Rubin, S.M.
Deposit date:2012-04-10
Release date:2012-05-23
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of inactive retinoblastoma protein reveal multiple mechanisms for cell cycle control.
Genes Dev., 26, 2012
4ELL
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STRUCTURE OF THE INACTIVE RETINOBLASTOMA PROTEIN POCKET DOMAIN
Descriptor:Retinoblastoma-associated protein
Authors:Burke, J.R., Rubin, S.M.
Deposit date:2012-04-10
Release date:2012-05-23
Last modified:2012-08-15
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structures of inactive retinoblastoma protein reveal multiple mechanisms for cell cycle control.
Genes Dev., 26, 2012
4LPA
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CRYSTAL STRUCTURE OF A CDC6 PHOSPHOPEPTIDE IN COMPLEX WITH CKS1
Descriptor:Cyclin-dependent kinases regulatory subunit
Authors:McGrath, D.A., Balog, E.R.M., Koivomagi, M., Lucena, R., Mai, M.V., Hirschi, A., Kellogg, D.R., Loog, M., Rubin, S.M.
Deposit date:2013-07-15
Release date:2013-11-06
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Cks confers specificity to phosphorylation-dependent CDK signaling pathways.
Nat.Struct.Mol.Biol., 20, 2013
4YOO
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P107 POCKET DOMAIN IN COMPLEX WITH LIN52 P29A PEPTIDE
Descriptor:Retinoblastoma-like protein 1,Retinoblastoma-like protein 1, LIN52 peptide, SULFATE ION
Authors:Guiley, K.Z., Liban, T.J., Felthousen, J.G., Ramanan, P., Tripathi, S., Litovchick, L., Rubin, S.M.
Deposit date:2015-03-12
Release date:2015-05-13
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural mechanisms of DREAM complex assembly and regulation.
Genes Dev., 29, 2015
4YOS
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P107 POCKET DOMAIN COMPLEXED WITH LIN52 PEPTIDE
Descriptor:Retinoblastoma-like protein 1,Retinoblastoma-like protein 1, Protein lin-52 homolog, SULFATE ION, ...
Authors:Guiley, K.Z., Liban, T.J., Felthousen, J.G., Ramanan, P., Tripathi, S., Litovchick, L., Rubin, S.M.
Deposit date:2015-03-12
Release date:2015-05-27
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural mechanisms of DREAM complex assembly and regulation.
Genes Dev., 29, 2015
4YOZ
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P107 POCKET DOMAIN IN COMPLEX WITH HPV E7 PEPTIDE
Descriptor:Retinoblastoma-like protein 1,Retinoblastoma-like protein 1, HPV E7 peptide, SULFATE ION
Authors:Liban, T.J., Guiley, K.Z., Felthousen, J.G., Ramanan, P., Litovchick, L., Rubin, S.M.
Deposit date:2015-03-12
Release date:2015-06-24
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.245 Å)
Cite:Structural mechanisms of DREAM complex assembly and regulation.
Genes Dev., 29, 2015
5C9H
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STRUCTURAL BASIS OF TEMPLATE BOUNDARY DEFINITION IN TETRAHYMENA TELOMERASE
Descriptor:Telomerase reverse transcriptase, RNA (5'-R(P*AP*GP*AP*AP*CP*UP*GP*UP*CP*A)-3'), RNA (5'-R(P*UP*CP*AP*UP*UP*CP*AP*GP*UP*UP*CP*U)-3'), ...
Authors:Jansson, L.I., Akiyama, B.M., Ooms, A., Lu, C., Rubin, S.M., Stone, M.D.
Deposit date:2015-06-26
Release date:2015-10-14
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of template-boundary definition in Tetrahymena telomerase.
Nat.Struct.Mol.Biol., 22, 2015
4BJ1
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CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE RIF2
Descriptor:PROTEIN RIF2, CHLORIDE ION
Authors:Shi, T., Bunker, R.D., Gut, H., Scrima, A., Thoma, N.H.
Deposit date:2013-04-15
Release date:2013-06-19
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Rif1 and Rif2 Shape Telomere Funcation and Architecture Through Multivalent RAP1 Interactions
Cell(Cambridge,Mass.), 153, 2013
4BJ5
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CRYSTAL STRUCTURE OF RIF2 IN COMPLEX WITH THE C-TERMINAL DOMAIN OF RAP1 (RAP1-RCT)
Descriptor:PROTEIN RIF2, DNA-BINDING PROTEIN RAP1, SULFATE ION
Authors:Shi, T., Bunker, R.D., Gut, H., Scrima, A., Thoma, N.H.
Deposit date:2013-04-16
Release date:2013-06-19
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Rif1 and Rif2 Shape Telomere Funcation and Architecture Through Multivalent RAP1 Interactions
Cell(Cambridge,Mass.), 153, 2013
4BJ6
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CRYSTAL STRUCTURE RIF2 IN COMPLEX WITH THE C-TERMINAL DOMAIN OF RAP1 (RAP1-RCT)
Descriptor:RAP1-INTERACTING FACTOR 2, DNA-BINDING PROTEIN RAP1, SULFATE ION
Authors:Shi, T., Bunker, R.D., Gut, H., Scrima, A., Thoma, N.H.
Deposit date:2013-04-16
Release date:2013-06-19
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (3.26 Å)
Cite:Rif1 and Rif2 Shape Telomere Funcation and Architecture Through Multivalent RAP1 Interactions
Cell(Cambridge,Mass.), 153, 2013
4BJS
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CRYSTAL STRUCTURE OF THE RIF1 C-TERMINAL DOMAIN (RIF1-CTD) FROM SACCHAROMYCES CEREVISIAE
Descriptor:TELOMERE LENGTH REGULATOR PROTEIN RIF1
Authors:Bunker, R.D., Shi, T., Gut, H., Scrima, A., Thoma, N.H.
Deposit date:2013-04-19
Release date:2013-06-19
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Rif1 and Rif2 Shape Telomere Funcation and Architecture Through Multivalent RAP1 Interactions
Cell(Cambridge,Mass.), 153, 2013
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