Author results

5ZOO
  • Download 5zoo
  • View 5zoo
Molmil generated image of 5zoo
CRYSTAL STRUCTURE OF HISTONE DEACETYLASE 4 (HDAC4) IN COMPLEX WITH A SMRT COREPRESSOR SP1 FRAGMENT
Descriptor:Histone deacetylase 4, SMRT corepressor SP1 fragment, POTASSIUM ION, ...
Authors:Park, S.Y., Hwang, H.J., Kim, J.S.
Deposit date:2018-04-13
Release date:2018-11-14
Last modified:2018-12-26
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis of the specific interaction of SMRT corepressor with histone deacetylase 4
Nucleic Acids Res., 46, 2018
1U0S
  • Download 1u0s
  • View 1u0s
Molmil generated image of 1u0s
CHEMOTAXIS KINASE CHEA P2 DOMAIN IN COMPLEX WITH RESPONSE REGULATOR CHEY FROM THE THERMOPHILE THERMOTOGA MARITIMA
Descriptor:Chemotaxis protein cheY, Chemotaxis protein cheA
Authors:Park, S.Y., Beel, B.D., Simon, M.I., Bilwes, A.M., Crane, B.R.
Deposit date:2004-07-14
Release date:2004-08-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:In different organisms, the mode of interaction between two signaling proteins is not necessarily conserved
Proc.Natl.Acad.Sci.USA, 101, 2004
1XKO
  • Download 1xko
  • View 1xko
Molmil generated image of 1xko
STRUCTURE OF THERMOTOGA MARITIMA CHEX
Descriptor:CHEMOTAXIS protein cheX
Authors:Park, S.Y., Chao, X., Gonzalez-Bonet, G., Beel, B.D., Bilwes, A.M., Crane, B.R.
Deposit date:2004-09-29
Release date:2004-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Structure and Function of an Unusual Family of Protein Phosphatases; The Bacterial Chemotaxis Proteins CheC and CheX.
Mol.Cell, 16, 2004
1XKR
  • Download 1xkr
  • View 1xkr
Molmil generated image of 1xkr
X-RAY STRUCTURE OF THERMOTOGA MARITIMA CHEC
Descriptor:chemotaxis protein CheC
Authors:Park, S.Y., Chao, X., Gonzalez-Bonet, G., Beel, B.D., Bilwes, A.M., Crane, B.R.
Deposit date:2004-09-29
Release date:2004-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure and Function of an Unusual Family of Protein Phosphatases; The Bacterial Chemotaxis Proteins CheC and CheX
Mol.Cell, 16, 2004
2CH4
  • Download 2ch4
  • View 2ch4
Molmil generated image of 2ch4
COMPLEX BETWEEN BACTERIAL CHEMOTAXIS HISTIDINE KINASE CHEA DOMAINS P4 AND P5 AND RECEPTOR-ADAPTOR PROTEIN CHEW
Descriptor:CHEMOTAXIS PROTEIN CHEA, CHEMOTAXIS PROTEIN CHEW, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Park, S.Y., Bilwes, A.M., Crane, B.R.
Deposit date:2006-03-10
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Reconstruction of the Chemotaxis Receptor-Kinase Assembly
Nat.Struct.Mol.Biol., 13, 2006
2CH7
  • Download 2ch7
  • View 2ch7
Molmil generated image of 2ch7
CRYSTAL STRUCTURE OF THE CYTOPLASMIC DOMAIN OF A BACTERIAL CHEMORECEPTOR FROM THERMOTOGA MARITIMA
Descriptor:METHYL-ACCEPTING CHEMOTAXIS PROTEIN, LEAD (II) ION
Authors:Park, S.Y., Bilwes, A.M., Crane, B.R.
Deposit date:2006-03-13
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Reconstruction of the Chemotaxis Receptor-Kinase Assembly
Nat.Struct.Mol.Biol., 13, 2006
3QYB
  • Download 3qyb
  • View 3qyb
Molmil generated image of 3qyb
X-RAY CRYSTAL STRUCTURE OF HUMAN TBC1D4 (AS160) RABGAP DOMAIN
Descriptor:TBC1 domain family member 4
Authors:Park, S.Y., Shoelson, S.E.
Deposit date:2011-03-03
Release date:2011-03-23
Last modified:2012-08-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structures of human TBC1D1 and TBC1D4 (AS160) RabGTPase-activating protein (RabGAP) domains reveal critical elements for GLUT4 translocation.
J.Biol.Chem., 286, 2011
3QYE
  • Download 3qye
  • View 3qye
Molmil generated image of 3qye
CRYSTAL STRUCTURE OF HUMAN TBC1D1 RABGAP DOMAIN
Descriptor:TBC1 domain family member 1
Authors:Park, S.Y., Shoelson, S.E.
Deposit date:2011-03-03
Release date:2011-03-23
Last modified:2012-08-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of human TBC1D1 and TBC1D4 (AS160) RabGTPase-activating protein (RabGAP) domains reveal critical elements for GLUT4 translocation.
J.Biol.Chem., 286, 2011
3T8Y
  • Download 3t8y
  • View 3t8y
Molmil generated image of 3t8y
CRYSTAL STRUCTURE OF THE RESPONSE REGULATOR DOMAIN OF THERMOTOGA MARITIMA CHEB
Descriptor:Chemotaxis response regulator protein-glutamate methylesterase, LEAD (II) ION
Authors:Park, S.Y., Crane, B.R.
Deposit date:2011-08-02
Release date:2011-09-14
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insight into the low affinity between Thermotoga maritima CheA and CheB compared to their Escherichia coli/Salmonella typhimurium counterparts
Int.J.Biol.Macromol., 49, 2011
3UFB
  • Download 3ufb
  • View 3ufb
Molmil generated image of 3ufb
CRYSTAL STRUCTURE OF A MODIFICATION SUBUNIT OF A PUTATIVE TYPE I RESTRICTION ENZYME FROM VIBRIO VULNIFICUS YJ016
Descriptor:Type I restriction-modification system methyltransferase subunit
Authors:Park, S.Y., Lee, H.J., Sun, J., Nishi, K., Song, J.M., Kim, J.S.
Deposit date:2011-11-01
Release date:2012-11-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of a modification subunit of a putative type I restriction enzyme from Vibrio vulnificus YJ016
Acta Crystallogr.,Sect.D, 68, 2012
5I0Z
  • Download 5i0z
  • View 5i0z
Molmil generated image of 5i0z
CRYSTAL STRUCTURE OF THE SINGLE DOMAIN CATALYTIC ANTIBODY 3D8-VH
Descriptor:catalytic DNA antibody
Authors:Park, S.Y., Kim, J.S.
Deposit date:2016-02-04
Release date:2016-02-24
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the single domain catalytic antibody 3D8-VH
To Be Published
5ZOP
  • Download 5zop
  • View 5zop
Molmil generated image of 5zop
CRYSTAL STRUCTURE OF HISTONE DEACETYLASE 4 (HDAC4) IN COMPLEX WITH A SMRT COREPRESSOR SP2 FRAGMENT
Descriptor:Histone deacetylase 4, SMRT corepressor SP2 fragment, POTASSIUM ION, ...
Authors:Park, S.Y., Hwang, H.J., Kim, J.S.
Deposit date:2018-04-13
Release date:2018-10-10
Method:X-RAY DIFFRACTION (2.698 Å)
Cite:Crystal structure of histone deacetylase 4 (HDAC4) in complex with a SMRT corepressor SP1 fragment
To be published
5FGM
  • Download 5fgm
  • View 5fgm
Molmil generated image of 5fgm
STREPTOMYCES COELICOLOR SIGR REGION 4
Descriptor:ECF RNA polymerase sigma factor SigR
Authors:Park, S.Y.
Deposit date:2015-12-21
Release date:2016-03-02
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:In Streptomyces coelicolor SigR, methionine at the -35 element interacting region 4 confers the -31'-adenine base selectivity
Biochem.Biophys.Res.Commun., 470, 2016
5GV5
  • Download 5gv5
  • View 5gv5
Molmil generated image of 5gv5
CRYSTAL STRUCTURE OF CANDIDA ANTARCTICA LIPASE B WITH ACTIVE SER105 MODIFIED WITH A PHOSPHONATE INHIBITOR
Descriptor:Lipase B, [(1S)-2-(methoxycarbonylamino)-1-phenyl-ethoxy]-propyl-phosphinic acid, N-ACETYL-D-GLUCOSAMINE
Authors:Park, S.Y., Lee, H.
Deposit date:2016-09-02
Release date:2017-09-13
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Structural and Experimental Evidences for its Enantiomeric Recognition Towards a Bulky sec-Alcohol
To Be Published
5I0B
  • Download 5i0b
  • View 5i0b
Molmil generated image of 5i0b
STRUCTURE OF PAK4
Descriptor:Serine/threonine-protein kinase PAK 4, 6-bromo-2-[1-methyl-3-(propan-2-yl)-1H-pyrazol-4-yl]-1H-imidazo[4,5-b]pyridine
Authors:Park, S.Y.
Deposit date:2016-02-03
Release date:2016-12-14
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:The discovery and the structural basis of an imidazo[4,5-b]pyridine-based p21-activated kinase 4 inhibitor
Bioorg. Med. Chem. Lett., 26, 2016
5ZC1
  • Download 5zc1
  • View 5zc1
Molmil generated image of 5zc1
X-RAY DIFFRACTION ANALYSIS OF THE CSSTEFIN-1
Descriptor:Cystatin-1
Authors:Jang, S.B., Park, S.Y.
Deposit date:2018-02-14
Release date:2018-12-26
Method:X-RAY DIFFRACTION (2.302708 Å)
Cite:Structural basis of the cystein protease inhibitor Clonorchis sinensis Stefin-1.
Biochem. Biophys. Res. Commun., 498, 2018
3H1T
  • Download 3h1t
  • View 3h1t
Molmil generated image of 3h1t
THE FRAGMENT STRUCTURE OF A PUTATIVE HSDR SUBUNIT OF A TYPE I RESTRICTION ENZYME FROM VIBRIO VULNIFICUS YJ016
Descriptor:Type I site-specific restriction-modification system, R (Restriction) subunit
Authors:Park, S.Y., Lee, H.J., Kim, J.S.
Deposit date:2009-04-13
Release date:2009-10-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016: implications for DNA restriction and translocation activity
Nucleic Acids Res., 2009
3SFT
  • Download 3sft
  • View 3sft
Molmil generated image of 3sft
CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA CHEB METHYLESTERASE CATALYTIC DOMAIN
Descriptor:Chemotaxis response regulator protein-glutamate methylesterase
Authors:Park, S.Y., Crane, B.R.
Deposit date:2011-06-14
Release date:2011-07-20
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:An insight into the interaction mode between CheB and chemoreceptor from two crystal structures of CheB methylesterase catalytic domain
Biochem.Biophys.Res.Commun., 411, 2011
4OKV
  • Download 4okv
  • View 4okv
Molmil generated image of 4okv
CRYSTAL STRUCTURE OF ANOPHELINE ANTI-PLATELET PROTEIN WITH FAB ANTIBODY
Descriptor:heavy chain of 8H7 mAb, light chain of 8H7 mAb, Anti-platelet aggregation protein
Authors:Park, S.Y., Sugiyama, K.
Deposit date:2014-01-23
Release date:2014-04-30
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:The crystal structure of anopheles anti-platelet protein, a powerful anti-coagulant, in complex with an antibody
To be Published
5EEP
  • Download 5eep
  • View 5eep
Molmil generated image of 5eep
CRYSTAL STRUCTURE OF E. COLI CSDE
Descriptor:CsdA-binding activator
Authors:Park, S.Y.
Deposit date:2015-10-23
Release date:2016-06-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The crystal structure of Escherichia coli CsdE
Int.J.Biol.Macromol., 87, 2016
5H2B
  • Download 5h2b
  • View 5h2b
Molmil generated image of 5h2b
STRUCTURE OF A NOVEL ANTIBODY G196
Descriptor:G196 antibody Heavy chain, G196 antibody Light chain
Authors:Park, S.Y., Sugiyama, K.
Deposit date:2016-10-14
Release date:2017-03-22
Last modified:2017-04-19
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:G196 epitope tag system: a novel monoclonal antibody, G196, recognizes the small, soluble peptide DLVPR with high affinity.
Sci Rep, 7, 2017
3OWO
  • Download 3owo
  • View 3owo
Molmil generated image of 3owo
STRUCTURES OF IRON-DEPENDENT ALCOHOL DEHYDROGENASE 2 FROM ZYMOMONAS MOBILIS ZM4 WITH AND WITHOUT NAD COFACTOR
Descriptor:Alcohol dehydrogenase 2, FE (II) ION
Authors:Moon, J.H., Lee, H.J., Song, J.M., Park, S.Y., Park, M.Y., Park, H.M., Sun, J., Park, J.H., Kim, J.S.
Deposit date:2010-09-20
Release date:2011-02-16
Last modified:2014-03-26
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structures of iron-dependent alcohol dehydrogenase 2 from Zymomonas mobilis ZM4 with and without NAD+ cofactor
J.Mol.Biol., 407, 2011
3OX4
  • Download 3ox4
  • View 3ox4
Molmil generated image of 3ox4
STRUCTURES OF IRON-DEPENDENT ALCOHOL DEHYDROGENASE 2 FROM ZYMOMONAS MOBILIS ZM4 COMPLEXED WITH NAD COFACTOR
Descriptor:Alcohol dehydrogenase 2, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, FE (II) ION
Authors:Moon, J.H., Lee, H.J., Song, J.M., Park, S.Y., Park, M.Y., Park, H.M., Sun, J., Park, J.H., Kim, J.S.
Deposit date:2010-09-21
Release date:2011-02-16
Last modified:2014-03-26
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of iron-dependent alcohol dehydrogenase 2 from Zymomonas mobilis ZM4 with and without NAD+ cofactor
J.Mol.Biol., 407, 2011
1JFB
  • Download 1jfb
  • View 1jfb
Molmil generated image of 1jfb
X-RAY STRUCTURE OF NITRIC OXIDE REDUCTASE (CYTOCHROME P450NOR) IN THE FERRIC RESTING STATE AT ATOMIC RESOLUTION
Descriptor:nitric-oxide reductase cytochrome P450 55A1, PROTOPORPHYRIN IX CONTAINING FE, GLYCEROL
Authors:Shimizu, H., Adachi, S., Park, S.Y., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-06-20
Release date:2001-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:X-ray structure of nitric oxide reductase (cytochrome P450nor) at atomic resolution.
Acta Crystallogr.,Sect.D, 58, 2002
1JFC
  • Download 1jfc
  • View 1jfc
Molmil generated image of 1jfc
X-RAY STRUCTURE OF NITRIC OXIDE REDUCTASE (CYTOCHROME P450NOR) IN THE FERROUS CO STATE AT ATOMIC RESOLUTION
Descriptor:nitric-oxide reductase Cytochrome P450 55A1, PROTOPORPHYRIN IX CONTAINING FE, CARBON MONOXIDE, ...
Authors:Shimizu, H., Adachi, S., Park, S.Y., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-06-20
Release date:2001-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:X-ray structure of nitric oxide reductase (cytochrome P450nor) at atomic resolution.
Acta Crystallogr.,Sect.D, 58, 2002