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1V8J
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THE CRYSTAL STRUCTURE OF THE MINIMAL FUNCTIONAL DOMAIN OF THE MICROTUBULE DESTABILIZER KIF2C COMPLEXED WITH MG-ADP
分子名称:Kinesin-like protein KIF2C, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE
著者Ogawa, T., Nitta, R., Okada, Y., Hirokawa, N.
登録日2004-01-09
公開日2004-03-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.24 Å)
主引用文献A common mechanism for microtubule destabilizers-M type kinesins stabilize curling of the protofilament using the class-specific neck and loops.
Cell(Cambridge,Mass.), 116, 2004
1V8K
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THE CRYSTAL STRUCTURE OF THE MINIMAL FUNCTIONAL DOMAIN OF THE MICROTUBULE DESTABILIZER KIF2C COMPLEXED WITH MG-AMPPNP
分子名称:Kinesin-like protein KIF2C, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Ogawa, T., Nitta, R., Okada, Y., Hirokawa, N.
登録日2004-01-09
公開日2004-03-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献A common mechanism for microtubule destabilizers-M type kinesins stabilize curling of the protofilament using the class-specific neck and loops.
Cell(Cambridge,Mass.), 116, 2004
5XJA
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THE CRYSTAL STRUCTURE OF THE MINIMAL CORE DOMAIN OF THE MICROTUBULE DEPOLYMERIZER KIF2C COMPLEXED WITH ADP-MG-ALFX
分子名称:Kinesin-like protein KIF2C, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE, ...
著者Ogawa, T., Jiang, X., Hirokawa, N.
登録日2017-04-30
公開日2017-09-13
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (3.43 Å)
主引用文献Mechanism of Catalytic Microtubule Depolymerization via KIF2-Tubulin Transitional Conformation
Cell Rep, 20, 2017
5XJB
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THE CRYSTAL STRUCTURE OF THE MINIMAL CORE DOMAIN OF THE MICROTUBULE DEPOLYMERIZER KIF2C COMPLEXED WITH ADP-MG-BEFX
分子名称:Kinesin-like protein KIF2C, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
著者Ogawa, T., Jiang, X., Hirokawa, N.
登録日2017-04-30
公開日2017-09-13
最終更新日2017-09-27
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Mechanism of Catalytic Microtubule Depolymerization via KIF2-Tubulin Transitional Conformation
Cell Rep, 20, 2017
3VQJ
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CRYSTAL STRUCTUTRE OF THIOBACILLUS THIOPARUS THI115 CARBONYL SULFIDE HYDROLASE
分子名称:Carbonyl sulfide hydrolase, ZINC ION, SODIUM ION
著者Katayama, Y., Noguchi, K., Ogawa, T., Ohtaki, A., Odaka, M., Yohda, M.
登録日2012-03-24
公開日2013-02-27
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Carbonyl Sulfide Hydrolase from Thiobacillus thioparus Strain THI115 Is One of the beta-Carbonic Anhydrase Family Enzymes
J.Am.Chem.Soc., 135, 2013
3VRK
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CRYSTAL STRUCTUTRE OF THIOBACILLUS THIOPARUS THI115 CARBONYL SULFIDE HYDROLASE / THIOCYANATE COMPLEX
分子名称:Carbonyl sulfide hydrolase, ZINC ION, SODIUM ION, ...
著者Katayama, Y., Noguchi, K., Ogawa, T., Ohtaki, A., Odaka, M., Yohda, M.
登録日2012-04-11
公開日2013-02-27
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Carbonyl Sulfide Hydrolase from Thiobacillus thioparus Strain THI115 Is One of the beta-Carbonic Anhydrase Family Enzymes
J.Am.Chem.Soc., 135, 2013
5ZNM
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COLICIN D CENTRAL DOMAIN AND C-TERMINAL TRNASE DOMAIN
分子名称:Colicin-D, SULFATE ION, GLYCEROL
著者Chang, J.W., Sato, Y., Ogawa, T., Arakawa, T., Fukai, S., Fushinobu, S., Masaki, H.
登録日2018-04-10
公開日2018-08-29
最終更新日2018-10-31
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of the central and the C-terminal RNase domains of colicin D implicated its translocation pathway through inner membrane of target cell
J. Biochem., 164, 2018
1C1F
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LIGAND-FREE CONGERIN I
分子名称:PROTEIN (CONGERIN I)
著者Shirai, T., Mitsuyama, C., Niwa, Y., Matsui, Y., Hotta, H., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
登録日1999-03-03
公開日1999-10-08
最終更新日2016-04-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
1C1L
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LACTOSE-LIGANDED CONGERIN I
分子名称:PROTEIN (CONGERIN I), BETA-D-GALACTOSE, BETA-D-GLUCOSE
著者Shirai, T., Mitsuyama, C., Niwa, Y., Matsui, Y., Hotta, H., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
登録日1999-03-03
公開日1999-10-08
最終更新日2016-04-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
1IS3
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LACTOSE AND MES-LIGANDED CONGERIN II
分子名称:CONGERIN II, BETA-LACTOSE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
著者Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1IS4
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LACTOSE-LIGANDED CONGERIN II
分子名称:CONGERIN II, BETA-LACTOSE
著者Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of a Conger Eel Galectin (Congerin II) at 1.45 A Resolution: Implication for the Accelerated Evolution of a New Ligand-Binding Site Following Gene Duplication
J.Mol.Biol., 321, 2002
1IS5
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LIGAND FREE CONGERIN II
分子名称:Congerin II
著者Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1IS6
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MES-LIGANDED CONGERIN II
分子名称:Congerin II, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
著者Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
6AL3
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LYS49 PLA2 BPII DERIVED FROM THE VENOM OF PROTOBOTHROPS FLAVOVIRIDIS.
分子名称:Basic phospholipase A2 BP-II, SULFATE ION
著者Matsui, T., Kamata, S., Suzuki, A., Oda-Ueda, N., Ogawa, T., Tanaka, Y.
登録日2018-09-05
公開日2019-01-16
最終更新日2019-03-06
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献SDS-induced oligomerization of Lys49-phospholipase A2from snake venom.
Sci Rep, 9, 2019
1TFK
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RIBONUCLEASE FROM ESCHERICHIA COLI COMPLEXED WITH ITS INHIBTOR PROTEIN
分子名称:Colicin D, Colicin D immunity protein, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
著者Yajima, S., Nakanishi, K., Takahashi, K., Ogawa, T., Kezuka, Y., Hidaka, M., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2004-05-27
公開日2005-03-01
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Relation between tRNase activity and the structure of colicin D according to X-ray crystallography
Biochem.Biophys.Res.Commun., 322, 2004
1TFO
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RIBONUCLEASE FROM ESCHERICHIA COLI COMPLEXED WITH ITS INHIBITOR PROTEIN
分子名称:Colicin D, Colicin D immunity protein
著者Yajima, S., Nakanishi, K., Takahashi, K., Ogawa, T., Kezuka, Y., Hidaka, M., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2004-05-27
公開日2005-03-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Relation between tRNase activity and the structure of colicin D according to X-ray crystallography
Biochem.Biophys.Res.Commun., 322, 2004
1WLC
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CONGERIN II Y16S/T88I DOUBLE MUTANT
分子名称:Congerin II, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
著者Shionyu-Mitsuyama, C., Ito, Y., Konno, A., Miwa, Y., Ogawa, T., Muramoto, K., Shirai, T.
登録日2004-06-22
公開日2005-06-07
最終更新日2015-02-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure
J.Mol.Biol., 347, 2005
1WLD
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CONGERIN II T88I SINGLE MUTANT
分子名称:CONGERIN II, BETA-D-GALACTOSE, BETA-D-GLUCOSE, ...
著者Shionyu-Mitsuyama, C., Ito, Y., Konno, A., Miwa, Y., Ogawa, T., Muramoto, K., Shirai, T.
登録日2004-06-22
公開日2005-06-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure
J.Mol.Biol., 347, 2005
1WLW
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CONGERIN II Y16S SINGLE MUTANT
分子名称:Congerin II, BETA-D-GALACTOSE, ALPHA-D-GLUCOSE, ...
著者Shionyu-Mitsuyama, C., Ito, Y., Konno, A., Miwa, Y., Ogawa, T., Muramoto, K., Shirai, T.
登録日2004-06-30
公開日2005-06-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure
J.Mol.Biol., 347, 2005
2DFX
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CRYSTAL STRUCTURE OF THE CARBOXY TERMINAL DOMAIN OF COLICIN E5 COMPLEXED WITH ITS INHIBITOR
分子名称:Colicin-E5, Colicin-E5 immunity protein
著者Yajima, S., Inoue, S., Ogawa, T., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2006-03-06
公開日2007-01-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
Nucleic Acids Res., 34, 2006
2DJH
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CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL RIBONUCLEASE DOMAIN OF COLICIN E5
分子名称:Colicin-E5, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, 2'-DEOXYURIDINE 3'-MONOPHOSPHATE
著者Yajima, S., Inoue, S., Ogawa, T., Nonaka, T., Ohsawa, K., Masaki, H.
登録日2006-04-03
公開日2007-01-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
Nucleic Acids Res., 34, 2006
2ZX0
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RHAMNOSE-BINDING LECTIN CSL3
分子名称:CSL3, PHOSPHATE ION, GLYCEROL
著者Shirai, T., Watababe, Y., Lee, M., Ogawa, T., Muramoto, K.
登録日2008-12-19
公開日2009-06-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
2ZX1
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RHAMNOSE-BINDING LECTIN CSL3
分子名称:CSL3, PHOSPHATE ION
著者Shirai, T., Watababe, Y., Lee, M., Ogawa, T., Muramoto, K.
登録日2008-12-19
公開日2009-06-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
2ZX2
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RHAMNOSE-BINDING LECTIN CSL3
分子名称:CSL3, PHOSPHATE ION, ALPHA-L-RHAMNOSE
著者Shirai, T., Watababe, Y., Lee, M., Ogawa, T., Muramoto, K.
登録日2008-12-19
公開日2009-06-30
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
2ZX3
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RHAMNOSE-BINDING LECTIN CSL3
分子名称:CSL3, BETA-D-GLUCOSE, ALPHA D-GALACTOSE, ...
著者Shirai, T., Watababe, Y., Lee, M., Ogawa, T., Muramoto, K.
登録日2008-12-19
公開日2009-06-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
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