Author results

2TMV
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VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION
Descriptor:RNA (5'-R(P*GP*AP*A)-3'), TMV COAT PROTEIN, CALCIUM ION
Authors:Stubbs, G., Pattanayek, R., Namba, K.
Deposit date:1988-09-15
Release date:1989-01-09
Last modified:2017-11-29
Method:FIBER DIFFRACTION (2.9 Å)
Cite:Visualization of protein-nucleic acid interactions in a virus. Refined structure of intact tobacco mosaic virus at 2.9 A resolution by X-ray fiber diffraction.
J.Mol.Biol., 208, 1989
3A5X
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L-TYPE STRAIGHT FLAGELLAR FILAMENT MADE OF FULL-LENGTH FLAGELLIN
Descriptor:Flagellin
Authors:Maki-Yonekura, S., Yonekura, K., Namba, K.
Deposit date:2009-08-13
Release date:2010-03-16
Last modified:2013-10-16
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Conformational change of flagellin for polymorphic supercoiling of the flagellar filament
Nat.Struct.Mol.Biol., 17, 2010
1VGL
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CRYSTAL STRUCTURE OF TETRAMERIC KAIB FROM T.ELONGATUS BP-1
Descriptor:Circadian clock protein kaiB, MERCURY (II) ION
Authors:Iwase, R., Imada, K., Hayashi, F., Uzumaki, T., Namba, K., Ishiura, M.
Deposit date:2004-04-27
Release date:2005-08-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Functionally important substructures of circadian clock protein KaiB in a unique tetramer complex.
J.Biol.Chem., 280, 2005
1UCU
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R-TYPE STRAIGHT FLAGELLAR FILAMENT MADE OF FULL-LENGTH FLAGELLIN
Descriptor:phase 1 Flagellin
Authors:Yonekura, K., Maki-Yonekura, S., Namba, K.
Deposit date:2003-04-22
Release date:2003-08-12
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy
NATURE, 424, 2003
2BGY
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FIT OF THE X-RAY STRUCUTRE OF THE BATERIAL FLAGELLAR HOOK FRAGMENT FLGE31 INTO AN EM MAP FROM THE HOOK OF CAULOBACTER CRESCENTUS.
Descriptor:FLAGELLAR HOOK PROTEIN FLGE
Authors:Shaikh, T.R., Thomas, D.R., Chen, J.Z., Samatey, F.A., Matsunami, H., Imada, K., Namba, K., DeRosier, D.J.
Deposit date:2005-01-06
Release date:2005-01-27
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (20 Å)
Cite:A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.
Proc.Natl.Acad.Sci.USA, 102, 2005
2BGZ
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ATOMIC MODEL OF THE BACTERIAL FLAGELLAR BASED ON DOCKING AN X-RAY DERIVED HOOK STRUCTURE INTO AN EM MAP.
Descriptor:FLAGELLAR HOOK PROTEIN FLGE
Authors:Shaikh, T.R., Thomas, D.R., Chen, J.Z., Samatey, F.A., Matsunami, H., Imada, K., Namba, K., Derosier, D.J.
Deposit date:2005-01-06
Release date:2005-01-27
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (12 Å)
Cite:A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.
Proc.Natl.Acad.Sci.USA, 102, 2005
3A5I
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STRUCTURE OF THE CYTOPLASMIC DOMAIN OF FLHA
Descriptor:Flagellar biosynthesis protein flhA
Authors:Imada, K., Saijo-Hamano, Y., Shimada, M., Namba, K.
Deposit date:2009-08-07
Release date:2010-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the cytoplasmic domain of FlhA and implication for flagellar type III protein export
Mol.Microbiol., 76, 2010
3AJW
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STRUCTURE OF FLIJ, A SOLUBLE COMPONENT OF FLAGELLAR TYPE III EXPORT APPARATUS
Descriptor:Flagellar fliJ protein, MERCURY (II) ION
Authors:Imada, K., Ibuki, T., Minamino, T., Namba, K.
Deposit date:2010-06-23
Release date:2011-02-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Common architecture of the flagellar type III protein export apparatus and F- and V-type ATPases
Nat.Struct.Mol.Biol., 18, 2011
5B0O
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STRUCTURE OF THE FLIH-FLII COMPLEX
Descriptor:Flagellum-specific ATP synthase, Flagellar assembly protein FliH, ADENOSINE-5'-DIPHOSPHATE
Authors:Imada, K., Uchida, Y., Kinoshita, M., Namba, K., Minamino, T.
Deposit date:2015-11-02
Release date:2016-03-23
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Insight into the flagella type III export revealed by the complex structure of the type III ATPase and its regulator
Proc.Natl.Acad.Sci.USA, 113, 2016
5H72
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF FLIP
Descriptor:Flagellar biosynthetic protein FliP
Authors:Fukumura, T., Kawaguchi, T., Saijo-Hamano, Y., Namba, K., Minamino, T., Imada, K.
Deposit date:2016-11-16
Release date:2017-08-02
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Assembly and stoichiometry of the core structure of the bacterial flagellar type III export gate complex
PLoS Biol., 15, 2017
1A05
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CRYSTAL STRUCTURE OF THE COMPLEX OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM THIOBACILLUS FERROOXIDANS WITH 3-ISOPROPYLMALATE
Descriptor:3-ISOPROPYLMALATE DEHYDROGENASE, MAGNESIUM ION, 3-ISOPROPYLMALIC ACID
Authors:Imada, K., Inagaki, K., Matsunami, H., Kawaguchi, H., Tanaka, H., Tanaka, N., Namba, K.
Deposit date:1997-12-09
Release date:1998-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of 3-isopropylmalate dehydrogenase in complex with 3-isopropylmalate at 2.0 A resolution: the role of Glu88 in the unique substrate-recognition mechanism.
Structure, 6, 1998
2D4V
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CRYSTAL STRUCTURE OF NAD DEPENDENT ISOCITRATE DEHYDROGENASE FROM ACIDITHIOBACILLUS THIOOXIDANS
Descriptor:isocitrate dehydrogenase, CITRATE ANION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Imada, K., Tamura, T., Namba, K., Inagaki, K.
Deposit date:2005-10-24
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and quantum chemical analysis of NAD+-dependent isocitrate dehydrogenase: hydride transfer and co-factor specificity
Proteins, 70, 2008
1IO1
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CRYSTAL STRUCTURE OF F41 FRAGMENT OF FLAGELLIN
Descriptor:PHASE 1 FLAGELLIN
Authors:Samatey, F.A., Imada, K., Nagashima, S., Vondervisz, F., Kumasaka, T., Yamamoto, M., Namba, K.
Deposit date:2000-12-28
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling
Nature, 410, 2001
1WLG
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CRYSTAL STRUCTURE OF FLGE31, A MAJOR FRAGMENT OF THE HOOK PROTEIN
Descriptor:Flagellar hook protein flgE
Authors:Samatey, F.A., Matsunami, H., Imada, K., Nagashima, S., Shaikh, T.R., Thomas, D.R., DeRosier, D.J., Kitao, A., Namba, K.
Deposit date:2004-06-25
Release date:2004-11-02
Last modified:2014-04-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism.
Nature, 431, 2004
2D4X
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CRYSTAL STRUCTURE OF A 26K FRAGMENT OF HAP3 (FLGL)
Descriptor:Flagellar hook-associated protein 3
Authors:Imada, K., Matsunami, H., Samatey, A.F., Nagashima, S., Namba, K.
Deposit date:2005-10-25
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the bacterial flagellar hook-filament junction
To be Published
2D4Y
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CRYSTAL STRUCTURE OF A 49K FRAGMENT OF HAP1 (FLGK)
Descriptor:Flagellar hook-associated protein 1
Authors:Imada, K., Matsunami, H., Samatey, A.F., Nagashima, S., Namba, K.
Deposit date:2005-10-25
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the bacterial flagellar hook-filament junction
To be Published
2DPY
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CRYSTAL STRUCTURE OF THE FLAGELLAR TYPE III ATPASE FLII
Descriptor:Flagellum-specific ATP synthase, ADENOSINE-5'-DIPHOSPHATE
Authors:Imada, K., Namba, K., Minamino, T.
Deposit date:2006-05-18
Release date:2006-12-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural similarity between the flagellar type III ATPase FliI and F1-ATPase subunits
Proc.Natl.Acad.Sci.Usa, 104, 2007
2ZF8
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CRYSTAL STRUCTURE OF MOTY
Descriptor:Component of sodium-driven polar flagellar motor
Authors:Imada, K., Kojima, S., Namba, K., Homma, M.
Deposit date:2007-12-25
Release date:2008-07-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZOV
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM I)
Descriptor:Chemotaxis protein motB
Authors:Imada, K., Kojima, S., Namba, K., Homma, M.
Deposit date:2008-06-09
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2ZVY
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM II)
Descriptor:Chemotaxis protein motB
Authors:Kojima, S., Homma, M., Namba, K., Imada, K.
Deposit date:2008-11-26
Release date:2009-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2ZVZ
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM III)
Descriptor:Chemotaxis protein motB
Authors:Imada, K., Kojima, S., Namba, K., Homma, S.
Deposit date:2008-11-26
Release date:2009-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
3A7M
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STRUCTURE OF FLIT, THE FLAGELLAR TYPE III CHAPERONE FOR FLID
Descriptor:Flagellar protein fliT
Authors:Imada, K., Minamino, T., Kinoshita, M., Namba, K.
Deposit date:2009-09-29
Release date:2010-04-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insight into the regulatory mechanisms of interactions of the flagellar type III chaperone FliT with its binding partners.
Proc.Natl.Acad.Sci.USA, 107, 2010
3AJC
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STRUCTURE OF THE MC DOMAIN OF FLIG (PEV), A CW-BIASED MUTANT
Descriptor:Flagellar motor switch protein fliG
Authors:Imada, K., Minamino, T., Kinoshita, M., Namba, K.
Deposit date:2010-05-27
Release date:2011-05-11
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insight into the rotational switching mechanism of the bacterial flagellar motor
Plos Biol., 9, 2011
3J6P
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PSEUDO-ATOMIC MODEL OF DYNEIN MICROTUBULE BINDING DOMAIN-TUBULIN COMPLEX BASED ON A CRYOEM MAP
Descriptor:Dynein heavy chain, cytoplasmic, Tubulin alpha-1A chain, ...
Authors:Uchimura, S., Fujii, T., Takazaki, H., Ayukawa, R., Nishikawa, Y., Minoura, I., Hachikubo, Y., Kurisu, G., Sutoh, K., Kon, T., Namba, K., Muto, E.
Deposit date:2014-03-20
Release date:2014-12-31
Last modified:2015-04-08
Method:ELECTRON MICROSCOPY (8.2 Å)
Cite:A flipped ion pair at the dynein-microtubule interface is critical for dynein motility and ATPase activation
J.Cell Biol., 208, 2015
5B3D
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STRUCTURE OF A FLAGELLAR TYPE III SECRETION CHAPERONE, FLGN
Descriptor:Flagella synthesis protein FlgN
Authors:Nakanishi, Y., Kinoshita, M., Namba, K., Minamino, T., Imada, K.
Deposit date:2016-02-15
Release date:2016-06-01
Last modified:2016-09-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Rearrangements of alpha-helical structures of FlgN chaperone control the binding affinity for its cognate substrates during flagellar type III export
Mol.Microbiol., 101, 2016
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