Author results

1UFK
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CRYSTAL STRUCTURE OF TT0836
Descriptor:TT0836 protein
Authors:Kaminishi, T., Sakai, H., Takemoto-Hori, C., Terada, T., Nakagawa, N., Maoka, N., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-31
Release date:2003-11-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of TT0836
To be Published
1UFL
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CRYSTAL STRUCTURE OF TT1020 FROM THERMUS THERMOPHILUS HB8
Descriptor:Nitrogen regulatory protein P-II
Authors:Wang, H., Sakai, H., Hori-Takemoto, C., Kaminishi, T., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-31
Release date:2003-11-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8.
J.Struct.Biol., 149, 2005
1V3R
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CRYSTAL STRUCTURE OF TT1020 FROM THERMUS THERMOPHILUS HB8
Descriptor:Nitrogen regulatory protein P-II
Authors:Wang, H., Sakai, H., Takemoto-Hori, C., Kaminishi, T., Yamaguchi, H., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-05
Release date:2004-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8.
J.Struct.Biol., 149, 2005
1V3S
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CRYSTAL STRUCTURE OF TT1020 FROM THERMUS THERMOPHILUS HB8
Descriptor:Nitrogen regulatory protein P-II, ADENOSINE-5'-TRIPHOSPHATE
Authors:Wang, H., Sakai, H., Takemoto-Hori, C., Kaminishi, T., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-05
Release date:2004-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8.
J.Struct.Biol., 149, 2005
1V9O
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CRYSTAL STRUCTURE OF TT1020 FROM THERMUS THERMOPHILUS HB8
Descriptor:NITROGEN REGULATORY PROTEIN PII, ADENOSINE-5'-DIPHOSPHATE
Authors:Wang, H., Sakai, H., Takemoto-Hori, C., Kaminishi, T., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-27
Release date:2005-01-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8.
J.Struct.Biol., 149, 2005
1VFJ
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CRYSTAL STRUCTURE OF TT1020 FROM THERMUS THERMOPHILUS HB8
Descriptor:nitrogen regulatory protein p-II
Authors:Wang, H., Sakai, H., Takemoto-Hori, C., Kaminishi, T., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-04-15
Release date:2005-01-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8
J.STRUCT.BIOL., 149, 2005
1WF3
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CRYSTAL STRUCTURE OF GTP-BINDING PROTEIN TT1341 FROM THERMUS THERMOPHILUS HB8
Descriptor:GTP-binding protein, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Kawazoe, M., Hori-Takemoto, C., Kaminishi, T., Sekine, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-25
Release date:2004-11-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8
To be Published
1WK4
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CRYSTAL STRUCTURE OF TTK003001606
Descriptor:ttk003001606, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Kaminishi, T., Sakai, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-30
Release date:2004-11-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of ttk003001606
To be Published
1X18
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CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT
Descriptor:5'-R(P*CP*GP*AP*UP*GP*GP*CP*GP*AP*AP*G)-3', RNA (31-MER), 5'-R(P*UP*UP*CP*CP*CP*GP*GP*GP*CP*CP*UP*GP*GP*GP*GP*CP*CP*CP*GP*C)-3', ...
Authors:Sharma, M.R., Barat, C., Agrawal, R.K.
Deposit date:2005-04-02
Release date:2005-05-17
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Interaction of Era with the 30S Ribosomal Subunit Implications for 30S Subunit Assembly
Mol.Cell, 18, 2005
1X1L
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INTERACTION OF ERA,A GTPASE PROTEIN, WITH THE 3'MINOR DOMAIN OF THE 16S RRNA WITHIN THE THERMUS THERMOPHILUS 30S SUBUNIT.
Descriptor:RNA (130-MER), GTP-binding protein era
Authors:Sharma, M.R., Barat, C., Agrawal, R.K.
Deposit date:2005-04-06
Release date:2005-05-17
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Interaction of Era with the 30S Ribosomal Subunit Implications for 30S Subunit Assembly
Mol.Cell, 18, 2005
1Z54
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CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN TT1821 FROM THERMUS THERMOPHILUS
Descriptor:probable thioesterase, GLYCEROL
Authors:Ihsanawati, Kaminishi, T., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-03-17
Release date:2005-09-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a hypothetical protein TT1821 from Thermus thermophilus
TO BE PUBLISHED
2CXH
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CRYSTAL STRUCTURE OF PROBABLE RIBOSOMAL BIOGENESIS PROTEIN FROM AEROPYRUM PERNIX K1
Descriptor:Probable brix-domain ribosomal biogenesis protein
Authors:Kawazoe, M., Takemoto, C., Hanawa-Suetsugu, K., Kaminishi, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-29
Release date:2005-12-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
To be Published
2CY2
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CRYSTAL STRUCTURE OF TTHA1209 IN COMPLEX WITH ACETYL COENZYME A
Descriptor:probable acetyltransferase, ACETYL COENZYME *A
Authors:Kaminishi, T., Takemoto, C., Uchikubo-Kamo, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-04
Release date:2006-01-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of TTHA1209 in complex with acetyl coenzyme A
To be Published
2DOG
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SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF RIMM FROM THERMUS THERMOPHILUS HB8
Descriptor:Probable 16S rRNA-processing protein rimM
Authors:Suzuki, S., Matsumoto, E., Tatsuguchi, A., Kawazoe, M., Kaminishi, T., Takemoto, C., Shirouzu, M., Muto, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-28
Release date:2007-04-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural characterization of the ribosome maturation protein, RimM
J.Bacteriol., 189, 2007
2DYI
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CRYSTAL STRUCTURE OF 16S RIBOSOMAL RNA PROCESSING PROTEIN RIMM FROM THERMUS THERMOPHILUS HB8
Descriptor:Probable 16S rRNA-processing protein rimM
Authors:Kawazoe, M., Takemoto, C., Kaminishi, T., Tatsuguchi, A., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-14
Release date:2007-03-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8
To be published
2DYJ
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CRYSTAL STRUCTURE OF RIBOSOME-BINDING FACTOR A FROM THERMUS THERMOPHILUS HB8
Descriptor:Ribosome-binding factor A
Authors:Kawazoe, M., Takemoto, C., Nakayama-Ushikoshi, R., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-14
Release date:2007-03-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
2DYL
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CRYSTAL STRUCTURE OF HUMAN MITOGEN-ACTIVATED PROTEIN KINASE KINASE 7 ACTIVATED MUTANT (S287D, T291D)
Descriptor:Dual specificity mitogen-activated protein kinase kinase 7
Authors:Kukimoto-Niino, M., Takagi, T., Kaminishi, T., Uchikubo-Kamo, T., Terada, T., Matsuzaki, O., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-15
Release date:2007-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of human mitogen-activated protein kinase kinase 7 activated mutant (S287D, T291D)
To be Published
2E5L
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A SNAPSHOT OF THE 30S RIBOSOMAL SUBUNIT CAPTURING MRNA VIA THE SHINE- DALGARNO INTERACTION
Descriptor:16S ribosomal RNA, 5'-R(*GP*AP*AP*AP*GP*A)-3', 30S ribosomal protein S2, ...
Authors:Kaminishi, T., Wilson, D.N., Takemoto, C., Harms, J.M., Kawazoe, M., Schluenzen, F., Hanawa-Suetsugu, K., Shirouzu, M., Fucini, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-21
Release date:2007-05-15
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine-Dalgarno interaction
Structure, 15, 2007
2HHH
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CRYSTAL STRUCTURE OF KASUGAMYCIN BOUND TO THE 30S RIBOSOMAL SUBUNIT
Descriptor:16S ribosomal RNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Schluenzen, F.
Deposit date:2006-06-28
Release date:2006-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation.
Nat.Struct.Mol.Biol., 13, 2006
2KHE
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SOLUTION STRUCTURE OF THE BACTERIAL TOXIN RELE FROM THERMUS THERMOPHILUS HB8
Descriptor:Toxin-like protein
Authors:Suzuki, S., Kawazoe, M., Kaminishi, T., Takemoto, C., Muto, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-04-03
Release date:2010-03-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the Bacterial Toxin Rele from Thermus Thermophilus HB8
To be Published
2PA2
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CRYSTAL STRUCTURE OF HUMAN RIBOSOMAL PROTEIN L10 CORE DOMAIN
Descriptor:60S ribosomal protein L10, POTASSIUM ION
Authors:Nishimura, M., Kaminishi, T., Takemoto, C., Kawazoe, M., Yoshida, T., Tanaka, A., Sugano, S., Shirouzu, M., Ohkubo, T., Yokoyama, S., Kobayashi, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-27
Release date:2008-03-11
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Human Ribosomal Protein L10 Core Domain Reveals Eukaryote-Specific Motifs in Addition to the Conserved Fold
J.Mol.Biol., 377, 2008
2R1C
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COORDINATES OF THE THERMUS THERMOPHILUS RIBOSOME BINDING FACTOR A (RBFA) HOMOLOGY MODEL AS FITTED INTO THE CRYO-EM MAP OF A 30S-RBFA COMPLEX
Descriptor:Ribosome-binding factor A
Authors:Datta, P.P., Wilson, D.N., Kawazoe, M., Swami, N.K., Kaminishi, T., Sharma, M.R., Booth, T.M., Takemoto, C., Fucini, P., Yokoyama, S., Agrawal, R.K.
Deposit date:2007-08-22
Release date:2008-03-18
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (12.5 Å)
Cite:Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
2R1G
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COORDINATES OF THE THERMUS THERMOPHILUS 30S COMPONENTS NEIGHBORING RBFA AS OBTAINED BY FITTING INTO THE CRYO-EM MAP OF A 30S-RBFA COMPLEX
Descriptor:16S RIBOSOMAL RNA HELIX 1, 16S RIBOSOMAL RNA HELIX 18, 16S RIBOSOMAL RNA HELIX 27, ...
Authors:Datta, P.P., Wilson, D.N., Kawazoe, M., Swami, N.K., Kaminishi, T., Sharma, M.R., Booth, T.M., Takemoto, C., Fucini, P., Yokoyama, S., Agrawal, R.K.
Deposit date:2007-08-22
Release date:2008-03-18
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (12.5 Å)
Cite:Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
2YV5
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CRYSTAL STRUCTURE OF YJEQ FROM AQUIFEX AEOLICUS
Descriptor:YjeQ protein, ZINC ION, CHLORIDE ION, ...
Authors:Wang, H., Kaminishi, T., Hanawa-Suetsugu, K., Takemoto, C., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-09
Release date:2008-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of YjeQ from Aquifex aeolicus
To be Published
2YWE
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CRYSTAL STRUCTURE OF LEPA FROM AQUIFEX AEOLICUS
Descriptor:GTP-binding protein lepA
Authors:Kawazoe, M., Takemoto, C., Kaminishi, T., Nishino, A., Nakayama-Ushikoshi, R., Hanawa-Suetsugu, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-20
Release date:2008-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structures of GTP-binding protein LepA from Aquifex aeolicus
To be Published
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