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1WW1
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BU of 1ww1 by Molmil
Crystal structure of tRNase Z from Thermotoga maritima
Descriptor: ZINC ION, tRNase Z
Authors:Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-30
Release date:2005-02-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the tRNA 3' Processing Endoribonuclease tRNase Z from Thermotoga maritima
J.Biol.Chem., 280, 2005
1UDS
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BU of 1uds by Molmil
Crystal structure of the tRNA processing enzyme RNase PH R126A mutant from Aquifex aeolicus
Descriptor: PHOSPHATE ION, Ribonuclease PH, SULFATE ION
Authors:Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-02
Release date:2003-09-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
1UDN
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BU of 1udn by Molmil
Crystal structure of the tRNA processing enzyme RNase PH from Aquifex aeolicus
Descriptor: PHOSPHATE ION, Ribonuclease PH, SULFATE ION
Authors:Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-02
Release date:2003-09-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
1UDO
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BU of 1udo by Molmil
Crystal structure of the tRNA processing enzyme RNase PH R86A mutant from Aquifex aeolicus
Descriptor: PHOSPHATE ION, Ribonuclease PH, SULFATE ION
Authors:Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-02
Release date:2003-09-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
1UDQ
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BU of 1udq by Molmil
Crystal structure of the tRNA processing enzyme RNase PH T125A mutant from Aquifex aeolicus
Descriptor: PHOSPHATE ION, Ribonuclease PH, SULFATE ION
Authors:Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-02
Release date:2003-09-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
2E7Y
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BU of 2e7y by Molmil
High resolution structure of T. maritima tRNase Z
Descriptor: S-1,2-PROPANEDIOL, SULFATE ION, ZINC ION, ...
Authors:Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-15
Release date:2007-09-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:The structure of the flexible arm of Thermotoga maritima tRNase Z differs from those of homologous enzymes
Acta Crystallogr.,Sect.F, 63, 2007
2YVT
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BU of 2yvt by Molmil
Crystal structure of aq_1956
Descriptor: Hypothetical protein aq_1956
Authors:Ishii, R, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-15
Release date:2007-10-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of aq_1956
To be Published
2YVU
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BU of 2yvu by Molmil
Crystal structure of APE1195
Descriptor: Probable adenylyl-sulfate kinase
Authors:Ishii, R, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-15
Release date:2007-10-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of APE1195
To be published
5B83
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BU of 5b83 by Molmil
Crystal structure of Optineurin UBAN in complex with linear ubiquitin
Descriptor: Optineurin, tetra ubiquitin
Authors:Ishii, R, Nureki, O.
Deposit date:2016-06-12
Release date:2016-09-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.694 Å)
Cite:Linear ubiquitination is involved in the pathogenesis of optineurin-associated amyotrophic lateral sclerosis
Nat Commun, 7, 2016
3W1W
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BU of 3w1w by Molmil
Protein-drug complex
Descriptor: 1,2-ETHANEDIOL, 2-HYDROXYBENZOIC ACID, CHOLIC ACID, ...
Authors:Ishii, R, Gupta, V, Yamaguchi, Y, Handa, H, Nureki, O.
Deposit date:2012-11-21
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.006 Å)
Cite:Salicylic Acid induces mitochondrial injury by inhibiting ferrochelatase heme biosynthesis activity
Mol.Pharmacol., 84, 2013
6IJF
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BU of 6ijf by Molmil
Crystal structure of the type VI effector-immunity complex (Tae4-Tai4) from Agrobacterium tumefaciens
Descriptor: PENTAETHYLENE GLYCOL, SULFATE ION, Tae4, ...
Authors:Fukuhara, S, Nakane, T, Yamashita, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2018-10-09
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the Agrobacterium tumefaciens type VI effector-immunity complex.
Acta Crystallogr F Struct Biol Commun, 74, 2018
6IJE
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BU of 6ije by Molmil
Crystal structure of the type VI amidase immunity (Tai4) from Agrobacterium tumefaciens
Descriptor: 1,2-ETHANEDIOL, Tai4
Authors:Fukuhara, S, Nakane, T, Yamashita, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2018-10-09
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of the Agrobacterium tumefaciens type VI effector-immunity complex.
Acta Crystallogr F Struct Biol Commun, 74, 2018
4XJ1
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BU of 4xj1 by Molmil
Crystal structure of Vibrio cholerae DncV apo form
Descriptor: 1,2-ETHANEDIOL, Cyclic AMP-GMP synthase
Authors:Kato, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4XJ4
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BU of 4xj4 by Molmil
Crystal structure of Vibrio cholerae DncV 3'-deoxy ATP bound form
Descriptor: 1,2-ETHANEDIOL, 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, Cyclic AMP-GMP synthase, ...
Authors:Kato, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.596 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4XJ5
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BU of 4xj5 by Molmil
Crystal structure of Vibrio cholerae DncV 3'-deoxy GTP bound form
Descriptor: 1,2-ETHANEDIOL, 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, Cyclic AMP-GMP synthase, ...
Authors:Kato, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.552 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4XJ6
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BU of 4xj6 by Molmil
Crystal structure of Escherichia coli DncV 3'-deoxy GTP bound form
Descriptor: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, VC0179-like protein
Authors:Kato, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4XJ3
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BU of 4xj3 by Molmil
Crystal structure of Vibrio cholerae DncV GTP bound form
Descriptor: 1,2-ETHANEDIOL, Cyclic AMP-GMP synthase, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Kato, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4MKP
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BU of 4mkp by Molmil
Crystal structure of human cGAS apo form
Descriptor: Cyclic GMP-AMP synthase, ZINC ION
Authors:Kato, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2013-09-05
Release date:2013-10-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.953 Å)
Cite:Structural and Functional Analyses of DNA-Sensing and Immune Activation by Human cGAS
Plos One, 8, 2013
4PDN
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BU of 4pdn by Molmil
Crystal structure of E. coli YfcM
Descriptor: MAGNESIUM ION, Uncharacterized protein
Authors:Kobayashi, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2014-04-19
Release date:2015-03-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.448 Å)
Cite:The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation.
Nucleic Acids Res., 42, 2014
1WWR
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BU of 1wwr by Molmil
Crystal structure of tRNA adenosine deaminase TadA from Aquifex aeolicus
Descriptor: ZINC ION, tRNA adenosine deaminase TadA
Authors:Kuratani, M, Ishii, R, Bessho, Y, Fukunaga, R, Sengoku, T, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-12
Release date:2005-02-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of tRNA Adenosine Deaminase (TadA) from Aquifex aeolicus
J.Biol.Chem., 280, 2005
5GVS
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BU of 5gvs by Molmil
Crystal structure of the DDX41 DEAD domain in an apo open form
Descriptor: Probable ATP-dependent RNA helicase DDX41
Authors:Omura, H, Oikawa, D, Nakane, T, Kato, M, Ishii, R, Goto, Y, Suga, H, Ishitani, R, Tokunaga, F, Nureki, O.
Deposit date:2016-09-06
Release date:2016-10-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Functional Analysis of DDX41: a bispecific immune receptor for DNA and cyclic dinucleotide
Sci Rep, 6, 2016
5GVR
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BU of 5gvr by Molmil
Crystal structure of the DDX41 DEAD domain in an apo closed form
Descriptor: (2S)-2-hydroxybutanedioic acid, Probable ATP-dependent RNA helicase DDX41
Authors:Omura, H, Oikawa, D, Nakane, T, Kato, M, Ishii, R, Goto, Y, Suga, H, Ishitani, R, Tokunaga, F, Nureki, O.
Deposit date:2016-09-06
Release date:2016-10-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Functional Analysis of DDX41: a bispecific immune receptor for DNA and cyclic dinucleotide
Sci Rep, 6, 2016
3VQV
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BU of 3vqv by Molmil
Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with AMPPNP (re-refined)
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Pyrrolysine--tRNA ligase
Authors:Yanagisawa, T, Sumida, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2012-04-01
Release date:2013-01-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site
Acta Crystallogr.,Sect.D, 69, 2013
3WTR
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BU of 3wtr by Molmil
Crystal structure of E. coli YfcM bound to Co(II)
Descriptor: COBALT (II) ION, Uncharacterized protein
Authors:Kobayashi, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2014-04-19
Release date:2015-04-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation
Nucleic Acids Res., 42, 2014
3WNC
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BU of 3wnc by Molmil
Crystal structure of EF-Pyl in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein translation elongation factor 1A
Authors:Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015

 

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PDB entries from 2024-09-18

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