Author results

1AYG
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SOLUTION STRUCTURE OF CYTOCHROME C-552, NMR, 20 STRUCTURES
Descriptor:CYTOCHROME C-552, HEME C
Authors:Hasegawa, J., Yoshida, T., Yamazaki, T., Sambongi, Y., Yu, Y., Igarashi, Y., Kodama, T., Yamazaki, K., Hakusui, H., Kyogoku, Y., Kobayashi, Y.
Deposit date:1997-11-04
Release date:1998-11-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of thermostable cytochrome c-552 from Hydrogenobacter thermophilus determined by 1H-NMR spectroscopy.
Biochemistry, 37, 1998
1DVV
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SOLUTION STRUCTURE OF THE QUINTUPLE MUTANT OF CYTOCHROME C-551 FROM PSEUDOMONAS AERUGINOSA
Descriptor:CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hasegawa, J., Uchiyama, S., Tanimoto, Y., Mizutani, M., Kobayashi, Y., Sambongi, Y., Igarashi, Y.
Deposit date:2000-01-22
Release date:2000-11-29
Last modified:2018-03-14
Method:SOLUTION NMR
Cite:Selected mutations in a mesophilic cytochrome c confer the stability of a thermophilic counterpart.
J.Biol.Chem., 275, 2000
5XF9
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CRYSTAL STRUCTURE OF NAD+-REDUCING [NIFE]-HYDROGENASE IN THE AIR-OXIDIZED STATE
Descriptor:NAD-reducing hydrogenase, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Shomura, Y., Taketa, M., Nakashima, H., Tai, H., Nakagawa, H., Ikeda, Y., Ishii, M., Igarashi, Y., Nishihara, H., Yoon, K.S., Ogo, S., Hirota, S., Higuchi, Y.
Deposit date:2017-04-09
Release date:2017-08-23
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structural basis of the redox switches in the NAD(+)-reducing soluble [NiFe]-hydrogenase
Science, 357, 2017
5XFA
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CRYSTAL STRUCTURE OF NAD+-REDUCING [NIFE]-HYDROGENASE IN THE H2-REDUCED STATE
Descriptor:NAD-reducing hydrogenase, IRON/SULFUR CLUSTER, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Shomura, Y., Taketa, M., Nakashima, H., Tai, H., Nakagawa, H., Ikeda, Y., Ishii, M., Igarashi, Y., Nishihara, H., Yoon, K.S., Ogo, S., Hirota, S., Higuchi, Y.
Deposit date:2017-04-09
Release date:2017-08-23
Last modified:2017-09-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of the redox switches in the NAD(+)-reducing soluble [NiFe]-hydrogenase
Science, 357, 2017
4IJ5
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CRYSTAL STRUCTURE OF A NOVEL-TYPE PHOSPHOSERINE PHOSPHATASE FROM HYDROGENOBACTER THERMOPHILUS TK-6
Descriptor:Phosphoserine phosphatase 1, CHLORIDE ION, 1,2-ETHANEDIOL
Authors:Chiba, Y., Horita, S., Ohtsuka, J., Arai, H., Nagata, K., Igarashi, Y., Tanokura, M., Ishii, M.
Deposit date:2012-12-21
Release date:2013-03-20
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis
J.Biol.Chem., 288, 2013
4IJ6
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CRYSTAL STRUCTURE OF A NOVEL-TYPE PHOSPHOSERINE PHOSPHATASE MUTANT (H9A) FROM HYDROGENOBACTER THERMOPHILUS TK-6 IN COMPLEX WITH L-PHOSPHOSERINE
Descriptor:Phosphoserine phosphatase 1, PHOSPHOSERINE, CHLORIDE ION, ...
Authors:Chiba, Y., Horita, S., Ohtsuka, J., Arai, H., Nagata, K., Igarashi, Y., Tanokura, M., Ishii, M.
Deposit date:2012-12-21
Release date:2013-03-20
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural units important for activity of a novel-type phosphoserine phosphatase from Hydrogenobacter thermophilus TK-6 revealed by crystal structure analysis
J.Biol.Chem., 288, 2013
5X5M
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CRYSTAL STRUCTURE OF A HYDROLASE ENCODED BY LIN2189 FROM LISTERIA INNOCUA
Descriptor:Lin2189 protein, DIMETHYL SULFOXIDE, (+)-Yatakemycin
Authors:Zhang, J.
Deposit date:2017-02-16
Release date:2017-12-06
Method:X-RAY DIFFRACTION (1.211 Å)
Cite:GyrI-like proteins catalyze cyclopropanoid hydrolysis to confer cellular protection
Nat Commun, 8, 2017
5F5L
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THE STRUCTURE OF MONOOXYGENASE KSTA11 IN THE BIOSYNTHETIC PATHWAY OF KOSINOSTATIN
Descriptor:Monooxygenase, GLYCEROL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE
Authors:Pan, L., Gong, Y.
Deposit date:2015-12-04
Release date:2016-12-21
Last modified:2017-03-01
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Hydroxyl regioisomerization of anthracycline catalyzed by a four-enzyme cascade
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5F5N
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THE STRUCTURE OF MONOOXYGENASE KSTA11 IN COMPLEX WITH NAD AND ITS SUBSTRATE
Descriptor:Monooxygenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, methyl (1~{R},2~{R},4~{S})-2-methyl-2,4,5,7,10-pentakis(oxidanyl)-6,11-bis(oxidanylidene)-3,4-dihydro-1~{H}-tetracene-1-carboxylate, ...
Authors:Pan, L., Gong, Y.
Deposit date:2015-12-04
Release date:2016-12-21
Last modified:2017-03-01
Method:X-RAY DIFFRACTION (1.304 Å)
Cite:Hydroxyl regioisomerization of anthracycline catalyzed by a four-enzyme cascade
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5CL3
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ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING A 3-METHYLADENINE ANALOG (100% SUBSTRATE AT 4 HOURS)
Descriptor:AlkD, DNA (5'-D(*CP*CP*CP*GP*AP*(DZM)P*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3')
Authors:Mullins, E.A., Eichman, B.F.
Deposit date:2015-07-16
Release date:2015-10-28
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (1.971 Å)
Cite:The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
5CL4
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ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING A 3-METHYLADENINE ANALOG OR DNA CONTAINING AN ABASIC SITE AND A FREE NUCLEOBASE (71% SUBSTRATE/29% PRODUCT AT 24 HOURS)
Descriptor:AlkD, DNA (5'-D(*CP*CP*CP*GP*AP*(DZM)P*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3'), ...
Authors:Mullins, E.A., Eichman, B.F.
Deposit date:2015-07-16
Release date:2015-10-28
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (1.866 Å)
Cite:The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
5CL5
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ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING A 3-METHYLADENINE ANALOG OR DNA CONTAINING AN ABASIC SITE AND A FREE NUCLEOBASE (51% SUBSTRATE/49% PRODUCT AT 48 HOURS)
Descriptor:AlkD, DNA (5'-D(*CP*CP*CP*GP*AP*(DZM)P*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3'), ...
Authors:Mullins, E.A., Eichman, B.F.
Deposit date:2015-07-16
Release date:2015-10-28
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.569 Å)
Cite:The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
5CL6
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ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING A 3-METHYLADENINE ANALOG OR DNA CONTAINING AN ABASIC SITE AND A FREE NUCLEOBASE (33% SUBSTRATE/67% PRODUCT AT 72 HOURS)
Descriptor:AlkD, DNA (5'-D(*CP*CP*CP*GP*AP*(DZM)P*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3'), ...
Authors:Mullins, E.A., Eichman, B.F.
Deposit date:2015-07-16
Release date:2015-10-28
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.541 Å)
Cite:The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
5CL7
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ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING A 3-METHYLADENINE ANALOG OR DNA CONTAINING AN ABASIC SITE AND A FREE NUCLEOBASE (18% SUBSTRATE/82% PRODUCT AT 96 HOURS)
Descriptor:AlkD, DNA (5'-D(*CP*CP*CP*GP*AP*(DZM)P*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3'), ...
Authors:Mullins, E.A., Eichman, B.F.
Deposit date:2015-07-16
Release date:2015-10-28
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
5CL8
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ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING AN ABASIC SITE AND A FREE NUCLEOBASE (100% PRODUCT AT 144 HOURS)
Descriptor:AlkD, DNA (5'-D(*CP*CP*CP*GP*AP*(ORP)P*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3'), ...
Authors:Mullins, E.A., Eichman, B.F.
Deposit date:2015-07-16
Release date:2015-10-28
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
5CL9
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ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING AN ABASIC SITE AND A FREE NUCLEOBASE (100% PRODUCT AT 240 HOURS)
Descriptor:AlkD, DNA (5'-D(*CP*CP*CP*GP*AP*(ORP)P*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3'), ...
Authors:Mullins, E.A., Eichman, B.F.
Deposit date:2015-07-16
Release date:2015-10-28
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.538 Å)
Cite:The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
5CLA
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ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING AN ABASIC SITE AND A FREE NUCLEOBASE (100% PRODUCT AT 360 HOURS)
Descriptor:AlkD, DNA (5'-D(*CP*CP*CP*GP*AP*(ORP)P*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3'), ...
Authors:Mullins, E.A., Eichman, B.F.
Deposit date:2015-07-16
Release date:2015-10-28
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.541 Å)
Cite:The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
5CLB
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ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING A 3-METHYLADENINE ANALOG (9-MER A)
Descriptor:AlkD, DNA (5'-D(*AP*AP*GP*CP*AP*(DZM)P*AP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*TP*TP*TP*GP*CP*T)-3')
Authors:Mullins, E.A., Eichman, B.F.
Deposit date:2015-07-16
Release date:2015-10-28
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (1.766 Å)
Cite:The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
5CLC
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ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING A 3-METHYLADENINE ANALOG (9-MER B)
Descriptor:AlkD, DNA (5'-D(*AP*AP*GP*CP*CP*(DZM)P*CP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*GP*TP*GP*GP*CP*T)-3')
Authors:Mullins, E.A., Eichman, B.F.
Deposit date:2015-07-16
Release date:2015-10-28
Last modified:2017-09-06
Method:X-RAY DIFFRACTION (1.729 Å)
Cite:The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
5CLD
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ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING AN OXOCARBENIUM-INTERMEDIATE ANALOG AND A FREE 3-METHYLADENINE NUCLEOBASE
Descriptor:AlkD, DNA (5'-D(*CP*CP*CP*GP*AP*(NRI)P*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3'), ...
Authors:Mullins, E.A., Eichman, B.F.
Deposit date:2015-07-16
Release date:2015-10-28
Last modified:2017-09-13
Method:X-RAY DIFFRACTION (1.541 Å)
Cite:The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
5CLE
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ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING AN ABASIC-SITE ANALOG AND A FREE 3-METHYLADENINE NUCLEOBASE
Descriptor:AlkD, DNA (5'-D(*CP*CP*CP*GP*AP*(3DR)P*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3'), ...
Authors:Mullins, E.A., Eichman, B.F.
Deposit date:2015-07-16
Release date:2015-10-28
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015
1YNR
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CRYSTAL STRUCTURE OF THE CYTOCHROME C-552 FROM HYDROGENOBACTER THERMOPHILUS AT 2.0 RESOLUTION
Descriptor:Cytochrome c-552, SULFATE ION, HEME C, ...
Authors:Travaglini-Allocatelli, C., Gianni, S., Dubey, V.K., Borgia, A., Di Matteo, A., Bonivento, D., Cutruzzola, F., Bren, K.L., Brunori, M.
Deposit date:2005-01-25
Release date:2005-05-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:An Obligatory Intermediate in the Folding Pathway of Cytochrome c552 from Hydrogenobacter thermophilus
J.Biol.Chem., 280, 2005
2EXV
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CRYSTAL STRUCTURE OF THE F7A MUTANT OF THE CYTOCHROME C551 FROM PSEUDOMONAS AERUGINOSA
Descriptor:Cytochrome c-551, HEME C, ACETIC ACID
Authors:Bonivento, D., Di Matteo, A., Borgia, A., Travaglini-Allocatelli, C., Brunori, M.
Deposit date:2005-11-09
Release date:2006-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Unveiling a Hidden Folding Intermediate in c-Type Cytochromes by Protein Engineering
J.Biol.Chem., 281, 2006