Author results

5VPO
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THE 70S P-SITE ASL SUFA6 COMPLEX
Descriptor:messenger RNA, 16S rRNA, 30S ribosomal protein S2, ...
Authors:Hong, S., Sunita, S., Dunkle, J.A., Maehigashi, T., Dunham, C.M.
Deposit date:2017-05-05
Release date:2018-09-26
Last modified:2018-11-07
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VPP
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THE 70S P-SITE TRNA SUFA6 COMPLEX
Descriptor:23S rRNA, 5S rRNA, 50S ribosomal protein L2, ...
Authors:Hong, S., Sunita, S., Dunkle, J.A., Maehigashi, T., Dunham, C.M.
Deposit date:2017-05-05
Release date:2018-09-26
Last modified:2018-11-07
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6AKV
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CRYSTAL STRUCTURE OF LYSB4, THE ENDOLYSIN FROM BACILLUS CEREUS-TARGETING BACTERIOPHAGE B4
Descriptor:LysB4, ZINC ION, SULFATE ION, ...
Authors:Hong, S., Ha, N.-C.
Deposit date:2018-09-03
Release date:2019-02-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of LysB4, an Endolysin fromBacillus cereus-Targeting Bacteriophage B4.
Mol. Cells, 42, 2019
5SZX
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EPSTEIN-BARR VIRUS ZTA DNA BINDING DOMAIN HOMODIMER IN COMPLEX WITH METHYLATED DNA
Descriptor:DNA (5'-D(*TP*CP*TP*TP*CP*AP*TP*(5CM)P*GP*CP*TP*CP*AP*GP*TP*GP*CP*T)-3'), DNA (5'-D(*AP*AP*GP*CP*AP*CP*TP*GP*AP*GP*(5CM)P*GP*AP*TP*GP*AP*AP*G)-3'), Zta transcription factor, ...
Authors:Hong, S., Horton, J.R., Cheng, X.
Deposit date:2016-08-15
Release date:2017-03-01
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.251 Å)
Cite:Methyl-dependent and spatial-specific DNA recognition by the orthologous transcription factors human AP-1 and Epstein-Barr virus Zta.
Nucleic Acids Res., 45, 2017
5T01
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HUMAN C-JUN DNA BINDING DOMAIN HOMODIMER IN COMPLEX WITH METHYLATED DNA
Descriptor:DNA (5'-D(P*CP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*GP*TP*CP*CP*AP*T)-3'), DNA (5'-D(*AP*AP*TP*GP*GP*AP*(5CM)P*GP*AP*GP*TP*CP*AP*TP*AP*GP*GP*AP*G)-3'), Transcription factor AP-1
Authors:Hong, S., Horton, J.R., Cheng, X.
Deposit date:2016-08-15
Release date:2017-03-01
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Methyl-dependent and spatial-specific DNA recognition by the orthologous transcription factors human AP-1 and Epstein-Barr virus Zta.
Nucleic Acids Res., 45, 2017
5YHR
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CRYSTAL STRUCTURE OF THE ANTI-CRISPR PROTEIN, ACRF2
Descriptor:Anti-CRISPR protein 30, CALCIUM ION
Authors:Hong, S., Ka, D., Bae, E.
Deposit date:2017-09-29
Release date:2018-02-07
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:CRISPR RNA and anti-CRISPR protein binding to theXanthomonas albilineansCsy1-Csy2 heterodimer in the type I-F CRISPR-Cas system
J. Biol. Chem., 293, 2018
5ZQJ
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CRYSTAL STRUCTURE OF BETA-XYLOSIDASE FROM BACILLUS PUMILUS
Descriptor:Beta-xylosidase, GLYCEROL
Authors:Ha, N.C., Hong, S., Jo, I.
Deposit date:2018-04-19
Release date:2018-05-30
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structure-based protein engineering of bacterial beta-xylosidase to increase the production yield of xylobiose from xylose
Biochem. Biophys. Res. Commun., 501, 2018
5ZQS
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CRYSTAL STRUCTURE OF BETA-XYLOSIDASE MUTANT (E186Q/F503Y) FROM BACILLUS PUMILUS
Descriptor:Beta-xylosidase, 4-O-beta-D-xylopyranosyl-beta-D-xylopyranose, BETA-D-XYLOPYRANOSE
Authors:Ha, N.C., Hong, S., Jo, I.
Deposit date:2018-04-20
Release date:2018-05-30
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (1.782 Å)
Cite:Structure-based protein engineering of bacterial beta-xylosidase to increase the production yield of xylobiose from xylose
Biochem. Biophys. Res. Commun., 501, 2018
5ZQX
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CRYSTAL STRUCTURE OF BETA-XYLOSIDASE MUTANT (E186Q) FROM BACILLUS PUMILUS
Descriptor:Beta-xylosidase, 4-O-beta-D-xylopyranosyl-beta-D-xylopyranose
Authors:Ha, N.C., Hong, S., Jo, I.
Deposit date:2018-04-20
Release date:2018-05-30
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-based protein engineering of bacterial beta-xylosidase to increase the production yield of xylobiose from xylose
Biochem. Biophys. Res. Commun., 501, 2018
5YDO
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REGULATORY DOMAIN OF HYPT FROM SALMONELLA TYPHIMURIUM (APO-FORM)
Descriptor:Cell density-dependent motility repressor, SULFATE ION
Authors:Jo, I., Hong, S., Ahn, J., Ha, N.C.
Deposit date:2017-09-13
Release date:2018-11-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Novel architecture and action mechanism of HypT from Salmonella Typhimurium, a hypochlorite-specific LysR-type transcriptional regulator
To Be Published
5YDV
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REGULATORY DOMAIN OF HYPT FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH HOCL (HOCL-BOUND FORM)
Descriptor:Cell density-dependent motility repressor, hypochlorous acid, SULFATE ION
Authors:Jo, I., Hong, S., Ahn, J., Ha, N.C.
Deposit date:2017-09-14
Release date:2018-11-28
Method:X-RAY DIFFRACTION (1.752 Å)
Cite:Novel architecture and action mechanism of HypT from Salmonella Typhimurium, a hypochlorite-specific LysR-type transcriptional regulator
To Be Published
5YDW
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FULL-LENGTH STRUCTURE OF HYPT FROM SALMONELLA TYPHIMURIUMA (HYPOCHLORITE-SPECIFIC LYSR-TYPE TRANSCRIPTIONAL REGULATOR)
Descriptor:Cell density-dependent motility repressor
Authors:Jo, I., Hong, S., Ahn, J., Ha, N.C.
Deposit date:2017-09-15
Release date:2018-11-28
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Novel architecture and action mechanism of HypT from Salmonella Typhimurium, a hypochlorite-specific LysR-type transcriptional regulator
To Be Published
5YER
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REGULATORY DOMAIN OF HYPT FROM SALMONELLA TYPHIMURIUM (BROMIDE ION-BOUND)
Descriptor:Cell density-dependent motility repressor, BROMIDE ION, SULFATE ION
Authors:Jo, I., Hong, S., Ahn, J., Ha, N.C.
Deposit date:2017-09-19
Release date:2018-11-28
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Novel architecture and action mechanism of HypT from Salmonella Typhimurium, a hypochlorite-specific LysR-type transcriptional regulator
To Be Published
5YEZ
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REGULATORY DOMAIN OF HYPT M206Q MUTANT FROM SALMONELLA TYPHIMURIUM
Descriptor:Cell density-dependent motility repressor
Authors:Jo, I., Hong, S., Ahn, J., Ha, N.C.
Deposit date:2017-09-20
Release date:2018-10-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Novel architecture and action mechanism of HypT from Salmonella Typhimurium, a hypochlorite-specific LysR-type transcriptional regulator
To Be Published
4FNC
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HUMAN TDG IN A POST-REACTIVE COMPLEX WITH 5-HYDROXYMETHYLURACIL (5HMU)
Descriptor:G/T mismatch-specific thymine DNA glycosylase, DNA (28-MER), DNA (29-MER), ...
Authors:Hashimoto, H., Hong, S., Bhagwat, A.S., Zhang, X., Cheng, X.
Deposit date:2012-06-19
Release date:2012-09-19
Last modified:2014-07-09
Method:X-RAY DIFFRACTION (2.493 Å)
Cite:Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation.
Nucleic Acids Res., 40, 2012
5UQ7
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70S RIBOSOME COMPLEX WITH DNAX MRNA STEMLOOP AND E-SITE TRNA ("IN" CONFORMATION)
Descriptor:23S rRNA, 5S rRNA, 50S ribosomal protein L2, ...
Authors:Zhang, Y., Hong, S., Skiniotis, G., Dunham, C.M.
Deposit date:2017-02-07
Release date:2018-03-07
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Alternative Mode of E-Site tRNA Binding in the Presence of a Downstream mRNA Stem Loop at the Entrance Channel.
Structure, 26, 2018
5UQ8
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70S RIBOSOME COMPLEX WITH DNAX MRNA STEM-LOOP AND E-SITE TRNA ("OUT" CONFORMATION)
Descriptor:23S rRNA, 5S rRNA, 50S ribosomal protein L2, ...
Authors:Zhang, Y., Hong, S., Skiniotis, G., Dunham, C.M.
Deposit date:2017-02-07
Release date:2018-03-07
Last modified:2018-03-21
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Alternative Mode of E-Site tRNA Binding in the Presence of a Downstream mRNA Stem Loop at the Entrance Channel.
Structure, 26, 2018
5Y9S
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CRYSTAL STRUCTURE OF VV2_1132, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR
Descriptor:VV2_1132, BROMIDE ION
Authors:Jang, Y., Hong, S., Jo, I., Ahn, J., Ha, N.C.
Deposit date:2017-08-28
Release date:2018-03-28
Last modified:2018-05-09
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:A Novel Tetrameric Assembly Configuration in VV2_1132, a LysR-Type Transcriptional Regulator inVibrio vulnificus
Mol. Cells, 41, 2018
2NYC
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CRYSTAL STRUCTURE OF THE BATEMAN2 DOMAIN OF YEAST SNF4
Descriptor:Nuclear protein SNF4
Authors:Rudolph, M.J., Amodeo, G.A., Iram, S., Hong, S., Pirino, G., Carlson, M., Tong, L.
Deposit date:2006-11-20
Release date:2006-12-12
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the Bateman2 domain of yeast Snf4: dimeric association and relevance for AMP binding.
Structure, 15, 2007
2NYE
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CRYSTAL STRUCTURE OF THE BATEMAN2 DOMAIN OF YEAST SNF4
Descriptor:Nuclear protein SNF4
Authors:Rudolph, M.J., Amodeo, G.A., Iram, S., Hong, S., Pirino, G., Carlson, M., Tong, L.
Deposit date:2006-11-20
Release date:2006-12-12
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the Bateman2 domain of yeast Snf4: dimeric association and relevance for AMP binding.
Structure, 15, 2007
4UBD
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CRYSTAL STRUCTURE OF A NEUTRALIZING HUMAN MONOCLONAL ANTIBODY WITH 1968 H3 HA
Descriptor:Hemagglutinin HA1 chain, Hemagglutinin HA2 chain, monoclonal antibody H chain, ...
Authors:Shore, D.A., Yang, H., Cho, M., Donis, R.O., Stevens, J.
Deposit date:2014-08-12
Release date:2015-06-24
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:A potent broad-spectrum protective human monoclonal antibody crosslinking two haemagglutinin monomers of influenza A virus.
Nat Commun, 6, 2015
6BTM
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STRUCTURE OF ALTERNATIVE COMPLEX III FROM FLAVOBACTERIUM JOHNSONIAE (WILD TYPE)
Descriptor:Alternative Complex III subunit A, Alternative Complex III subunit B, Alternative Complex III subunit C, ...
Authors:Sun, C., Benlekbir, S., Venkatakrishnan, P., Yuhang, W., Tajkhorshid, E., Rubinstein, J.L., Gennis, R.B.
Deposit date:2017-12-07
Release date:2018-05-09
Last modified:2019-02-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of the alternative complex III in a supercomplex with cytochrome oxidase.
Nature, 557, 2018
3Q2L
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MOUSE E-CADHERIN EC1-2 V81D MUTANT
Descriptor:Cadherin-1, CALCIUM ION, PENTAETHYLENE GLYCOL
Authors:Harrison, O.J., Jin, X., Shapiro, L.
Deposit date:2010-12-20
Release date:2011-02-23
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The extracellular architecture of adherens junctions revealed by crystal structures of type I cadherins.
Structure, 19, 2011
3Q2N
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MOUSE E-CADHERIN EC1-2 L175D MUTANT
Descriptor:Cadherin-1, CALCIUM ION, TETRAETHYLENE GLYCOL
Authors:Harrison, O.J., Jin, X., Shapiro, L.
Deposit date:2010-12-20
Release date:2011-02-23
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:The extracellular architecture of adherens junctions revealed by crystal structures of type I cadherins.
Structure, 19, 2011
3Q2V
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CRYSTAL STRUCTURE OF MOUSE E-CADHERIN ECTODOMAIN
Descriptor:Cadherin-1, CALCIUM ION, MANGANESE (II) ION, ...
Authors:Jin, X., Harrison, O.J., Shapiro, L.
Deposit date:2010-12-20
Release date:2011-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:The extracellular architecture of adherens junctions revealed by crystal structures of type I cadherins.
Structure, 19, 2011
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