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6NWD
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BU of 6nwd by Molmil
X-ray Crystallographic structure of Gloeobacter rhodopsin
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, DECANE, DODECANE, ...
Authors:Ernst, O.P, Morizumi, T, Ou, W.L.
Deposit date:2019-02-06
Release date:2019-08-14
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray Crystallographic Structure and Oligomerization of Gloeobacter Rhodopsin.
Sci Rep, 9, 2019
3DQB
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BU of 3dqb by Molmil
Crystal structure of the active G-protein-coupled receptor opsin in complex with a C-terminal peptide derived from the Galpha subunit of transducin
Descriptor: 11meric peptide form Guanine nucleotide-binding protein G(t) subunit alpha-1, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PALMITIC ACID, ...
Authors:Scheerer, P, Park, J.H, Hildebrand, P.W, Kim, Y.J, Krauss, N, Choe, H.-W, Hofmann, K.P, Ernst, O.P.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of opsin in its G-protein-interacting conformation
Nature, 455, 2008
7U55
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BU of 7u55 by Molmil
Crystal structure of Thermoplasmatales archaeon heliorhodopsin at pH 4.5
Descriptor: CHLORIDE ION, DODECANE, Heliorhodopsin, ...
Authors:Besaw, J.E, De Guzman, P, Miller, R.J.D, Ernst, O.P.
Deposit date:2022-03-01
Release date:2022-09-07
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Low pH structure of heliorhodopsin reveals chloride binding site and intramolecular signaling pathway.
Sci Rep, 12, 2022
3CAP
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BU of 3cap by Molmil
Crystal Structure of Native Opsin: the G Protein-Coupled Receptor Rhodopsin in its Ligand-free State
Descriptor: 2-O-octyl-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PALMITIC ACID, ...
Authors:Park, J.H, Scheerer, P, Hofmann, K.P, Choe, H.-W, Ernst, O.P.
Deposit date:2008-02-20
Release date:2008-06-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the ligand-free G-protein-coupled receptor opsin
Nature, 454, 2008
9CDC
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BU of 9cdc by Molmil
Kalium channelrhodopsin 1 C110A mutant from Hyphochytrium catenoides, Dark State
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CHOLESTEROL, Kalium channelrhodopsin 1 C110A, ...
Authors:Morizumi, T, Kim, K, Ernst, O.P.
Deposit date:2024-06-24
Release date:2025-02-19
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structural insights into light-gating of potassium-selective channelrhodopsin.
Nat Commun, 16, 2025
9CDE
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BU of 9cde by Molmil
Kalium channelrhodopsin 1 C110A mutant from Hyphochytrium catenoides, Continuous Illumination State
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CHOLESTEROL, Kalium Channelrhodopsin 1 C110A - Continuous Illumination State, ...
Authors:Morizumi, T, Kim, K, Ernst, O.P.
Deposit date:2024-06-24
Release date:2025-02-19
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Structural insights into light-gating of potassium-selective channelrhodopsin.
Nat Commun, 16, 2025
9CDD
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BU of 9cdd by Molmil
Kalium channelrhodopsin 1 C110A mutant from Hyphochytrium catenoides, Laser-Flash-Illuminated
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CHOLESTEROL, Kalium Channelrhodopsin 1, ...
Authors:Morizumi, T, Kim, K, Ernst, O.P.
Deposit date:2024-06-24
Release date:2025-02-19
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Structural insights into light-gating of potassium-selective channelrhodopsin.
Nat Commun, 16, 2025
6BK9
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BU of 6bk9 by Molmil
Crystal Structure of Squid Arrestin
Descriptor: CHLORIDE ION, Visual arrestin
Authors:Eger, B.T, Bandyopadhyay, A, Yedidi, R.S, Ernst, O.P.
Deposit date:2017-11-08
Release date:2018-09-19
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.00005579 Å)
Cite:A Novel Polar Core and Weakly Fixed C-Tail in Squid Arrestin Provide New Insight into Interaction with Rhodopsin.
J. Mol. Biol., 430, 2018
8GI8
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BU of 8gi8 by Molmil
Kalium channelrhodopsin 1 from Hyphochytrium catenoides (HcKCR1) embedded in peptidisc
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CHOLESTEROL, Kalium Channelrhodopsin 1, ...
Authors:Morizumi, T, Kim, K, Li, H, Spudich, J.L, Ernst, O.P.
Deposit date:2023-03-13
Release date:2023-07-26
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Structures of channelrhodopsin paralogs in peptidiscs explain their contrasting K + and Na + selectivities.
Nat Commun, 14, 2023
8GI9
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BU of 8gi9 by Molmil
Cation channelrhodopsin from Hyphochytrium catenoides (HcCCR) embedded in peptidisc
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CHOLESTEROL, Cation Channelrhodopsin, ...
Authors:Morizumi, T, Kim, K, Li, H, Spudich, J.L, Ernst, O.P.
Deposit date:2023-03-13
Release date:2023-07-26
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Structures of channelrhodopsin paralogs in peptidiscs explain their contrasting K + and Na + selectivities.
Nat Commun, 14, 2023
8EL2
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BU of 8el2 by Molmil
SARS-CoV-2 RBD bound to neutralizing antibody Fab ICO-hu23
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab ICO-hu23 Heavy Chain, Fab ICO-hu23 Light Chain, ...
Authors:Besaw, J.E, Kuo, A, Morizumi, T, Ernst, O.P.
Deposit date:2022-09-22
Release date:2023-07-19
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Broadly neutralizing humanized SARS-CoV-2 antibody binds to a conserved epitope on Spike and provides antiviral protection through inhalation-based delivery in non-human primates.
Plos Pathog., 19, 2023
8ELJ
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BU of 8elj by Molmil
SARS-CoV-2 spike glycoprotein in complex with the ICO-hu23 neutralizing antibody Fab fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ICO-hu23 antibody Fab heavy chain, ...
Authors:Yee, A.W, Morizumi, T, Kim, K, Kuo, A, Ernst, O.P.
Deposit date:2022-09-24
Release date:2023-07-19
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Broadly neutralizing humanized SARS-CoV-2 antibody binds to a conserved epitope on Spike and provides antiviral protection through inhalation-based delivery in non-human primates.
Plos Pathog., 19, 2023
6V51
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BU of 6v51 by Molmil
Spin-labeled T4 Lysozyme (9/131FnbY)-(4-Amino-TEMPO)
Descriptor: 4-amino-2,2,6,6-tetramethylpiperidin-1-ol, Endolysin
Authors:Liu, J, Morizumi, T, Ou, W.L, Wang, L, Ernst, O.P.
Deposit date:2019-12-02
Release date:2020-10-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Genetically Encoded Quinone Methides Enabling Rapid, Site-Specific, and Photocontrolled Protein Modification with Amine Reagents.
J.Am.Chem.Soc., 142, 2020
3PQR
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BU of 3pqr by Molmil
Crystal structure of Metarhodopsin II in complex with a C-terminal peptide derived from the Galpha subunit of transducin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Guanine nucleotide-binding protein G(t) subunit alpha-1, ...
Authors:Choe, H.-W, Kim, Y.J, Park, J.H, Morizumi, T, Pai, E.F, Krauss, N, Hofmann, K.P, Scheerer, P, Ernst, O.P.
Deposit date:2010-11-26
Release date:2011-03-09
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of metarhodopsin II.
Nature, 471, 2011
3PXO
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BU of 3pxo by Molmil
Crystal structure of Metarhodopsin II
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PALMITIC ACID, RETINAL, ...
Authors:Choe, H.-W, Kim, Y.J, Park, J.H, Morizumi, T, Pai, E.F, Krauss, N, Hofmann, K.P, Scheerer, P, Ernst, O.P.
Deposit date:2010-12-10
Release date:2011-03-09
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of metarhodopsin II.
Nature, 471, 2011
4J4Q
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BU of 4j4q by Molmil
Crystal structure of active conformation of GPCR opsin stabilized by octylglucoside
Descriptor: ACETATE ION, Guanine nucleotide-binding protein G(t) subunit alpha-1, PALMITIC ACID, ...
Authors:Park, J.H, Morizumi, T, Li, Y, Hong, J.E, Pai, E.F, Hofmann, K.P, Choe, H.W, Ernst, O.P.
Deposit date:2013-02-07
Release date:2013-10-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Opsin, a structural model for olfactory receptors?
Angew.Chem.Int.Ed.Engl., 52, 2013
5JGZ
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BU of 5jgz by Molmil
Spin-Labeled T4 Lysozyme Construct T151V1
Descriptor: CHLORIDE ION, Endolysin, HEXANE-1,6-DIOL, ...
Authors:Balo, A.R, Feyrer, H, Ernst, O.P.
Deposit date:2016-04-20
Release date:2017-02-15
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.534 Å)
Cite:Toward Precise Interpretation of DEER-Based Distance Distributions: Insights from Structural Characterization of V1 Spin-Labeled Side Chains.
Biochemistry, 55, 2016
5JOM
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BU of 5jom by Molmil
X-ray structure of CO-bound sperm whale myoglobin using a fixed target crystallography chip
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Oghbaey, S, Sarracini, A, Ginn, H.M, Pare-Labrosse, O, Kuo, A, Marx, A, Epp, S.W, Sherrell, D.A, Eger, B.T, Zhong, Y, Loch, R, Mariani, V, Alonso-Mori, R, Nelson, S, Lemke, H.T, Owen, R.L, Pearson, A.R, Stuart, D.I, Ernst, O.P, Mueller-Werkmeister, H.M, Miller, R.J.D.
Deposit date:2016-05-02
Release date:2016-08-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Fixed target combined with spectral mapping: approaching 100% hit rates for serial crystallography.
Acta Crystallogr D Struct Biol, 72, 2016
6WP8
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BU of 6wp8 by Molmil
Proton-pumping mutant of Mastigocladopsis repens rhodopsin chloride pump
Descriptor: Proton-pumping rhodopsin chloride pump, RETINAL, octyl beta-D-glucopyranoside
Authors:Besaw, J.E, Ernst, O.P, Ou, W, Morizumi, T.
Deposit date:2020-04-26
Release date:2020-07-29
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structures of a chloride-pumping microbial rhodopsin and its proton-pumping mutant illuminate proton transfer determinants.
J.Biol.Chem., 295, 2020
6XL3
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BU of 6xl3 by Molmil
Mastigocladopsis repens rhodopsin chloride pump
Descriptor: CHLORIDE ION, DECANE, Mastigocladopsis repens rhodopsin chloride pump, ...
Authors:Besaw, J.E, Ernst, O.P, Ou, W, Morizumi, T.
Deposit date:2020-06-28
Release date:2020-07-29
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:The crystal structures of a chloride-pumping microbial rhodopsin and its proton-pumping mutant illuminate proton transfer determinants.
J.Biol.Chem., 295, 2020
7JJO
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BU of 7jjo by Molmil
Structural Basis of the Activation of Heterotrimeric Gs-protein by Isoproterenol-bound Beta1-Adrenergic Receptor
Descriptor: Beta1-Adrenergic Receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Su, M, Zhu, L, Zhang, Y, Paknejad, N, Dey, R, Huang, J, Lee, M.Y, Williams, D, Jordan, K.D, Eng, E.T, Ernst, O.P, Meyerson, J.R, Hite, R.K, Walz, T, Liu, W, Huang, X.Y.
Deposit date:2020-07-27
Release date:2020-09-02
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural Basis of the Activation of Heterotrimeric Gs-Protein by Isoproterenol-Bound beta 1 -Adrenergic Receptor.
Mol.Cell, 80, 2020
7F1W
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BU of 7f1w by Molmil
X-ray crystal structure of visual arrestin complexed with inositol hexaphosphate
Descriptor: INOSITOL HEXAKISPHOSPHATE, S-arrestin
Authors:Kang, M, Jang, K, Eger, B.T, Ernst, O.P, Choe, H.W, Kim, Y.J.
Deposit date:2021-06-10
Release date:2021-10-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.097 Å)
Cite:Structural evidence for visual arrestin priming via complexation of phosphoinositols.
Structure, 30, 2022
7F1X
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BU of 7f1x by Molmil
X-ray crystal structure of visual arrestin complexed with inositol 1,4,5-triphosphate
Descriptor: 1,2-ETHANEDIOL, D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, PENTANEDIAL, ...
Authors:Jang, K, Kang, M, Eger, B.T, Choe, H.W, Ernst, O.P, Kim, Y.J.
Deposit date:2021-06-10
Release date:2021-10-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural evidence for visual arrestin priming via complexation of phosphoinositols.
Structure, 30, 2022
6PEL
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BU of 6pel by Molmil
Crystal structure of bovine opsin with citronellol bound
Descriptor: (3R)-3,7-dimethyloct-6-en-1-ol, ILENLKDVGLF G alpha peptide CT2, PALMITIC ACID, ...
Authors:Eger, B.T, Morizumi, T, Ernst, O.P.
Deposit date:2019-06-20
Release date:2020-06-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.186 Å)
Cite:Odorant-binding site in visual opsin
To Be Published
6PGS
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BU of 6pgs by Molmil
Crystal structure of bovine opsin with geraniol bound
Descriptor: G alpha CT2 peptide, Geraniol, PALMITIC ACID, ...
Authors:Eger, B.T, Morizumi, T, Ernst, O.P.
Deposit date:2019-06-24
Release date:2020-07-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.905 Å)
Cite:Odorant-binding site in visual opsin
To Be Published

 

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