3J3X | |
3J9X | | A VIRUS THAT INFECTS A HYPERTHERMOPHILE ENCAPSIDATES A-FORM DNA | | Descriptor: | coat protein, DNA | | Authors: | DiMaio, F., Yu, X., Rensen, E., Krupovic, M., Prangishvili, D., Egelman, E. | | Deposit date: | 2015-03-21 | | Release date: | 2015-06-03 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (3.8 Å) | | Cite: | A virus that infects a hyperthermophile encapsidates A-form DNA.
Science, 348, 2015
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5A2T | | THE MOLECULAR BASIS FOR FLEXIBILITY IN THE FLEXIBLE FILAMENTOUS PLANT VIRUSES | | Descriptor: | COAT PROTEIN, BAMBOO MOSAIC VIRUS | | Authors: | DiMaio, F., Chen, C.C., Yu, X., Frenz, B., Hsu, Y.H., Lin, N.S., Egelman, E.H. | | Deposit date: | 2015-05-23 | | Release date: | 2015-07-22 | | Last modified: | 2015-08-19 | | Method: | ELECTRON MICROSCOPY (5.6 Å) | | Cite: | The Molecular Basis for Flexibility in the Flexible Filamentous Plant Viruses.
Nat.Struct.Mol.Biol., 22, 2015
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5CW9 | | CRYSTAL STRUCTURE OF DE NOVO DESIGNED FERREDOXIN-FERREDOXIN DOMAIN INSERTION PROTEIN | | Descriptor: | De novo designed ferredoxin-ferredoxin domain insertion protein | | Authors: | DiMaio, F., King, I.C., Gleixner, J., Doyle, L., Stoddard, B., Baker, D. | | Deposit date: | 2015-07-28 | | Release date: | 2015-09-23 | | Last modified: | 2020-01-01 | | Method: | X-RAY DIFFRACTION (3.108 Å) | | Cite: | Precise assembly of complex beta sheet topologies from de novo designed building blocks.
Elife, 4, 2015
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3SQF | | CRYSTAL STRUCTURE OF MONOMERIC M-PMV RETROVIRAL PROTEASE | | Descriptor: | Protease | | Authors: | Jaskolski, M., Kazmierczyk, M., Gilski, M., Krzywda, S., Pichova, I., Zabranska, H., Khatib, F., DiMaio, F., Cooper, S., Thompson, J., Popovic, Z., Baker, D., Group, Foldit Contenders | | Deposit date: | 2011-07-05 | | Release date: | 2011-09-21 | | Last modified: | 2012-03-21 | | Method: | X-RAY DIFFRACTION (1.6324 Å) | | Cite: | Crystal structure of a monomeric retroviral protease solved by protein folding game players.
Nat.Struct.Mol.Biol., 18, 2011
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4RZP | | CRYSTAL STRUCTURE OF ENGINEERED PROTEIN. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR366. | | Descriptor: | Engineered Protein OR366 | | Authors: | Vorobiev, S., Parmeggiani, F., Dimaio, F., Seetharaman, J., Sahdev, S., Xiao, R., Kogan, S., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG) | | Deposit date: | 2014-12-23 | | Release date: | 2015-01-07 | | Last modified: | 2015-03-04 | | Method: | X-RAY DIFFRACTION (2.804 Å) | | Cite: | Crystal Structure of Engineered Protein OR366
To be Published
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6NUK | | DE NOVO DESIGNED PROTEIN FERREDOG-DIESEL | | Descriptor: | Ferredog-Diesel | | Authors: | Koepnick, B., Bick, M.J., DiMaio, F., Norgard-Solano, T., Baker, D. | | Deposit date: | 2019-02-01 | | Release date: | 2019-06-12 | | Last modified: | 2019-11-20 | | Method: | X-RAY DIFFRACTION (1.92 Å) | | Cite: | De novo protein design by citizen scientists.
Nature, 570, 2019
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2XYY | | DE NOVO MODEL OF BACTERIOPHAGE P22 PROCAPSID COAT PROTEIN | | Descriptor: | COAT PROTEIN | | Authors: | Chen, D.-H., Baker, M.L., Hryc, C.F., DiMaio, F., Jakana, J., Wu, W., Dougherty, M., Haase-Pettingell, C., Schmid, M.F., Jiang, W., Baker, D., King, J.A., Chiu, W. | | Deposit date: | 2010-11-19 | | Release date: | 2011-02-02 | | Last modified: | 2018-10-03 | | Method: | ELECTRON MICROSCOPY (3.8 Å) | | Cite: | Structural Basis for Scaffolding-Mediated Assembly and Maturation of a DsDNA Virus.
Proc.Natl.Acad.Sci.USA, 108, 2011
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2XYZ | | DE NOVO MODEL OF BACTERIOPHAGE P22 VIRION COAT PROTEIN | | Descriptor: | COAT PROTEIN | | Authors: | Chen, D.-H., Baker, M.L., Hryc, C.F., DiMaio, F., Jakana, J., Wu, W., Dougherty, M., Haase-Pettingell, C., Schmid, M.F., Jiang, W., Baker, D., King, J.A., Chiu, W. | | Deposit date: | 2010-11-19 | | Release date: | 2011-02-02 | | Last modified: | 2018-10-03 | | Method: | ELECTRON MICROSCOPY (4 Å) | | Cite: | Structural Basis for Scaffolding-Mediated Assembly and Maturation of a DsDNA Virus.
Proc.Natl.Acad.Sci.USA, 108, 2011
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3J02 | | LIDLESS D386A MM-CPN IN THE PRE-HYDROLYSIS ATP-BOUND STATE | | Descriptor: | Lidless D386A Mm-cpn variant | | Authors: | Zhang, J., Ma, B., DiMaio, F., Douglas, N.R., Joachimiak, L., Baker, D., Frydman, J., Levitt, M., Chiu, W. | | Deposit date: | 2011-02-10 | | Release date: | 2011-05-18 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (8 Å) | | Cite: | Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure.
Structure, 19, 2011
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3J03 | | LIDLESS MM-CPN IN THE CLOSED STATE WITH ATP/ALFX | | Descriptor: | Lidless Mm-cpn | | Authors: | Zhang, J., Ma, B., DiMaio, F., Douglas, N.R., Joachimiak, L., Baker, D., Frydman, J., Levitt, M., Chiu, W. | | Deposit date: | 2011-02-10 | | Release date: | 2011-05-18 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (4.8 Å) | | Cite: | Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure.
Structure, 19, 2011
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3J83 | |
3J89 | | STRUCTURAL PLASTICITY OF HELICAL NANOTUBES BASED ON COILED-COIL ASSEMBLIES | | Descriptor: | synthetic peptide | | Authors: | Egelman, E.H., Xu, C., DiMaio, F., Magnotti, E., Modlin, C., Yu, X., Wright, E., Baker, D., Conticello, V.P. | | Deposit date: | 2014-10-07 | | Release date: | 2015-02-11 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (3.6 Å) | | Cite: | Structural plasticity of helical nanotubes based on coiled-coil assemblies.
Structure, 23, 2015
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3J9G | | ATOMIC MODEL OF THE VIPA/VIPB, THE TYPE SIX SECRETION SYSTEM CONTRACTILE SHEATH OF VIBRIO CHOLERAE FROM CRYO-EM | | Descriptor: | VipA, VipB | | Authors: | Kudryashev, M., Wang, R.Y.-R., Brackmann, M., Scherer, S., Maier, T., Baker, D., DiMaio, F., Stahlberg, H., Egelman, E.H., Basler, M. | | Deposit date: | 2015-01-16 | | Release date: | 2015-03-11 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (3.5 Å) | | Cite: | Structure of the Type VI Secretion System Contractile Sheath.
Cell(Cambridge,Mass.), 160, 2015
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3J9J | | STRUCTURE OF THE CAPSAICIN RECEPTOR, TRPV1, DETERMINED BY SINGLE PARTICLE ELECTRON CRYO-MICROSCOPY | | Descriptor: | Transient receptor potential cation channel subfamily V member 1 | | Authors: | Wang, R.Y.-R., Barad, B.A., Fraser, J.S., DiMaio, F. | | Deposit date: | 2015-02-02 | | Release date: | 2015-09-02 | | Last modified: | 2015-10-14 | | Method: | ELECTRON MICROSCOPY (3.275 Å) | | Cite: | EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy.
Nat.Methods, 12, 2015
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3JCL | | CRYO-ELECTRON MICROSCOPY STRUCTURE OF A CORONAVIRUS SPIKE GLYCOPROTEIN TRIMER | | Descriptor: | Spike glycoprotein | | Authors: | Walls, A.C., Tortorici, M.A., Bosch, B.J., Frenz, B., Rottier, P.J.M., DiMaio, F., Rey, F.A., Veesler, D. | | Deposit date: | 2015-12-21 | | Release date: | 2016-02-03 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (4 Å) | | Cite: | Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer.
Nature, 531, 2016
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3NNG | | CRYSTAL STRUCTURE OF THE F5/8 TYPE C DOMAIN OF Q5LFR2_BACFN PROTEIN FROM BACTEROIDES FRAGILIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BFR258E | | Descriptor: | uncharacterized protein, CALCIUM ION | | Authors: | Vorobiev, S., Su, M., Dimaio, F., Baker, D., Seetharaman, J., Janjua, J., Xiao, R., Ciccosanti, C., Foote, E.L., Lee, D., Everett, J.K., Nair, R., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG) | | Deposit date: | 2010-06-23 | | Release date: | 2010-08-18 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.177 Å) | | Cite: | Crystal structure of the F5/8 type C domain of Q5LFR2_BACFN protein from Bacteroides fragilis.
To be Published
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4EQF | | TRIP8B-1A#206-567 INTERACTING WITH THE CARBOXY-TERMINAL SEVEN RESIDUES OF HCN2 | | Descriptor: | PEX5-related protein, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 | | Authors: | Bankston, J.R., Camp, S.S., Dimaio, F., Lewis, A.S., Chetkovich, D.M., Zagotta, W.N. | | Deposit date: | 2012-04-18 | | Release date: | 2012-05-30 | | Method: | X-RAY DIFFRACTION (3 Å) | | Cite: | Structure and stoichiometry of an accessory subunit TRIP8b interaction with hyperpolarization-activated cyclic nucleotide-gated channels.
Proc.Natl.Acad.Sci.USA, 109, 2012
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4TQL | | COMPUTATIONALLY DESIGNED THREE HELIX BUNDLE | | Descriptor: | Three helix bundle | | Authors: | Nannenga, B.L., Oberdorfer, G., DiMaio, F., Baker, D., Gonen, T. | | Deposit date: | 2014-06-11 | | Release date: | 2014-10-15 | | Last modified: | 2017-09-06 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | High thermodynamic stability of parametrically designed helical bundles.
Science, 346, 2014
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5EC0 | | CRYSTAL STRUCTURE OF ACTIN-LIKE PROTEIN ALP7A | | Descriptor: | Alp7A, GLYCEROL, ADENOSINE-5'-DIPHOSPHATE, ... | | Authors: | Petek, N.A., Kraemer, J.A., Mullins, R.D., Agard, D.A., DiMaio, F., Baker, D. | | Deposit date: | 2015-10-20 | | Release date: | 2016-11-02 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Structure and function of Alp7A reveal both conserved and unique features of plasmid segregation.
To Be Published
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5FLU | | STRUCTURE OF A CHAPERONE-USHER PILUS REVEALS THE MOLECULAR BASIS OF ROD UNCOILIN | | Descriptor: | PAP FIMBRIAL MAJOR PILIN PROTEIN | | Authors: | Hospenthal, M.K., Redzej, A., Dodson, K., Ukleja, M., Frenz, B., Hultgren, S.J., DiMaio, F., Egelman, E.H., Waksman, G. | | Deposit date: | 2015-10-28 | | Release date: | 2016-01-13 | | Last modified: | 2019-10-23 | | Method: | ELECTRON MICROSCOPY (3.8 Å) | | Cite: | Structure of a Chaperone-Usher Pilus Reveals the Molecular Basis of Rod Uncoiling.
Cell(Cambridge,Mass.), 164, 2016
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5J0H | | DE NOVO DESIGN OF PROTEIN HOMO-OLIGOMERS WITH MODULAR HYDROGEN BOND NETWORK-MEDIATED SPECIFICITY | | Descriptor: | Design construct 2L6HC3_13 | | Authors: | Sankaran, B., Zwart, P.H., Pereira, J.H., Baker, D., Boyken, S., Chen, Z., Groves, B., Langan, R.A., Oberdorfer, G., Ford, A., Gilmore, J., Xu, C., DiMaio, F., Seelig, G. | | Deposit date: | 2016-03-28 | | Release date: | 2016-05-25 | | Last modified: | 2019-11-20 | | Method: | X-RAY DIFFRACTION (1.64 Å) | | Cite: | De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity.
Science, 352, 2016
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5J0I | | DE NOVO DESIGN OF PROTEIN HOMO-OLIGOMERS WITH MODULAR HYDROGEN BOND NETWORK-MEDIATED SPECIFICITY | | Descriptor: | Designed protein 2L6HC3_12 | | Authors: | Sankaran, B., Zwart, P.H., Pereira, J.H., Baker, D., Boyken, S., Chen, Z., Groves, B., Langan, R.A., Oberdorfer, G., Ford, A., Gilmore, J., Xu, C., DiMaio, F., Seelig, G. | | Deposit date: | 2016-03-28 | | Release date: | 2016-05-25 | | Last modified: | 2017-11-01 | | Method: | X-RAY DIFFRACTION (2.202 Å) | | Cite: | De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity.
Science, 352, 2016
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5J0J | | DE NOVO DESIGN OF PROTEIN HOMO-OLIGOMERS WITH MODULAR HYDROGEN BOND NETWORK-MEDIATED SPECIFICITY | | Descriptor: | designed protein 2L6HC3_6 | | Authors: | Sankaran, B., Zwart, P.H., Pereira, J.H., Baker, D., Boyken, S., Chen, Z., Groves, B., Langan, R.A., Oberdorfer, G., Ford, A., Gilmore, J., Xu, C., DiMaio, F., Seelig, G. | | Deposit date: | 2016-03-28 | | Release date: | 2016-05-25 | | Method: | X-RAY DIFFRACTION (2.256 Å) | | Cite: | De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity.
Science, 352, 2016
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5J0K | | DE NOVO DESIGN OF PROTEIN HOMO-OLIGOMERS WITH MODULAR HYDROGEN BOND NETWORK-MEDIATED SPECIFICITY | | Descriptor: | designed protein 2L4HC2_23 | | Authors: | Sankaran, B., Zwart, P.H., Pereira, J.H., Baker, D., Boyken, S., Chen, Z., Groves, B., Langan, R.A., Oberdorfer, G., Ford, A., Gilmore, J., Xu, C., DiMaio, F., Seelig, G. | | Deposit date: | 2016-03-28 | | Release date: | 2016-05-25 | | Last modified: | 2017-11-01 | | Method: | X-RAY DIFFRACTION (1.54 Å) | | Cite: | De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity.
Science, 352, 2016
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