Author results

5KAF
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RT XFEL STRUCTURE OF PHOTOSYSTEM II IN THE DARK STATE AT 3.0 A RESOLUTION
Descriptor:Photosystem II protein D1 1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Young, I.D., Ibrahim, M., Chatterjee, R., Gul, S., Koroidov, S., Brewster, A.S., Tran, R., Alonso-Mori, R., Fuller, F., Kroll, T., Michels-Clark, T., Laksmono, H., Sierra, R.G., Stan, C.A., Saracini, C., Bean, M.A., Seuffert, I., Sokaras, D., Weng, T.-C., Hunter, M.S., Aquila, A., Koglin, J.E., Robinson, J., Liang, M., Boutet, S., Lyubimov, A.Y., Uervirojnangkoorn, M., Moriarty, N.W., Liebschner, D., Afonine, P.V., Waterman, D.G., Evans, G., Dobbek, H., Weis, W.I., Brunger, A.T., Zwart, P.H., Adams, P.D., Zouni, A., Messinger, J., Bergmann, U., Sauter, N.K., Kern, J., Yachandra, V.K., Yano, J.
Deposit date:2016-06-01
Release date:2016-11-23
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (3.00001 Å)
Cite:Structure of photosystem II and substrate binding at room temperature.
Nature, 540, 2016
5KAI
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NH3-BOUND RT XFEL STRUCTURE OF PHOTOSYSTEM II 500 MS AFTER THE 2ND ILLUMINATION (2F) AT 2.8 A RESOLUTION
Descriptor:Photosystem II protein D1 1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Young, I.D., Ibrahim, M., Chatterjee, R., Gul, S., Koroidov, S., Brewster, A.S., Tran, R., Alonso-Mori, R., Fuller, F., Kroll, T., Michels-Clark, T., Laksmono, H., Sierra, R.G., Stan, C.A., Saracini, C., Bean, M.A., Seuffert, I., Sokaras, D., Weng, T.-C., Hunter, M.S., Aquila, A., Koglin, J.E., Robinson, J., Liang, M., Boutet, S., Lyubimov, A.Y., Uervirojnangkoorn, M., Moriarty, N.W., Liebschner, D., Afonine, P.V., Waterman, D.G., Evans, G., Dobbek, H., Weis, W.I., Brunger, A.T., Zwart, P.H., Adams, P.D., Zouni, A., Messinger, J., Bergmann, U., Sauter, N.K., Kern, J., Yachandra, V.K., Yano, J.
Deposit date:2016-06-01
Release date:2016-11-23
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.800009 Å)
Cite:Structure of photosystem II and substrate binding at room temperature.
Nature, 540, 2016
5TIS
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ROOM TEMPERATURE XFEL STRUCTURE OF THE NATIVE, DOUBLY-ILLUMINATED PHOTOSYSTEM II COMPLEX
Descriptor:Photosystem II protein D1 1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Young, I.D., Ibrahim, M., Chatterjee, R., Gul, S., Fuller, F., Koroidov, S., Brewster, A.S., Tran, R., Alonso-Mori, R., Kroll, T., Michels-Clark, T., Laksmono, H., Sierra, R.G., Stan, C.A., Hussein, R., Zhang, M., Douthit, L., Kubin, M., de Lichtenberg, C., Pham, L.V., Nilsson, H., Cheah, M.H., Shevela, D., Saracini, C., Bean, M.A., Seuffert, I., Sokaras, D., Weng, T.-C., Pastor, E., Weninger, C., Fransson, T., Lassalle, L., Braeuer, P., Aller, P., Docker, P.T., Andi, B., Orville, A.M., Glownia, J.M., Nelson, S., Sikorski, M., Zhu, D., Hunter, M.S., Aquila, A., Koglin, J.E., Robinson, J., Liang, M., Boutet, S., Lyubimov, A.Y., Uervirojnangkoorn, M., Moriarty, N.W., Liebschner, D., Afonine, P.V., Watermann, D.G., Evans, G., Wernet, P., Dobbek, H., Weis, W.I., Brunger, A.T., Zwart, P.H., Adams, P.D., Zouni, A., Messinger, J., Bergmann, U., Sauter, N.K., Kern, J., Yachandra, V.K., Yano, J.
Deposit date:2016-10-03
Release date:2016-11-23
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.250004 Å)
Cite:Structure of photosystem II and substrate binding at room temperature.
Nature, 540, 2016
3J40
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VALIDATED NEAR-ATOMIC RESOLUTION STRUCTURE OF BACTERIOPHAGE EPSILON15 DERIVED FROM CRYO-EM AND MODELING
Descriptor:gp10, gp7
Authors:Baker, M.L., Hryc, C.F., Zhang, Q., Wu, W., Jakana, J., Haase-Pettingell, C., Afonine, P.V., Adams, P.D., King, J.A., Jiang, W., Chiu, W.
Deposit date:2013-05-30
Release date:2013-07-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling.
Proc.Natl.Acad.Sci.USA, 110, 2013
3J7L
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FULL VIRUS MAP OF BROME MOSAIC VIRUS
Descriptor:Capsid protein
Authors:Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.
Deposit date:2014-07-18
Release date:2014-09-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:An atomic model of brome mosaic virus using direct electron detection and real-space optimization.
Nat Commun, 5, 2014
3J7M
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VIRUS MODEL OF BROME MOSAIC VIRUS (FIRST HALF DATA SET)
Descriptor:Capsid protein
Authors:Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.
Deposit date:2014-07-18
Release date:2014-09-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:An atomic model of brome mosaic virus using direct electron detection and real-space optimization.
Nat Commun, 5, 2014
3J7N
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VIRUS MODEL OF BROME MOSAIC VIRUS (SECOND HALF DATA SET)
Descriptor:Capsid protein
Authors:Wang, Z., Hryc, C., Bammes, B., Afonine, P.V., Jakana, J., Chen, D.H., Liu, X., Baker, M.L., Kao, C., Ludtke, S.J., Schmid, M.F., Adams, P.D., Chiu, W.
Deposit date:2014-07-18
Release date:2014-09-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:An atomic model of brome mosaic virus using direct electron detection and real-space optimization.
Nat Commun, 5, 2014
3OS8
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ESTROGEN RECEPTOR
Descriptor:Estrogen receptor, 4-[1-benzyl-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol
Authors:Bruning, J., Parent, A.A., Gil, G., Zhao, M., Nowak, J., Pace, M.C., Smith, C.L., Afonine, P.V., Adams, P.D., Katzenellenbogen, J.A., Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.031 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
3OS9
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ESTROGEN RECEPTOR
Descriptor:Estrogen receptor, 4-[1-allyl-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol
Authors:Bruning, J., Parent, A.A., Gil, G., Zhao, M., Nowak, J., Pace, M.C., Smith, C.L., Afonine, P.V., Adams, P.D., Katzenellenbogen, J.A., Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
3OSA
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ESTROGEN RECEPTOR
Descriptor:Estrogen receptor, 4-[1-(3-methylbut-2-en-1-yl)-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol
Authors:Bruning, J., Parent, A.A., Gil, G., Zhao, M., Nowak, J., Pace, M.C., Smith, C.L., Afonine, P.V., Adams, P.D., Katzenellenbogen, J.A., Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.296 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
5OF4
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THE CRYO-EM STRUCTURE OF HUMAN TFIIH
Descriptor:TFIIH basal transcription factor complex helicase XPB subunit,XPB,TFIIH basal transcription factor complex helicase XPB subunit, TFIIH basal transcription factor complex helicase XPD subunit, General transcription factor IIH subunit 4,p52,General transcription factor IIH subunit 4, ...
Authors:Greber, B.J., Nguyen, T.H.D., Fang, J., Afonine, P.V., Adams, P.D., Nogales, E.
Deposit date:2017-07-10
Release date:2017-09-13
Last modified:2018-10-17
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:The cryo-electron microscopy structure of human transcription factor IIH.
Nature, 549, 2017
5UU5
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BACTERIOPHAGE P22 MATURE VIRION CAPSID PROTEIN
Descriptor:Major capsid protein
Authors:Hryc, C.F., Chen, D.-H., Afonine, P.V., Jakana, J., Wang, Z., Haase-Pettingell, C., Jiang, W., Adams, P.D., King, J.A., Schmid, M.F., Chiu, W.
Deposit date:2017-02-16
Release date:2017-03-15
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Accurate model annotation of a near-atomic resolution cryo-EM map.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5WNW
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CHAPERONE SPY BOUND TO IM7 6-45 ENSEMBLE
Descriptor:Periplasmic chaperone Spy, Colicin-E7 immunity protein, IMIDAZOLE, ...
Authors:Horowitz, S., Salmon, L., Koldewey, P., Ahlstrom, L.S., Martin, R., Xu, Q., Afonine, P.V., Trievel, R.C., Brooks, C.L., Bardwell, J.C.A.
Deposit date:2017-08-01
Release date:2017-08-16
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Visualizing chaperone-assisted protein folding.
Nat. Struct. Mol. Biol., 23, 2016
6DZ1
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STUDIES OF ION TRANSPORT IN K+ CHANNELS
Descriptor:Potassium channel protein, POTASSIUM ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Langan, P.S., Vandavasi, V.G., Weiss, K.L., Wagner, A., Duman, R., El Omari, K., Afonine, P.V., Coates, L.
Deposit date:2018-07-02
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Anomalous X-ray diffraction studies of ion transport in K+channels.
Nat Commun, 9, 2018
2QXS
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CRYSTAL STRUCTURE OF ANTAGONIZING MUTANT 536S OF THE ESTROGEN RECEPTOR ALPHA LIGAND BINDING DOMAIN COMPLEXED TO RALOXIFENE
Descriptor:Estrogen receptor, RALOXIFENE
Authors:Bruning, J.B., Gil, G., Nowak, J., Katzenellenbogen, J., Nettles, K.W.
Deposit date:2007-08-12
Release date:2008-09-02
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
2QZO
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CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR ALPHA LIGAND BINDING DOMAIN COMPLEXED WITH WAY-169916
Descriptor:Estrogen receptor, Nuclear receptor coactivator 2, 4-[1-allyl-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol
Authors:Bruning, J.B., Gil, G., Nowak, J., Katzenellenbogen, J., Nettles, K.W.
Deposit date:2007-08-16
Release date:2008-08-26
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
4TNH
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RT XFEL STRUCTURE OF PHOTOSYSTEM II IN THE DARK STATE AT 4.9 A RESOLUTION
Descriptor:Photosystem Q(B) protein 1, Photosystem II core light harvesting protein, Photosystem II CP43 protein, ...
Authors:Kern, J., Tran, R., Alonso-Mori, R., Koroidov, S., Echols, N., Hattne, J., Ibrahim, M., Gul, S., Laksmono, H., Sierra, R.G., Gildea, R.J., Han, G., Hellmich, J., Lassalle-Kaiser, B., Chatterjee, R., Brewster, A., Stan, C.A., Gloeckner, C., Lampe, A., DiFiore, D., Milathianaki, D., Fry, A.R., Seibert, M.M., Koglin, J.E., Gallo, E., Uhlig, J., Sokaras, D., Weng, T.-C., Zwart, P.H., Skinner, D.E., Bogan, M.J., Messerschmidt, M., Glatzel, P., Williams, G.J., Boutet, S., Adams, P.D., Zouni, A., Messinger, J., Sauter, N.K., Bergmann, U., Yano, J., Yachandra, V.K.
Deposit date:2014-06-04
Release date:2014-07-09
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (4.900007 Å)
Cite:Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.
Nat Commun, 5, 2014
4TNI
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RT XFEL STRUCTURE OF PHOTOSYSTEM II 500 MS AFTER THE THIRD ILLUMINATION AT 4.6 A RESOLUTION
Descriptor:Photosystem Q(B) protein 1, Photosystem II core light harvesting protein, Photosystem II CP43 protein, ...
Authors:Kern, J., Tran, R., Alonso-Mori, R., Koroidov, S., Echols, N., Hattne, J., Ibrahim, M., Gul, S., Laksmono, H., Sierra, R.G., Gildea, R.J., Han, G., Hellmich, J., Lassalle-Kaiser, B., Chatterjee, R., Brewster, A., Stan, C.A., Gloeckner, C., Lampe, A., DiFiore, D., Milathianaki, D., Fry, A.R., Seibert, M.M., Koglin, J.E., Gallo, E., Uhlig, J., Sokaras, D., Weng, T.-C., Zwart, P.H., Skinner, D.E., Bogan, M.J., Messerschmidt, M., Glatzel, P., Williams, G.J., Boutet, S., Adams, P.D., Zouni, A., Messinger, J., Sauter, N.K., Bergmann, U., Yano, J., Yachandra, V.K.
Deposit date:2014-06-04
Release date:2014-07-09
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (4.6 Å)
Cite:Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.
Nat Commun, 5, 2014
4TNJ
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RT XFEL STRUCTURE OF PHOTOSYSTEM II 500 MS AFTER THE 2ND ILLUMINATION (2F) AT 4.5 A RESOLUTION
Descriptor:Photosystem Q(B) protein 1, Photosystem II core light harvesting protein, Photosystem II CP43 protein, ...
Authors:Kern, J., Tran, R., Alonso-Mori, R., Koroidov, S., Echols, N., Hattne, J., Ibrahim, M., Gul, S., Laksmono, H., Sierra, R.G., Gildea, R.J., Han, G., Hellmich, J., Lassalle-Kaiser, B., Chatterjee, R., Brewster, A., Stan, C.A., Gloeckner, C., Lampe, A., DiFiore, D., Milathianaki, D., Fry, A.R., Seibert, M.M., Koglin, J.E., Gallo, E., Uhlig, J., Sokaras, D., Weng, T.-C., Zwart, P.H., Skinner, D.E., Bogan, M.J., Messerschmidt, M., Glatzel, P., Williams, G.J., Boutet, S., Adams, P.D., Zouni, A., Messinger, J., Sauter, N.K., Bergmann, U., Yano, J., Yachandra, V.K.
Deposit date:2014-06-04
Release date:2014-07-09
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.
Nat Commun, 5, 2014
4TNK
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RT XFEL STRUCTURE OF PHOTOSYSTEM II 250 MICROSEC AFTER THE THIRD ILLUMINATION AT 5.2 A RESOLUTION
Descriptor:Photosystem Q(B) protein 1, Photosystem II core light harvesting protein, Photosystem II CP43 protein, ...
Authors:Kern, J., Tran, R., Alonso-Mori, R., Koroidov, S., Echols, N., Hattne, J., Ibrahim, M., Gul, S., Laksmono, H., Sierra, R.G., Gildea, R.J., Han, G., Hellmich, J., Lassalle-Kaiser, B., Chatterjee, R., Brewster, A., Stan, C.A., Gloeckner, C., Lampe, A., DiFiore, D., Milathianaki, D., Fry, A.R., Seibert, M.M., Koglin, J.E., Gallo, E., Uhlig, J., Sokaras, D., Weng, T.-C., Zwart, P.H., Skinner, D.E., Bogan, M.J., Messerschmidt, M., Glatzel, P., Williams, G.J., Boutet, S., Adams, P.D., Zouni, A., Messinger, J., Sauter, N.K., Bergmann, U., Yano, J., Yachandra, V.K.
Deposit date:2014-06-04
Release date:2014-07-09
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (5.2 Å)
Cite:Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.
Nat Commun, 5, 2014
4TNL
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1.8 A RESOLUTION ROOM TEMPERATURE STRUCTURE OF THERMOLYSIN RECORDED USING AN XFEL
Descriptor:Thermolysin, ZINC ION, CALCIUM ION
Authors:Kern, J., Tran, R., Alonso-Mori, R., Koroidov, S., Echols, N., Hattne, J., Ibrahim, M., Gul, S., Laksmono, H., Sierra, R.G., Gildea, R.J., Han, G., Hellmich, J., Lassalle-Kaiser, B., Chatterjee, R., Brewster, A., Stan, C.A., Gloeckner, C., Lampe, A., DiFiore, D., Milathianaki, D., Fry, A.R., Seibert, M.M., Koglin, J.E., Gallo, E., Uhlig, J., Sokaras, D., Weng, T.-C., Zwart, P.H., Skinner, D.E., Bogan, M.J., Messerschmidt, M., Glatzel, P., Williams, G.J., Boutet, S., Adams, P.D., Zouni, A., Messinger, J., Sauter, N.K., Bergmann, U., Yano, J., Yachandra, V.K.
Deposit date:2014-06-04
Release date:2014-07-09
Last modified:2015-10-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.
Nat Commun, 5, 2014
4YE7
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N-TERMINAL DOMAIN OF ORF22, A CYDIA POMONELLA GRANULOVIRUS ENVELOPE PROTEIN
Descriptor:ORF22 similar to XcGV ORF19, ACETATE ION
Authors:Busby, J.N., Metcalf, P.
Deposit date:2015-02-23
Release date:2016-03-09
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural studies of granulovirus envelope fibres.
To Be Published
5H31
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STRUCTURAL BASIS FOR DIMERIZATION OF THE DEATH EFFECTOR DOMAINS OF CASPASE-8
Descriptor:Caspase-8
Authors:Shen, C., Pei, J., Guo, X., Quan, J.
Deposit date:2016-10-19
Release date:2017-10-25
Method:X-RAY DIFFRACTION (3.169535 Å)
Cite:Structural basis for dimerization of the death effector domains of Caspase-8
To Be Published
5HLL
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RE-REFINEMENT OF 4G4A: ROOM-TEMPERATURE X-RAY DIFFRACTION STUDY OF CISPLATIN AND ITS BINDING TO HIS15 OF HEWL AFTER 14 MONTHS CHEMICAL EXPOSURE IN THE PRESENCE OF DMSO.
Descriptor:Lysozyme C, DIMETHYL SULFOXIDE, CHLORIDE ION, ...
Authors:Helliwell, J.R.
Deposit date:2016-01-15
Release date:2016-03-02
Last modified:2018-08-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Re-refinement of 4g4a: room-temperature X-ray diffraction study of cisplatin and its binding to His15 of HEWL after 14 months chemical exposure in the presence of DMSO.
Acta Crystallogr F Struct Biol Commun, 72, 2016
5I6U
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THE CRYSTAL STRUCTURE OF PI3KDELTA WITH COMPOUND 32
Descriptor:Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform, 2-[(1S)-1-({6-amino-5-[(1H-pyrazol-4-yl)ethynyl]pyrimidin-4-yl}amino)ethyl]-5-chloro-3-phenylquinazolin-4(3H)-one
Authors:Somoza, J.R., Villasenor, A.G.
Deposit date:2016-02-16
Release date:2017-02-22
Method:X-RAY DIFFRACTION (2.842 Å)
Cite:The crystal structure of PI3Kdelta with compound 32
To Be Published
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