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5Y0B
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PIG GASTRIC H+,K+ - ATPASE IN COMPLEX WITH BYK99
Descriptor:Potassium-transporting ATPase alpha chain 1, Potassium-transporting ATPase subunit beta
Authors:Abe, K., Shimokawa, J., Natio, M., Munson, K., Vagin, O., Sachs, G., Suzuki, H., Tani, K., Fujiyoshi, Y.
Deposit date:2017-07-16
Release date:2017-08-09
Method:ELECTRON CRYSTALLOGRAPHY (6.7 Å)
Cite:The cryo-EM structure of gastric H(+),K(+)-ATPase with bound BYK99, a high-affinity member of K(+)-competitive, imidazo[1,2-a]pyridine inhibitors
Sci Rep, 7, 2017
2XZB
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PIG GASTRIC H,K-ATPASE WITH BOUND BEF AND SCH28080
Descriptor:POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1, POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
Authors:Abe, K., Tani, K., Fujiyoshi, Y.
Deposit date:2010-11-24
Release date:2011-01-26
Last modified:2012-04-11
Method:ELECTRON CRYSTALLOGRAPHY (7 Å)
Cite:Conformational Rearrangement of Gastric H(+),K(+)- ATPase Induced by an Acid Suppressant.
Nat.Commun., 2, 2011
2YN9
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CRYO-EM STRUCTURE OF GASTRIC H+,K+-ATPASE WITH BOUND RUBIDIUM
Descriptor:POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1, POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
Authors:Abe, K., Tani, K., Friedrich, T., Fujiyoshi, Y.
Deposit date:2012-10-13
Release date:2012-11-07
Last modified:2014-07-16
Method:ELECTRON CRYSTALLOGRAPHY (8 Å)
Cite:Cryo-Em Structure of Gastric H+,K+-ATPase with a Single Occupied Cation-Binding Site.
Proc.Natl.Acad.Sci.USA, 109, 2012
3IXZ
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PIG GASTRIC H+/K+-ATPASE COMPLEXED WITH ALUMINIUM FLUORIDE
Descriptor:Potassium-transporting ATPase alpha, Potassium-transporting ATPase subunit beta
Authors:Abe, K., Tani, K., Nishizawa, T., Fujiyoshi, Y.
Deposit date:2009-03-09
Release date:2009-06-23
Last modified:2018-07-18
Method:ELECTRON CRYSTALLOGRAPHY (6.5 Å)
Cite:Inter-subunit interaction of gastric H+,K+-ATPase prevents reverse reaction of the transport cycle
Embo J., 28, 2009
4UX1
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CRYO-EM STRUCTURE OF ANTAGONIST-BOUND E2P GASTRIC H,K-ATPASE (SCH.E2. ALF)
Descriptor:POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1, POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
Authors:Abe, K., Tani, K., Fujiyoshi, Y.
Deposit date:2014-08-18
Release date:2014-09-17
Last modified:2014-11-12
Method:ELECTRON CRYSTALLOGRAPHY (8 Å)
Cite:Systematic Comparison of Molecular Conformations of H+,K+-ATPase Reveals an Important Contribution of the A-M2 Linker for the Luminal Gating.
J.Biol.Chem., 289, 2014
4UX2
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CRYO-EM STRUCTURE OF ANTAGONIST-BOUND E2P GASTRIC H,K-ATPASE (SCH.E2. MGF)
Descriptor:POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1, POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
Authors:Abe, K., Tani, K., Fujiyoshi, Y.
Deposit date:2014-08-18
Release date:2014-09-17
Last modified:2014-11-12
Method:ELECTRON CRYSTALLOGRAPHY (7 Å)
Cite:Systematic Comparison of Molecular Conformations of H+,K+-ATPase Reveals an Important Contribution of the A-M2 Linker for the Luminal Gating.
J.Biol.Chem., 289, 2014
5YLU
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CRYSTAL STRUCTURE OF THE GASTRIC PROTON PUMP COMPLEXED WITH VONOPRAZAN
Descriptor:Potassium-transporting ATPase alpha chain 1, Potassium-transporting ATPase subunit beta, 1-[5-(2-fluorophenyl)-1-pyridin-3-ylsulfonyl-pyrrol-3-yl]-~{N}-methyl-methanamine, ...
Authors:Abe, K., Irie, K., Nakanishi, H., Fujiyoshi, Y.
Deposit date:2017-10-19
Release date:2018-04-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.79989 Å)
Cite:Crystal structures of the gastric proton pump
Nature, 556, 2018
5YLV
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CRYSTAL STRUCTURE OF THE GASTRIC PROTON PUMP COMPLEXED WITH SCH28080
Descriptor:Potassium-transporting ATPase alpha chain 1, Potassium-transporting ATPase subunit beta, 2-(2-methyl-8-phenylmethoxy-imidazo[1,2-a]pyridin-3-yl)ethanenitrile, ...
Authors:Abe, K., Irie, K., Nakanishi, H., Fujiyoshi, Y.
Deposit date:2017-10-19
Release date:2018-04-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.799778 Å)
Cite:Crystal structures of the gastric proton pump
Nature, 556, 2018
5YSB
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CRYSTAL STRUCTURE OF BETA-1,2-GLUCOOLIGOSACCHARIDE BINDING PROTEIN IN LIGAND-FREE FORM
Descriptor:Lin1841 protein, ZINC ION, DI(HYDROXYETHYL)ETHER
Authors:Abe, K., Nakajima, M., Taguchi, H., Arakawa, T., Fushinobu, S.
Deposit date:2017-11-13
Release date:2018-05-02
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua.
J. Biol. Chem., 293, 2018
5YSD
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CRYSTAL STRUCTURE OF BETA-1,2-GLUCOOLIGOSACCHARIDE BINDING PROTEIN IN COMPLEX WITH SOPHOROTRIOSE
Descriptor:Lin1841 protein, (4S)-2-METHYL-2,4-PENTANEDIOL, MAGNESIUM ION, ...
Authors:Abe, K., Nakajima, M., Taguchi, H., Arakawa, T., Fushinobu, S.
Deposit date:2017-11-14
Release date:2018-05-02
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua.
J. Biol. Chem., 293, 2018
5YSE
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CRYSTAL STRUCTURE OF BETA-1,2-GLUCOOLIGOSACCHARIDE BINDING PROTEIN IN COMPLEX WITH SOPHOROTETRAOSE
Descriptor:Lin1841 protein, (4S)-2-METHYL-2,4-PENTANEDIOL, MAGNESIUM ION, ...
Authors:Abe, K., Nakajima, M., Taguchi, H., Arakawa, T., Fushinobu, S.
Deposit date:2017-11-14
Release date:2018-05-02
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua.
J. Biol. Chem., 293, 2018
5YSF
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CRYSTAL STRUCTURE OF BETA-1,2-GLUCOOLIGOSACCHARIDE BINDING PROTEIN IN COMPLEX WITH SOPHOROPENTAOSE
Descriptor:Lin1841 protein, (4S)-2-METHYL-2,4-PENTANEDIOL, MAGNESIUM ION, ...
Authors:Abe, K., Nakajima, M., Taguchi, H., Arakawa, T., Fushinobu, S.
Deposit date:2017-11-14
Release date:2018-05-02
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua.
J. Biol. Chem., 293, 2018
5GZH
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ENDO-BETA-1,2-GLUCANASE FROM CHITINOPHAGA PINENSIS - LIGAND FREE FORM
Descriptor:Endo-beta-1,2-glucanase, TREHALOSE, IODIDE ION
Authors:Abe, K., Nakajima, M., Arakawa, T., Fushinobu, S., Taguchi, H.
Deposit date:2016-09-28
Release date:2017-03-15
Last modified:2017-05-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Biochemical and structural analyses of a bacterial endo-beta-1,2-glucanase reveal a new glycoside hydrolase family
J. Biol. Chem., 292, 2017
5GZK
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ENDO-BETA-1,2-GLUCANASE FROM CHITINOPHAGA PINENSIS - SOPHOROTRIOSE AND GLUCOSE COMPLEX
Descriptor:Uncharacterized protein, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Abe, K., Nakajima, M., Arakawa, T., Fushinobu, S., Taguchi, H.
Deposit date:2016-09-28
Release date:2017-03-15
Last modified:2017-05-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Biochemical and structural analyses of a bacterial endo-beta-1,2-glucanase reveal a new glycoside hydrolase family
J. Biol. Chem., 292, 2017
1EQK
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SOLUTION STRUCTURE OF ORYZACYSTATIN-I, A CYSTEINE PROTEINASE INHIBITOR OF THE RICE, ORYZA SATIVA L. JAPONICA
Descriptor:ORYZACYSTATIN-I
Authors:Nagata, K., Kudo, N., Abe, K., Arai, S., Tanokura, M.
Deposit date:2000-04-05
Release date:2001-01-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of oryzacystatin-I, a cysteine proteinase inhibitor of the rice, Oryza sativa L. japonica.
Biochemistry, 39, 2000
2D04
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CRYSTAL STRUCTURE OF NEOCULIN, A SWEET PROTEIN WITH TASTE-MODIFYING ACTIVITY.
Descriptor:neoculin acidic subunit, Curculin, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Shimizu-Ibuka, A., Morita, Y., Terada, T., Asakura, T., Nakajima, K., Iwata, S., Misaka, T., Sorimachi, H., Arai, S., Abe, K.
Deposit date:2005-07-25
Release date:2006-06-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Crystal structure of neoculin: insights into its sweetness and taste-modifying activity
J.Mol.Biol., 359, 2006
4ZO6
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CRYSTAL STRUCTURE OF MUTANT (D270A) BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH CELLOBIOSE
Descriptor:Lin1840 protein, BETA-D-GLUCOSE, GLYCEROL, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZO7
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CRYSTAL STRUCTURE OF MUTANT (D270A) BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH GENTIOBIOSE
Descriptor:Lin1840 protein, BETA-D-GLUCOSE, MAGNESIUM ION, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZO8
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CRYSTAL STRUCTURE OF MUTANT (D270A) BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH SOPHOROSE
Descriptor:Lin1840 protein, MAGNESIUM ION, BETA-D-GLUCOSE
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZO9
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CRYSTAL STRUCTURE OF MUTANT (D270A) BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH LAMINARIBIOSE
Descriptor:Lin1840 protein, MAGNESIUM ION, GLYCEROL, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZOA
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH ISOFAGOMINE
Descriptor:Lin1840 protein, 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, MAGNESIUM ION, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZOB
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH GLUCONOLACTONE
Descriptor:Lin1840 protein, (3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-ONE, MAGNESIUM ION, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZOC
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CRYSTAL STRUCTURE OF MUTANT (D270A) BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH SOPHOROTRIOSE
Descriptor:Lin1840 protein, GLYCEROL, MAGNESIUM ION, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZOD
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH GLUCOSE
Descriptor:Lin1840 protein, BETA-D-GLUCOSE, MAGNESIUM ION, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZOE
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM LISTERIA INNOCUA
Descriptor:Lin1840 protein, MAGNESIUM ION, GLYCEROL
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
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