1YLI
 
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3CA8
 | | Crystal structure of Escherichia coli YdcF, an S-adenosyl-L-methionine utilizing enzyme | | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, Protein ydcF, SULFATE ION | | Authors: | Lim, K, Chao, K, Lehmann, C, Herzberg, O, Structure 2 Function Project (S2F) | | Deposit date: | 2008-02-19 | | Release date: | 2008-05-06 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes.
Proteins, 72, 2008
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1M65
 | | YCDX PROTEIN | | Descriptor: | Hypothetical protein ycdX, SODIUM ION, SULFATE ION, ... | | Authors: | Teplyakov, A, Obmolova, G, Khil, P.P, Camerini-Otero, R.D, Gilliland, G.L, Structure 2 Function Project (S2F) | | Deposit date: | 2002-07-12 | | Release date: | 2003-04-22 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (1.57 Å) | | Cite: | Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site
PROTEINS: STRUCT.,FUNCT.,GENET., 51, 2003
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3PB1
 | | Crystal Structure of a Michaelis Complex between Plasminogen Activator Inhibitor-1 and Urokinase-type Plasminogen Activator | | Descriptor: | Plasminogen activator inhibitor 1, Plasminogen activator, urokinase, ... | | Authors: | Lin, Z, Jiang, L, Huang, M, Structure 2 Function Project (S2F) | | Deposit date: | 2010-10-20 | | Release date: | 2010-12-29 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structural basis for recognition of urokinase-type plasminogen activator by plasminogen activator inhibitor-1.
J.Biol.Chem., 286, 2011
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4K2A
 | | Crystal structure of haloalkane dehalogenase DbeA from Bradyrhizobium elkani USDA94 | | Descriptor: | ACETATE ION, CHLORIDE ION, Haloalkane dehalogenase | | Authors: | Prudnikova, T, Chaloupkova, R, Rezacova, P, Mozga, T, Koudelakova, T, Sato, Y, Kuty, M, Nagata, Y, Damborsky, J, Kuta Smatanova, I, Structure 2 Function Project (S2F) | | Deposit date: | 2013-04-08 | | Release date: | 2014-06-25 | | Last modified: | 2024-02-28 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Structural and functional analysis of a novel haloalkane dehalogenase with two halide-binding sites.
Acta Crystallogr.,Sect.D, 70, 2014
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1FL9
 | | THE YJEE PROTEIN | | Descriptor: | HYPOTHETICAL PROTEIN HI0065, MERCURY (II) ION | | Authors: | Teplyakov, A, Gilliland, G.L, Structure 2 Function Project (S2F) | | Deposit date: | 2000-08-13 | | Release date: | 2002-08-07 | | Last modified: | 2024-02-07 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Crystal structure of the YjeE protein from Haemophilus influenzae: a putative Atpase involved in cell wall synthesis
Proteins, 48, 2002
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1DBX
 | | Crystal structure of cysteinyl-tRNA(Pro) deacylase from H. influenzae (HI1434) | | Descriptor: | cysteinyl-tRNA(Pro) deacylase | | Authors: | Zhang, H, Huang, K, Li, Z, Herzberg, O, Structure 2 Function Project (S2F) | | Deposit date: | 1999-11-03 | | Release date: | 2000-06-14 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications.
Proteins, 40, 2000
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1DBU
 | | Crystal structure of cysteinyl-tRNA(Pro) deacylase protein from H. influenzae (HI1434) | | Descriptor: | MERCURY (II) ION, cysteinyl-tRNA(Pro) deacylase | | Authors: | Zhang, H, Huang, K, Li, Z, Herzberg, O, Structure 2 Function Project (S2F) | | Deposit date: | 1999-11-03 | | Release date: | 2000-06-14 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications.
Proteins, 40, 2000
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1R8G
 | | Structure and function of YbdK | | Descriptor: | Hypothetical protein ybdK | | Authors: | Lehmann, C, Doseeva, V, Pullalarevu, S, Krajewski, W, Howard, A, Herzberg, O, Structure 2 Function Project (S2F) | | Deposit date: | 2003-10-24 | | Release date: | 2004-08-17 | | Last modified: | 2021-07-28 | | Method: | X-RAY DIFFRACTION (2.15 Å) | | Cite: | YbdK is a carboxylate-amine ligase with a gamma-glutamyl:Cysteine ligase activity: crystal structure and enzymatic assays
PROTEINS: STRUCT.,FUNCT.,GENET., 56, 2004
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1RW1
 | | YFFB (PA3664) PROTEIN | | Descriptor: | ISOPROPYL ALCOHOL, conserved hypothetical protein yffB | | Authors: | Teplyakov, A, Pullalarevu, S, Obmolova, G, Doseeva, V, Galkin, A, Herzberg, O, Dauter, M, Dauter, Z, Gilliland, G.L, Structure 2 Function Project (S2F) | | Deposit date: | 2003-12-15 | | Release date: | 2004-11-02 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.02 Å) | | Cite: | Crystal structure of the YffB protein from Pseudomonas aeruginosa suggests a glutathione-dependent thiol reductase function.
Bmc Struct.Biol., 4, 2004
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3BJK
 | | Crystal structure of HI0827, a hexameric broad specificity acyl-coenzyme A thioesterase: The Asp44Ala mutant enzyme | | Descriptor: | 1,2-ETHANEDIOL, Acyl-CoA thioester hydrolase HI0827, CITRIC ACID | | Authors: | Willis, M.A, Herzberg, O, Structure 2 Function Project (S2F) | | Deposit date: | 2007-12-04 | | Release date: | 2008-02-26 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structure of YciA from Haemophilus influenzae (HI0827), a Hexameric Broad Specificity Acyl-Coenzyme A Thioesterase.
Biochemistry, 47, 2008
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1NMP
 | | Structural genomics, ybgI protein, unknown function | | Descriptor: | Hypothetical protein ybgI, MAGNESIUM ION | | Authors: | Ladner, J.E, Obmolova, G, Teplyakov, A, Khil, P.P, Camerini-Otero, R.D, Gilliland, G.L, Structure 2 Function Project (S2F) | | Deposit date: | 2003-01-10 | | Release date: | 2004-01-20 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Crystal Structure of Escherichia coli Protein ybgI, a toroidal structure with a dinuclear metal site
BMC Struct.Biol., 3, 2003
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1XAX
 | | NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae | | Descriptor: | Hypothetical UPF0054 protein HI0004 | | Authors: | Yeh, D.C, Parsons, J.F, Parsons, L.M, Liu, F, Eisenstein, E, Orban, J, Structure 2 Function Project (S2F) | | Deposit date: | 2004-08-26 | | Release date: | 2005-01-18 | | Last modified: | 2022-03-02 | | Method: | SOLUTION NMR | | Cite: | NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae, and comparison with the X-ray structure of an Aquifex aeolicus homolog
Protein Sci., 14, 2005
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1X6J
 | | Crystal structure of ygfY from Escherichia coli | | Descriptor: | Hypothetical protein ygfY | | Authors: | Lim, K, Doseeva, V, Sarikaya Demirkan, E, Pullalarevu, S, Krajewski, W, Galkin, A, Howard, A, Herzberg, O, Structure 2 Function Project (S2F) | | Deposit date: | 2004-08-11 | | Release date: | 2005-02-08 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Crystal structure of the YgfY from Escherichia coli, a protein that may be involved in transcriptional regulation
Proteins, 58, 2005
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1RXX
 | | Structure of arginine deiminase | | Descriptor: | Arginine deiminase | | Authors: | Galkin, A, Kulakova, L, Sarikaya, E, Lim, K, Howard, A, Herzberg, O, Structure 2 Function Project (S2F) | | Deposit date: | 2003-12-18 | | Release date: | 2004-01-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.45 Å) | | Cite: | Structural insight into arginine degradation by arginine deiminase, an antibacterial and parasite drug target.
J.Biol.Chem., 279, 2004
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1NMO
 | | Structural genomics, protein ybgI, unknown function | | Descriptor: | FE (III) ION, Hypothetical protein ybgI | | Authors: | Ladner, J.E, Obmolova, G, Teplyakov, A, Khil, P.P, Camerini-Otero, R.D, Gilliland, G.L, Structure 2 Function Project (S2F) | | Deposit date: | 2003-01-10 | | Release date: | 2004-01-20 | | Last modified: | 2017-10-11 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Crystal Structure of Escherichia coli Protein ybgI, a toroidal structure with a dinuclear metal site
BMC Struct.Biol., 3, 2003
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1X6I
 | | Crystal structure of ygfY from Escherichia coli | | Descriptor: | Hypothetical protein ygfY | | Authors: | Lim, K, Doseeva, V, Sarikaya Demirkan, E, Pullalarevu, S, Krajewski, W, Galkin, A, Howard, A, Herzberg, O, Structure 2 Function Project (S2F) | | Deposit date: | 2004-08-11 | | Release date: | 2005-02-08 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (1.2 Å) | | Cite: | Crystal structure of the YgfY from Escherichia coli, a protein that may be involved in transcriptional regulation
Proteins, 58, 2005
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2OUT
 | | Solution Structure of HI1506, a Novel Two Domain Protein from Haemophilus influenzae | | Descriptor: | Mu-like prophage FluMu protein gp35, Protein HI1507 in Mu-like prophage FluMu region | | Authors: | Sari, N, He, Y, Doseeva, V, Surabian, K, Schwarz, F, Herzberg, O, Orban, J, Structure 2 Function Project (S2F) | | Deposit date: | 2007-02-12 | | Release date: | 2007-05-01 | | Last modified: | 2022-03-16 | | Method: | SOLUTION NMR | | Cite: | Solution structure of HI1506, a novel two-domain protein from Haemophilus influenzae.
Protein Sci., 16, 2007
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1NO5
 | | Structure of HI0073 from Haemophilus influenzae, the nucleotide binding domain of the HI0073/HI0074 two protein nucleotidyl transferase. | | Descriptor: | GLYCEROL, Hypothetical protein HI0073, SODIUM ION, ... | | Authors: | Lehmann, C, Pullalarevu, S, Galkin, A, Krajewski, W, Willis, M.A, Howard, A, Herzberg, O, Structure 2 Function Project (S2F) | | Deposit date: | 2003-01-15 | | Release date: | 2004-03-16 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Structure of HI0073 from Haemophilus influenzae, the nucleotide-binding domain of a two-protein nucleotidyl transferase
Proteins, 60, 2005
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1J8B
 | | Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function | | Descriptor: | YbaB | | Authors: | Lim, K, Tempcyzk, A, Toedt, J, Parsons, J.F, Howard, A, Eisenstein, E, Herzberg, O, Structure 2 Function Project (S2F) | | Deposit date: | 2001-05-21 | | Release date: | 2003-01-14 | | Last modified: | 2012-09-26 | | Method: | X-RAY DIFFRACTION (1.75 Å) | | Cite: | Crystal structure of YbaB from Haemophilus influenzae (HI0442), a
protein of unknown function coexpressed with the recombinational
DNA repair protein RecR
Proteins, 50, 2003
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1IN0
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1NU0
 | | Structure of the double mutant (L6M; F134M, SeMet form) of yqgF from Escherichia coli, a hypothetical protein | | Descriptor: | Hypothetical protein yqgF, SULFATE ION | | Authors: | Galkin, A, Sarikaya, E, Krajewski, W, Howard, A, Herzberg, O, Structure 2 Function Project (S2F) | | Deposit date: | 2003-01-30 | | Release date: | 2004-03-02 | | Last modified: | 2021-10-27 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Structure of yqgF from Escherichia coli, a hypothetical protein
To be Published
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1J8D
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1K1E
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1MXI
 | | Structure of YibK from Haemophilus influenzae (HI0766): a Methyltransferase with a Cofactor Bound at a Site Formed by a Knot | | Descriptor: | Hypothetical tRNA/rRNA methyltransferase HI0766, IODIDE ION, S-ADENOSYL-L-HOMOCYSTEINE | | Authors: | Lim, K, Zhang, H, Tempczyk, A, Bonander, N, Toedt, J, Howard, A, Eisenstein, E, Herzberg, O, Structure 2 Function Project (S2F) | | Deposit date: | 2002-10-02 | | Release date: | 2003-02-25 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): a Cofactor Bound at a Site Formed by a Knot
Proteins, 51, 2003
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