Author results

2RUE
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SOLUTION STRUCTURE OF THE A' DOMAIN OF THERMOPHILIC FUNGAL PROTEIN DISULFIDE (OXIDIZED FORM, 303K)
Descriptor:Protein disulfide-isomerase
Authors:Inagaki, K., Satoh, T., Kato, K.
Deposit date:2014-03-27
Release date:2015-05-20
Last modified:2015-08-26
Method:SOLUTION NMR
Cite:Redox-coupled structural changes of the catalytic a' domain of protein disulfide isomerase
Febs Lett., 2015
2RUF
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SOLUTION STRUCTURE OF THE A' DOMAIN OF THERMOPHILIC FUNGAL PROTEIN DISULFIDE (REDUCED FORM, 303K)
Descriptor:Protein disulfide-isomerase
Authors:Inagaki, K., Satoh, T., Kato, K.
Deposit date:2014-03-31
Release date:2015-05-20
Last modified:2015-08-26
Method:SOLUTION NMR
Cite:Redox-coupled structural changes of the catalytic a' domain of protein disulfide isomerase
Febs Lett., 2015
3WT1
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CRYSTAL STRUCTURE OF THE B'-A' DOMAIN OF THERMOPHILIC FUNGAL PROTEIN DISULFIDE ISOMERASE (REDUCED FORM)
Descriptor:Protein disulfide-isomerase, GLYCEROL
Authors:Inagaki, K., Satoh, T., Itoh, S.G., Okumura, H., Kato, K.
Deposit date:2014-04-02
Release date:2014-11-26
Last modified:2014-12-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Redox-dependent conformational transition of catalytic domain of protein disulfide isomerase indicated by crystal structure-based molecular dynamics simulation
Chem.Phys.Lett., 618, 2015
3WT2
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CRYSTAL STRUCTURE OF THE B'-A' DOMAIN OF THERMOPHILIC FUNGAL PROTEIN DISULFIDE ISOMERASE (OXIDIZED FORM)
Descriptor:Protein disulfide-isomerase
Authors:Inagaki, K., Satoh, T., Itoh, S.G., Okumura, H., Kato, K.
Deposit date:2014-04-02
Release date:2014-11-26
Last modified:2014-12-31
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Redox-dependent conformational transition of catalytic domain of protein disulfide isomerase indicated by crystal structure-based molecular dynamics simulation
Chem.Phys.Lett., 618, 2015
1A05
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CRYSTAL STRUCTURE OF THE COMPLEX OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM THIOBACILLUS FERROOXIDANS WITH 3-ISOPROPYLMALATE
Descriptor:3-ISOPROPYLMALATE DEHYDROGENASE, MAGNESIUM ION, 3-ISOPROPYLMALIC ACID
Authors:Imada, K., Inagaki, K., Matsunami, H., Kawaguchi, H., Tanaka, H., Tanaka, N., Namba, K.
Deposit date:1997-12-09
Release date:1998-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of 3-isopropylmalate dehydrogenase in complex with 3-isopropylmalate at 2.0 A resolution: the role of Glu88 in the unique substrate-recognition mechanism.
Structure, 6, 1998
3X0V
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STRUCTURE OF L-LYSINE OXIDASE
Descriptor:L-lysine oxidase, FLAVIN-ADENINE DINUCLEOTIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
Authors:Sano, T., Uchida, Y., Amano, M., Kawaguchi, T., Kondo, H., Inagaki, K., Imada, K.
Deposit date:2014-10-22
Release date:2015-04-08
Last modified:2015-07-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Recombinant expression, molecular characterization and crystal structure of antitumor enzyme, l-lysine alpha-oxidase from Trichoderma viride.
J.Biochem., 157, 2015
1GC0
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CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA
Descriptor:METHIONINE GAMMA-LYASE
Authors:Motoshima, H., Inagaki, K., Kumasaka, T., Furuichi, M., Inoue, H., Tamura, T., Esaki, N., Soda, K., Tanaka, N., Yamamoto, M., Tanaka, H.
Deposit date:2000-07-06
Release date:2002-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the pyridoxal 5'-phosphate dependent L-methionine gamma-lyase from Pseudomonas putida
J.BIOCHEM.(TOKYO), 128, 2000
1GC2
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CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA
Descriptor:METHIONINE GAMMA-LYASE
Authors:Motoshima, H., Inagaki, K., Kumasaka, T., Furuichi, M., Inoue, H., Tamura, T., Esaki, N., Soda, K., Tanaka, N., Yamamoto, M., Tanaka, H.
Deposit date:2000-07-06
Release date:2002-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the pyridoxal 5'-phosphate dependent L-methionine gamma-lyase from Pseudomonas putida
J.BIOCHEM.(TOKYO), 128, 2000
2D4V
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CRYSTAL STRUCTURE OF NAD DEPENDENT ISOCITRATE DEHYDROGENASE FROM ACIDITHIOBACILLUS THIOOXIDANS
Descriptor:isocitrate dehydrogenase, CITRATE ANION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Imada, K., Tamura, T., Namba, K., Inagaki, K.
Deposit date:2005-10-24
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and quantum chemical analysis of NAD+-dependent isocitrate dehydrogenase: hydride transfer and co-factor specificity
Proteins, 70, 2008
2D4W
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CRYSTAL STRUCTURE OF GLYCEROL KINASE FROM CELLULOMONAS SP. NT3060
Descriptor:glycerol kinase, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Imada, K., Tamura, T., Namba, K., Inagaki, K.
Deposit date:2005-10-24
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of glycerol kinase from Cellulomonas sp. NT3060
To be Published
1UKJ
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DETAILED STRUCTURE OF L-METHIONINE-LYASE FROM PSEUDOMONAS PUTIDA
Descriptor:Methionine gamma-lyase, SULFATE ION
Authors:Misaki, S., Takimoto, A., Takakura, T., Yoshioka, T., Yamashita, M., Tamura, T., Tanaka, H., Inagaki, K.
Deposit date:2003-08-24
Release date:2004-10-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Detailed structure of L-Methionine -Lyase from Pseudomonas putida
To be Published
1WS6
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THE STRUCTURE OF THERMUS THERMPHILLUS HB8 HYPOTHETICAL PROTEIN TTHA0928
Descriptor:methyltransferase
Authors:Sasaki, C., Sugiura, I., Sugio, S., Tamura, T., Inagaki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-11-01
Release date:2006-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of thermus thermphillus HB8 hypothetical protein TTHA0928
TO BE PUBLISHED
2E1M
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CRYSTAL STRUCTURE OF L-GLUTAMATE OXIDASE FROM STREPTOMYCES SP. X-119-6
Descriptor:L-glutamate oxidase, PHOSPHATE ION, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Sasaki, C., Kashima, A., Sakaguchi, C., Mizuno, H., Arima, J., Kusakabe, H., Tamura, T., Sugio, S., Inagaki, K.
Deposit date:2006-10-26
Release date:2007-11-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural characterization of l-glutamate oxidase from Streptomyces sp. X-119-6
Febs J., 276, 2009
2O7C
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CRYSTAL STRUCTURE OF L-METHIONINE-LYASE FROM PSEUDOMONAS
Descriptor:Methionine gamma-lyase, SULFATE ION
Authors:Misaki, S., Takimoto, A., Takakura, T., Yoshioka, T., Yamashita, M., Tamura, T., Tanaka, H., Inagaki, K.
Deposit date:2006-12-10
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the antitumour enzyme L-methionine gamma-lyase from Pseudomonas putida at 1.8 A resolution
J.Biochem.(Tokyo), 141, 2007
3VK2
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CRYSTAL STRUCTURE OF L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA C116H MUTANT.
Descriptor:Methionine gamma-lyase, SULFATE ION
Authors:Fukumoto, M., Kudou, D., Murano, S., Shiba, T., Sato, D., Tamura, T., Harada, S., Inagaki, K.
Deposit date:2011-11-07
Release date:2012-09-19
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Role of Amino Acid Residues in the Active Site of LPseudomonas putida.
Biosci.Biotechnol.Biochem., 76, 2012
3VK3
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CRYSTAL STRUCTURE OF L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA C116H MUTANT COMPLEXED WITH L-METHIONINE
Descriptor:Methionine gamma-lyase, METHIONINE
Authors:Fukumoto, M., Kudou, D., Murano, S., Shiba, T., Sato, D., Tamura, T., Harada, S., Inagaki, K.
Deposit date:2011-11-07
Release date:2012-09-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Role of Amino Acid Residues in the Active Site of LPseudomonas putida.
Biosci.Biotechnol.Biochem., 76, 2012
3VK4
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CRYSTAL STRUCTURE OF L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA C116H MUTANT COMPLEXED WITH L-HOMOCYSTEINE
Descriptor:Methionine gamma-lyase, 2-AMINO-4-MERCAPTO-BUTYRIC ACID
Authors:Fukumoto, M., Kudou, D., Murano, S., Shiba, T., Sato, D., Tamura, T., Harada, S., Inagaki, K.
Deposit date:2011-11-07
Release date:2012-09-19
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:The Role of Amino Acid Residues in the Active Site of LPseudomonas putida.
Biosci.Biotechnol.Biochem., 76, 2012
3WEU
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CRYSTAL STRUCTURE OF THE L-LYS EPSILON-OXIDASE FROM MARINOMONAS MEDITERRANEA
Descriptor:L-lysine 6-oxidase, SULFATE ION, 1,4-DIETHYLENE DIOXIDE, ...
Authors:Okazaki, S., Nakano, S., Matsui, D., Akaji, S., Inagaki, K., Asano, Y.
Deposit date:2013-07-12
Release date:2013-09-04
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:X-Ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine {varepsilon}-oxidase from Marinomonas mediterranea
J.Biochem., 154, 2013
3WEV
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CRYSTAL STRUCTURE OF THE SCHIFF BASE INTERMEDIATE OF L-LYS EPSILON-OXIDASE FROM MARINOMONAS MEDITERRANEA WITH L-LYS
Descriptor:L-lysine 6-oxidase, LYSINE, SULFATE ION, ...
Authors:Okazaki, S., Nakano, S., Matsui, D., Akaji, S., Inagaki, K., Asano, Y.
Deposit date:2013-07-12
Release date:2013-09-04
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:X-Ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine {varepsilon}-oxidase from Marinomonas mediterranea
J.Biochem., 154, 2013
5X2V
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CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA METHIONINE GAMMA-LYASE WILD TYPE WITHOUT SULFATE ION
Descriptor:L-methionine gamma-lyase
Authors:Shiba, T., Sato, D., Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X2W
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CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA METHIONINE GAMMA-LYASE WILD TYPE WITH L-METHIONINE INTERMEDIATES
Descriptor:L-methionine gamma-lyase, (2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-(methylsulfanyl)but-2-enoic acid
Authors:Shiba, T., Sato, D., Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X2X
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CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA METHIONINE GAMMA-LYASE WILD TYPE WITH L-HOMOCYSTEINE INTERMEDIATES
Descriptor:L-methionine gamma-lyase, (2E)-2-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}but-2-enoic acid, HYDROSULFURIC ACID
Authors:Shiba, T., Sato, D., Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X2Y
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CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA METHIONINE GAMMA-LYASE C116H MUTANT WITHOUT SULFATE ION
Descriptor:L-methionine gamma-lyase
Authors:Shiba, T., Sato, D., Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X2Z
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CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA METHIONINE GAMMA-LYASE C116H MUTANT WITH L-METHIONINE INTERMEDIATES
Descriptor:L-methionine gamma-lyase, (2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-(methylsulfanyl)but-2-enoic acid
Authors:Shiba, T., Sato, D., Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X30
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CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA METHIONINE GAMMA-LYASE C116H MUTANT WITH L-HOMOCYSTEINE INTERMEDIATES.
Descriptor:L-methionine gamma-lyase, 2-AMINO-4-MERCAPTO-BUTYRIC ACID, (2E)-2-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}but-2-enoic acid, ...
Authors:Shiba, T., Sato, D., Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017