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1FQY
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BU of 1fqy by Molmil
STRUCTURE OF AQUAPORIN-1 AT 3.8 A RESOLUTION BY ELECTRON CRYSTALLOGRAPHY
Descriptor: AQUAPORIN-1
Authors:Murata, K, Mitsuoka, K, Hirai, T, Walz, T, Agre, P, Heymann, J.B, Engel, A, Fujiyoshi, Y.
Deposit date:2000-09-07
Release date:2000-10-18
Last modified:2024-04-17
Method:ELECTRON CRYSTALLOGRAPHY (3.8 Å)
Cite:Structural determinants of water permeation through aquaporin-1.
Nature, 407, 2000
4XTC
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BU of 4xtc by Molmil
Crystal structure of bacterial alginate ABC transporter in complex with alginate pentasaccharide-bound periplasmic protein
Descriptor: AlgM1, AlgM2, AlgQ2, ...
Authors:Kaneko, A, Maruyama, Y, Mizuno, N, Baba, S, Kumasaka, T, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2015-01-23
Release date:2016-03-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate.
J.Biol.Chem., 292, 2017
2XD8
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BU of 2xd8 by Molmil
Capsid structure of the infectious Prochlorococcus Cyanophage P-SSP7
Descriptor: T7-LIKE CAPSID PROTEIN
Authors:Liu, X, Zhang, Q, Murata, K, Baker, M.L, Sullivan, M.B, Fu, C, Dougherty, M, Schmid, M.F, Osburne, M.S, Chisholm, S.W, Chiu, W.
Deposit date:2010-04-30
Release date:2010-06-16
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural Changes in a Marine Podovirus Associated with Release of its Genome Into Prochlorococcus
Nat.Struct.Mol.Biol., 17, 2010
4W7H
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BU of 4w7h by Molmil
Crystal Structure of DEH Reductase A1-R Mutant
Descriptor: Carbonyl reductase
Authors:Takase, R, Mikami, B, Kawai, S, Murata, K, Hashimoto, W.
Deposit date:2014-08-22
Release date:2014-09-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Structure-based Conversion of the Coenzyme Requirement of a Short-chain Dehydrogenase/Reductase Involved in Bacterial Alginate Metabolism.
J.Biol.Chem., 289, 2014
4W7I
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BU of 4w7i by Molmil
Crystal structure of DEH reductase A1-R' mutant
Descriptor: 4-deoxy-L-erythro-5-hexoseulose uronate reductase A1-R'
Authors:Takase, R, Mikami, B, Kawai, S, Murata, K, Hashimoto, W.
Deposit date:2014-08-22
Release date:2014-09-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure-based Conversion of the Coenzyme Requirement of a Short-chain Dehydrogenase/Reductase Involved in Bacterial Alginate Metabolism.
J.Biol.Chem., 289, 2014
4XIG
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BU of 4xig by Molmil
Crystal structure of bacterial alginate ABC transporter determined through humid air and glue-coating method
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, AlgM1, AlgM2, ...
Authors:Kaneko, A, Maruyama, Y, Mizuno, N, Baba, S, Kumasaka, T, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2015-01-07
Release date:2016-01-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.402 Å)
Cite:A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate.
J.Biol.Chem., 292, 2017
6INZ
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BU of 6inz by Molmil
Crystal structure of solute-binding protein complexed with unsaturated hyaluronan disaccharide
Descriptor: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Extracellular solute-binding protein family 1, ...
Authors:Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2018-10-29
Release date:2019-09-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.289 Å)
Cite:Substrate recognition by bacterial solute-binding protein is responsible for import of extracellular hyaluronan and chondroitin sulfate from the animal host.
Biosci.Biotechnol.Biochem., 83, 2019
5XS8
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BU of 5xs8 by Molmil
Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with two sulfate groups at C-4 and C-6 positions of GalNAc
Descriptor: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose, CALCIUM ION, Extracellular solute-binding protein family 1
Authors:Oiki, S, Kamochi, R, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2017-06-12
Release date:2018-01-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.952 Å)
Cite:Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans.
Sci Rep, 7, 2017
5SW1
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BU of 5sw1 by Molmil
Thaumatin Structure at pH 6.0
Descriptor: (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID, Thaumatin I
Authors:Masuda, T, Sano, A, Murata, K, Okubo, K, Suzuki, M, Mikami, B.
Deposit date:2016-08-08
Release date:2017-08-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Thaumatin Structure at pH 6.0
To Be Published
5SW2
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Thaumatin Structure at pH 6.0, orthorhombic type1
Descriptor: GLYCEROL, Thaumatin I
Authors:Masuda, T, Sano, A, Murata, K, Okubo, K, Suzuki, M, Mikami, B.
Deposit date:2016-08-08
Release date:2017-08-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Thaumatin Structure at pH 6.0, orthorhombic type1
To Be Published
4F13
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BU of 4f13 by Molmil
Alginate lyase A1-III Y246F complexed with tetrasaccharide
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, Alginate lyase, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Mikami, B, Ban, M, Suzuki, S, Yoon, H.-J, Miyake, O, Yamasaki, M, Ogura, K, Maruyama, Y, Hashimoto, W, Murata, K.
Deposit date:2012-05-06
Release date:2012-06-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.208 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
4F10
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BU of 4f10 by Molmil
Alginate lyase A1-III H192A complexed with tetrasaccharide
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, Alginate lyase, alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Mikami, B, Ban, M, Suzuki, S, Yoon, H.-J, Miyake, O, Yamasaki, M, Ogura, K, Maruyama, Y, Hashimoto, W, Murata, K.
Deposit date:2012-05-05
Release date:2012-06-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
4E1Y
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BU of 4e1y by Molmil
Alginate lyase A1-III H192A apo form
Descriptor: Alginate lyase
Authors:Mikami, B, Ban, M, Suzuki, S, Yoon, H.-J, Miyake, O, Yamasaki, M, Ogura, K, Maruyama, Y, Hashimoto, W, Murata, K.
Deposit date:2012-03-07
Release date:2012-04-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
1AT9
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BU of 1at9 by Molmil
STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY
Descriptor: BACTERIORHODOPSIN, RETINAL
Authors:Kimura, Y, Vassylyev, D.G, Miyazawa, A, Kidera, A, Matsushima, M, Mitsuoka, K, Murata, K, Hirai, T, Fujiyoshi, Y.
Deposit date:1997-08-20
Release date:1998-09-16
Last modified:2024-06-05
Method:ELECTRON CRYSTALLOGRAPHY (2.8 Å)
Cite:Surface of bacteriorhodopsin revealed by high-resolution electron crystallography.
Nature, 389, 1997
1VAV
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BU of 1vav by Molmil
Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution
Descriptor: Alginate lyase PA1167
Authors:Yamasaki, M, Moriwaki, S, Miyake, O, Hashimoto, W, Murata, K, Mikami, B.
Deposit date:2004-02-19
Release date:2004-05-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7: a novel alginate lyase with a beta-sandwich fold.
J.Biol.Chem., 279, 2004
3IM0
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BU of 3im0 by Molmil
Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0)
Descriptor: VAL-1, beta-D-glucopyranuronic acid
Authors:Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2009-08-08
Release date:2009-10-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
2OKX
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BU of 2okx by Molmil
Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A
Descriptor: CALCIUM ION, GLYCEROL, Rhamnosidase B
Authors:Cui, Z, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-01-17
Release date:2007-11-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Glycoside Hydrolase Family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1
J.Mol.Biol., 374, 2007
3GNE
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BU of 3gne by Molmil
Crystal structure of alginate lyase vAL-1 from Chlorella virus
Descriptor: CITRATE ANION, GLYCEROL, VAL-1
Authors:Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2009-03-17
Release date:2009-10-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
6S2C
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BU of 6s2c by Molmil
Acquired functional capsid structures in metazoan totivirus-like dsRNA virus.
Descriptor: Capsid protein
Authors:Okamoto, K, Larsson, S.D.D, Maia, R.N.C.F, Murata, K, Hajdu, J, Iwasaki, K, Miyazaki, N.
Deposit date:2019-06-20
Release date:2020-04-29
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus.
Structure, 28, 2020
1J1N
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BU of 1j1n by Molmil
Structure Analysis of AlgQ2, A Macromolecule(Alginate)-Binding Periplasmic Protein Of Sphingomonas Sp. A1., Complexed with an Alginate Tetrasaccharide
Descriptor: AlgQ2, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid
Authors:Momma, K, Mikami, B, Mishima, Y, Hashimoto, W, Murata, K.
Deposit date:2002-12-11
Release date:2003-06-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1, complexed with an alginate tetrasaccharide at 1.6-A resolution
J.BIOL.CHEM., 278, 2003
2RGK
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BU of 2rgk by Molmil
Functional annotation of Escherichia coli yihS-encoded protein
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Uncharacterized sugar isomerase yihS
Authors:Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-10-03
Release date:2008-08-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase
J.Mol.Biol., 377, 2008
4MMH
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BU of 4mmh by Molmil
Crystal structure of heparan sulfate lyase HepC from Pedobacter heparinus
Descriptor: CALCIUM ION, Heparinase III protein
Authors:Maruyama, Y, Nakamichi, Y, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2013-09-09
Release date:2014-01-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Pedobacter heparinus Heparin Lyase Hep III with the Active Site in a Deep Cleft
Biochemistry, 53, 2014
4MMI
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BU of 4mmi by Molmil
Crystal structure of heparan sulfate lyase HepC mutant from Pedobacter heparinus
Descriptor: CALCIUM ION, Heparinase III protein
Authors:Maruyama, Y, Nakamichi, Y, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2013-09-09
Release date:2014-01-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of Pedobacter heparinus Heparin Lyase Hep III with the Active Site in a Deep Cleft
Biochemistry, 53, 2014
3K8W
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BU of 3k8w by Molmil
Crysatl structure of a bacterial cell-surface flagellin N20C45
Descriptor: Flagellin homolog
Authors:Maruyama, Y, Momma, M, Hashimoto, W, Murata, K.
Deposit date:2009-10-15
Release date:2010-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of N- and C-terminal regions of flagellin
To be Published
3K3T
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BU of 3k3t by Molmil
E185A mutant of peptidoglycan hydrolase from Sphingomonas sp. A1
Descriptor: Peptidoglycan hydrolase FlgJ, SULFATE ION
Authors:Maruyama, Y, Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2009-10-04
Release date:2010-07-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mutational studies of the peptidoglycan hydrolase FlgJ of Sphingomonas sp. strain A1
J.Basic Microbiol., 50, 2010

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