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6XZC
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BU of 6xzc by Molmil
CryoEM structure of the ring-shaped virulence factor EspB from Mycobacterium tuberculosis
Descriptor: ESX-1 secretion-associated protein EspB
Authors:Piton, J, Pojer, F, Wakatsuki, S, Gati, C, Cole, S.T.
Deposit date:2020-02-03
Release date:2020-06-17
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:High resolution CryoEM structure of the ring-shaped virulence factor EspB fromMycobacterium tuberculosis.
J Struct Biol X, 4, 2020
3M4I
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BU of 3m4i by Molmil
Crystal structure of the second part of the Mycobacterium tuberculosis DNA gyrase reaction core: the TOPRIM domain at 1.95 A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA gyrase subunit B
Authors:Piton, J, Petrella, S, Aubry, A, Mayer, C.
Deposit date:2010-03-11
Release date:2010-09-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural insights into the quinolone resistance mechanism of Mycobacterium tuberculosis DNA gyrase.
Plos One, 5, 2010
6G83
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BU of 6g83 by Molmil
Crystal structure of M. tuberculosis DprE1 in complex with sPBTZ169 (sulfonylPBTZ)
Descriptor: Decaprenylphosphoryl-beta-D-ribose oxidase, FLAVIN-ADENINE DINUCLEOTIDE, [2-(4-cyclohexylsulfonylpiperazin-1-yl)-4-oxidanylidene-6-(trifluoromethyl)-1,3-benzothiazin-8-yl]-oxidanylidene-azanium
Authors:Piton, J, Makarov, V, Cole, S.T.
Deposit date:2018-04-07
Release date:2018-08-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-Based Drug Design and Characterization of Sulfonyl-Piperazine Benzothiazinone Inhibitors of DprE1 from Mycobacterium tuberculosis.
Antimicrob. Agents Chemother., 62, 2018
3IG0
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BU of 3ig0 by Molmil
crystal structure of the second part of the Mycobacterium tuberculosis DNA gyrase reaction core: the TOPRIM domain at 2.1 A resolution
Descriptor: DNA gyrase subunit B
Authors:Piton, J, Aubry, A, Delarue, M, Mayer, C.
Deposit date:2009-07-27
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insights into the quinolone resistance mechanism of Mycobacterium tuberculosis DNA gyrase.
Plos One, 5, 2010
3IFZ
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BU of 3ifz by Molmil
crystal structure of the first part of the Mycobacterium tuberculosis DNA gyrase reaction core: the breakage and reunion domain at 2.7 A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA gyrase subunit A, SODIUM ION
Authors:Piton, J, Aubry, A, Delarue, M, Mayer, C.
Deposit date:2009-07-27
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights into the quinolone resistance mechanism of Mycobacterium tuberculosis DNA gyrase.
Plos One, 5, 2010
4JZT
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BU of 4jzt by Molmil
Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH (E68A mutant) bound to GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, dGTP pyrophosphohydrolase
Authors:Piton, J, Larue, V, Thillier, Y, Dorleans, A, Pellegrini, O, Li de la Sierra-Gallay, I, Vasseur, J.J, Debart, F, Tisne, C, Condon, C.
Deposit date:2013-04-03
Release date:2013-05-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates.
Proc.Natl.Acad.Sci.USA, 110, 2013
4JZV
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BU of 4jzv by Molmil
Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH bound to a non-hydrolysable triphosphorylated dinucleotide RNA (pcp-pGpG) - second guanosine residue in guanosine binding pocket
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, RNA (5'-R(*(GCP)P*G)-3'), ...
Authors:Piton, J, Larue, V, Thillier, Y, Dorleans, A, Pellegrini, O, Li de la Sierra-Gallay, I, Vasseur, J.J, Debart, F, Tisne, C, Condon, C.
Deposit date:2013-04-03
Release date:2013-05-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates.
Proc.Natl.Acad.Sci.USA, 110, 2013
4JZU
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BU of 4jzu by Molmil
Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH bound to a non-hydrolysable triphosphorylated dinucleotide RNA (pcp-pGpG) - first guanosine residue in guanosine binding pocket
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, RNA (5'-R(*(GCP)P*G)-3'), RNA PYROPHOSPHOHYDROLASE
Authors:Piton, J, Larue, V, Thillier, Y, Dorleans, A, Pellegrini, O, Li de la Sierra-Gallay, I, Vasseur, J.J, Debart, F, Tisne, C, Condon, C.
Deposit date:2013-04-03
Release date:2013-05-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates.
Proc.Natl.Acad.Sci.USA, 110, 2013
2Z6I
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BU of 2z6i by Molmil
Crystal Structure of S. pneumoniae Enoyl-Acyl Carrier Protein Reductase (FabK)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, FLAVIN MONONUCLEOTIDE, ...
Authors:Saito, J, Yamada, M, Watanabe, T, Takeuchi, Y.
Deposit date:2007-08-01
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of enoyl-acyl carrier protein reductase (FabK) from Streptococcus pneumoniae reveals the binding mode of an inhibitor.
Protein Sci., 17, 2008
2Z6J
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BU of 2z6j by Molmil
Crystal Structure of S. pneumoniae Enoyl-Acyl Carrier Protein Reductase (FabK) in Complex with an Inhibitor
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(4-(2-((3-(5-(PYRIDIN-2-YLTHIO)THIAZOL-2-YL)UREIDO)METHYL)-1H-IMIDAZOL-4-YL)PHENOXY)ACETIC ACID, CALCIUM ION, ...
Authors:Saito, J, Yamada, M, Watanabe, T, Takeuchi, Y.
Deposit date:2007-08-01
Release date:2008-04-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of enoyl-acyl carrier protein reductase (FabK) from Streptococcus pneumoniae reveals the binding mode of an inhibitor.
Protein Sci., 17, 2008
4JZS
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BU of 4jzs by Molmil
Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH (E68A mutant)
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, dGTP pyrophosphohydrolase
Authors:Piton, J, Larue, V, Thillier, Y, Dorleans, A, Pellegrini, O, Li de la Sierra-Gallay, I, Vasseur, J.J, Debart, F, Tisne, C, Condon, C.
Deposit date:2013-04-03
Release date:2013-05-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates.
Proc.Natl.Acad.Sci.USA, 110, 2013
1QGI
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BU of 1qgi by Molmil
CHITOSANASE FROM BACILLUS CIRCULANS
Descriptor: 2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PROTEIN (CHITOSANASE), SULFATE ION
Authors:Saito, J, Kita, A, Higuchi, Y, Nagata, Y, Ando, A, Miki, K.
Deposit date:1999-04-28
Release date:1999-10-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of chitosanase from Bacillus circulans MH-K1 at 1.6-A resolution and its substrate recognition mechanism.
J.Biol.Chem., 274, 1999
5MQ8
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BU of 5mq8 by Molmil
Crystal structure of Rae1 (YacP) from Bacillus subtilis
Descriptor: GLYCEROL, Uncharacterized protein YacP
Authors:Piton, J, Gilet, L, Pellegrini, O, Leroy, M, Figaro, S, Condon, C.
Deposit date:2016-12-20
Release date:2017-04-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Rae1/YacP, a new endoribonuclease involved in ribosome-dependent mRNA decay in Bacillus subtilis.
EMBO J., 36, 2017
5MQ9
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BU of 5mq9 by Molmil
Crystal structure of Rae1 (YacP) from Bacillus subtilis (W164L mutant)
Descriptor: SULFATE ION, Uncharacterized protein YacP
Authors:Piton, J, Gilet, L, Pellegrini, O, Leroy, M, Figaro, S, Condon, C.
Deposit date:2016-12-20
Release date:2017-04-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.174 Å)
Cite:Rae1/YacP, a new endoribonuclease involved in ribosome-dependent mRNA decay in Bacillus subtilis.
EMBO J., 36, 2017
4XXX
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BU of 4xxx by Molmil
Structure of PE-PPE domains of ESX-1 secreted protein EspB, C2221
Descriptor: CHLORIDE ION, ESX-1 secretion-associated protein EspB, GLYCEROL
Authors:Piton, J, Pojer, F, Korotkov, K.V.
Deposit date:2015-01-30
Release date:2015-02-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of EspB, a secreted substrate of the ESX-1 secretion system of Mycobacterium tuberculosis.
J.Struct.Biol., 191, 2015
3WXC
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BU of 3wxc by Molmil
Crystal Structure of IMP-1 metallo-beta-lactamase complexed with a 3-aminophtalic acid inhibitor
Descriptor: 3-(4-hydroxypiperidin-1-yl)benzene-1,2-dicarboxylic acid, Beta-lactamase, ZINC ION
Authors:Saito, J, Watanabe, T, Yamada, M.
Deposit date:2014-07-29
Release date:2014-10-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray crystallographic analysis of IMP-1 metallo-beta-lactamase complexed with a 3-aminophthalic acid derivative, structure-based drug design, and synthesis of 3,6-disubstituted phthalic acid derivative inhibitors
Bioorg.Med.Chem.Lett., 24, 2014
1WSD
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BU of 1wsd by Molmil
Alkaline M-protease form I crystal structure
Descriptor: CALCIUM ION, M-protease, SULFATE ION
Authors:Shirai, T, Suzuki, A, Yamane, T, Ashida, T, Kobayashi, T, Hitomi, J, Ito, S.
Deposit date:2004-11-05
Release date:2004-11-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism
Protein Eng., 10, 1997
1GWY
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BU of 1gwy by Molmil
Crystal structure of the water-soluble state of the pore-forming cytolysin Sticholysin II
Descriptor: STICHOLYSIN II, SULFATE ION
Authors:Mancheno, J.M, Martin-Benito, J, Martinez-Ripoll, M, Gavilanes, J.G, Hermoso, J.A.
Deposit date:2002-03-26
Release date:2003-06-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal and Electron Microscopy Structures of Sticholysin II Actinoporin Reveal Insights Into the Mechanism of Membrane Pore Formation
Structure, 11, 2003
2XQL
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BU of 2xql by Molmil
Fitting of the H2A-H2B histones in the electron microscopy map of the complex Nucleoplasmin:H2A-H2B histones (1:5).
Descriptor: HISTONE H2A-IV, HISTONE H2B 5
Authors:Ramos, I, Martin-Benito, J, Finn, R, Bretana, L, Aloria, K, Arizmendi, J.M, Ausio, J, Muga, A, Valpuesta, J.M, Prado, A.
Deposit date:2010-09-02
Release date:2010-11-03
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (19.5 Å)
Cite:Nucleoplasmin Binds Histone H2A-H2B Dimers Through its Distal Face.
J.Biol.Chem., 285, 2010
2XVR
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BU of 2xvr by Molmil
Phage T7 empty mature head shell
Descriptor: MAJOR CAPSID PROTEIN 10A
Authors:Ionel, A, Velazquez-Muriel, J.A, Luque, D, Cuervo, A, Caston, J.R, Valpuesta, J.M, Martin-Benito, J, Carrascosa, J.L.
Deposit date:2010-10-28
Release date:2010-12-01
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Molecular Rearrangements Involved in the Capsid Shell Maturation of Bacteriophage T7.
J.Biol.Chem., 286, 2011
6I54
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BU of 6i54 by Molmil
Influenza A nucleoprotein docked into 3D helical structure of the wild type ribonucleoprotein complex obtained using cryoEM. Conformation 2.
Descriptor: Influenza virus nucleoprotein, Nucleoprotein
Authors:Coloma, R, Arranz, R, de la Rosa-Trevin, J.M, Sorzano, C.O.S, Carlero, D, Ortin, J, Martin-Benito, J.
Deposit date:2018-11-12
Release date:2019-11-13
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Structural insights into influenza A virus ribonucleoproteins reveal a processive helical track as transcription mechanism.
Nat Microbiol, 5, 2020
6I85
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BU of 6i85 by Molmil
Influenza A nucleoprotein docked into the 3D helical structure of the wild type ribonucleoprotein complex obtained using cryoEM. Conformation 5.
Descriptor: Influenza A nucleoprotein, Nucleoprotein
Authors:Coloma, R, Arranz, R, de la Rosa-Trevin, J.M, Sorzano, C.O.S, Carlero, D, Ortin, J, Martin-Benito, J.
Deposit date:2018-11-19
Release date:2020-01-29
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (24 Å)
Cite:Structural insights into influenza A virus ribonucleoproteins reveal a processive helical track as transcription mechanism.
Nat Microbiol, 5, 2020
6I7M
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BU of 6i7m by Molmil
Influenza A nucleoprotein docked into 3D helical structure of the wild type ribonucleoprotein complex obtained using cryoEM. Conformation 4.
Descriptor: Nucleoprotein
Authors:Coloma, R, Arranz, R, de la Rosa-Trevin, J.M, Sorzano, C.O.S, Carlero, D, Ortin, J, Martin-Benito, J.
Deposit date:2018-11-16
Release date:2020-02-12
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Structural insights into influenza A virus ribonucleoproteins reveal a processive helical track as transcription mechanism.
Nat Microbiol, 5, 2020
6I7B
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BU of 6i7b by Molmil
Influenza A nucleoprotein docked into 3D helical structure of the wild type ribonucleoprotein complex obtained using cryoEM. Conformation 3.
Descriptor: Nucleoprotein
Authors:Coloma, R, Arranz, R, de la Rosa-Trevin, J.M, Sorzano, C.O.S, Carlero, D, Ortin, J, Martin-Benito, J.
Deposit date:2018-11-16
Release date:2020-02-19
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Structural insights into influenza A virus ribonucleoproteins reveal a processive helical track as transcription mechanism.
Nat Microbiol, 5, 2020
3X3C
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BU of 3x3c by Molmil
Crystal structure of the light-driven sodium pump KR2 in neutral state
Descriptor: OLEIC ACID, RETINAL, Sodium pumping rhodopsin
Authors:Kato, H.E, Inoue, K, Abe-Yoshizumi, R, Kato, Y, Ono, H, Konno, M, Ishizuka, T, Hoque, M.R, Hososhima, S, Kunitomo, H, Ito, J, Yoshizawa, S, Yamashita, K, Takemoto, M, Nishizawa, T, Taniguchi, R, Kogure, K, Maturana, A.D, Iino, Y, Yawo, H, Ishitani, R, Kandori, H, Nureki, O.
Deposit date:2015-01-18
Release date:2015-04-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump
Nature, 521, 2015

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