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1OCP
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BU of 1ocp by Molmil
SOLUTION STRUCTURE OF OCT3 POU-HOMEODOMAIN
Descriptor: OCT-3
Authors:Morita, E.H, Hayashi, F, Shirakawa, M, Kyogoku, Y.
Deposit date:1995-02-21
Release date:1995-09-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the Oct-3 POU-Homeodomain in Solution, as Determined by Triple Resonance Heteronuclear Multidimensional NMR Spectroscopy
Protein Sci., 4, 1995
1ED7
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BU of 1ed7 by Molmil
SOLUTION STRUCTURE OF THE CHITIN-BINDING DOMAIN OF BACILLUS CIRCULANS WL-12 CHITINASE A1
Descriptor: CHITINASE A1
Authors:Ikegami, T, Okada, T, Hashimoto, M, Seino, S, Watanabe, T, Shirakawa, M.
Deposit date:2000-01-27
Release date:2000-05-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the chitin-binding domain of Bacillus circulans WL-12 chitinase A1.
J.Biol.Chem., 275, 2000
3VXV
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BU of 3vxv by Molmil
Crystal structure of methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3'), ...
Authors:Otani, J, Arita, K, Kato, T, Kinoshita, M, Ariyoshi, M, Shirakawa, M.
Deposit date:2012-09-21
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
5Y3T
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BU of 5y3t by Molmil
Crystal structure of hetero-trimeric core of LUBAC: HOIP double-UBA complexed with HOIL-1L UBL and SHARPIN UBL
Descriptor: E3 ubiquitin-protein ligase RNF31, GLYCEROL, RanBP-type and C3HC4-type zinc finger-containing protein 1, ...
Authors:Tokunaga, A, Fujita, H, Ariyoshi, M, Ohki, I, Tochio, H, Iwai, K, Shirakawa, M.
Deposit date:2017-07-31
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Cooperative Domain Formation by Homologous Motifs in HOIL-1L and SHARPIN Plays A Crucial Role in LUBAC Stabilization.
Cell Rep, 23, 2018
8HFP
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BU of 8hfp by Molmil
Crystal structure of the methyl-CpG-binding domain of SETDB2 in complex with the cysteine-rich domain of C11orf46 protein
Descriptor: ARL14 effector protein, Histone-lysine N-methyltransferase SETDB2, SULFATE ION, ...
Authors:Mahana, Y, Ariyoshi, M, Shirakawa, M.
Deposit date:2022-11-11
Release date:2023-11-22
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structural evidence for protein-protein interaction between the non-canonical methyl-CpG-binding domain of SETDB proteins and C11orf46.
Structure, 32, 2024
2ROE
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BU of 2roe by Molmil
Solution structure of thermus thermophilus HB8 TTHA1718 protein in vitro
Descriptor: Heavy metal binding protein
Authors:Sakakibara, D, Sasaki, A, Ikeya, T, Hamatsu, J, Koyama, H, Mishima, M, Mikawa, T, Waelchli, M, Smith, B.O, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2008-03-20
Release date:2009-03-03
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Protein structure determination in living cells by in-cell NMR spectroscopy
Nature, 458, 2009
2RPQ
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BU of 2rpq by Molmil
Solution Structure of a SUMO-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
Descriptor: Activating transcription factor 7-interacting protein 1, Small ubiquitin-related modifier 2
Authors:Sekiyama, N, Ikegami, T, Yamane, T, Ikeguchi, M, Uchimura, Y, Baba, D, Ariyoshi, M, Tochio, H, Saitoh, H, Shirakawa, M.
Deposit date:2008-07-07
Release date:2008-10-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
J.Biol.Chem., 283, 2008
1XPA
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BU of 1xpa by Molmil
SOLUTION STRUCTURE OF THE DNA-AND RPA-BINDING DOMAIN OF THE HUMAN REPAIR FACTOR XPA, NMR, 1 STRUCTURE
Descriptor: XPA, ZINC ION
Authors:Ikegami, T, Kuraoka, I, Saijo, M, Kodo, N, Kyogoku, Y, Morikawa, K, Tanaka, K, Shirakawa, M.
Deposit date:1998-07-06
Release date:1999-07-22
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the DNA- and RPA-binding domain of the human repair factor XPA.
Nat.Struct.Biol., 5, 1998
2RR9
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BU of 2rr9 by Molmil
The solution structure of the K63-Ub2:tUIMs complex
Descriptor: Putative uncharacterized protein UIMC1, ubiquitin
Authors:Sekiyama, N, Jee, J, Isogai, S, Akagi, K, Huang, T, Ariyoshi, M, Tochio, H, Shirakawa, M.
Deposit date:2010-06-16
Release date:2011-07-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of the K63-Ub2:tUIMs complex
To be Published
2RRE
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BU of 2rre by Molmil
Structure and function of the N-terminal nucleolin binding domain of nuclear valocine containing protein like 2 (NVL2) harboring a nucleolar localization signal
Descriptor: Putative uncharacterized protein
Authors:Fujiwara, Y, Fujiwara, K, Goda, N, Iwaya, N, Tenno, T, Shirakawa, M, Hiroaki, H.
Deposit date:2010-08-03
Release date:2011-04-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and function of the N-terminal nucleolin binding domain of nuclear valosin-containing protein-like 2 (NVL2) harboring a nucleolar localization signal
J.Biol.Chem., 286, 2011
2RRU
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BU of 2rru by Molmil
Solution structure of the UBA omain of p62 and its interaction with ubiquitin
Descriptor: Sequestosome-1
Authors:Isogai, S, Morimoto, D, Arita, K, Unzai, S, Tenno, T, Hasegawa, J, Sou, Y, Komatsu, M, Tanaka, K, Shirakawa, M, Tochio, H.
Deposit date:2011-06-09
Release date:2011-06-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Crystal structure of the UBA omain of p62 and its interaction with ubiquitin
To be Published
1IG4
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BU of 1ig4 by Molmil
Solution Structure of the Methyl-CpG-Binding Domain of Human MBD1 in Complex with Methylated DNA
Descriptor: 5'-D(*GP*TP*AP*TP*CP*(5CM)P*GP*GP*AP*TP*AP*C)-3', Methyl-CpG Binding Protein
Authors:Ohki, I, Shimotake, N, Fujita, N, Jee, J.-G, Ikegami, T, Nakao, M, Shirakawa, M.
Deposit date:2001-04-17
Release date:2001-05-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA.
Cell(Cambridge,Mass.), 105, 2001
5ZCZ
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BU of 5zcz by Molmil
Solution structure of the T. Thermophilus HB8 TTHA1718 protein in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: Heavy metal binding protein
Authors:Tanaka, T, Teppei, I, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-02-22
Release date:2019-08-21
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
5ZD0
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BU of 5zd0 by Molmil
Solution structure of human ubiquitin with three alanine mutations in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: ubiquitin
Authors:Tanaka, T, Ikeya, T, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-02-22
Release date:2019-08-21
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
5Z4B
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BU of 5z4b by Molmil
GB1 structure determination in living eukaryotic cells by in-cell NMR spectroscopy
Descriptor: Protein LG
Authors:Tanaka, T, Teppei, I, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2018-01-10
Release date:2019-01-23
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
Angew.Chem.Int.Ed.Engl., 58, 2019
2ROG
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BU of 2rog by Molmil
Solution structure of Thermus thermophilus HB8 TTHA1718 protein in living E. coli cells
Descriptor: Heavy metal binding protein
Authors:Sakakibara, D, Sasaki, A, Ikeya, T, Hamatsu, J, Koyama, H, Mishima, M, Mikawa, T, Waelchli, M, Smith, B.O, Shirakawa, M, Guentert, P, Ito, Y.
Deposit date:2008-03-21
Release date:2009-03-03
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Protein structure determination in living cells by in-cell NMR spectroscopy
Nature, 458, 2009
2RRI
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BU of 2rri by Molmil
NMR structure of vasoactive intestinal peptide in DPC Micelle
Descriptor: Vasoactive intestinal peptide
Authors:Umetsu, Y, Tenno, T, Goda, N, Shirakawa, M, Ikegami, T, Hiroaki, H.
Deposit date:2010-12-21
Release date:2011-04-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural difference of vasoactive intestinal peptide in two distinct membrane-mimicking environments
Biochim.Biophys.Acta, 1814, 2011
2RQQ
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BU of 2rqq by Molmil
Structure of C-terminal region of Cdt1
Descriptor: DNA replication factor Cdt1
Authors:Jee, J.G, Mizuno, T, Kamada, K, Tochio, H, Hiroaki, H, Hanaoka, F, Shirakawa, M.
Deposit date:2009-10-14
Release date:2010-03-23
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure and mutagenesis studies of the C-terminal region of licensing factor Cdt1 enable the identification of key residues for binding to replicative helicase Mcm proteins
J.Biol.Chem., 285, 2010
2RPA
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BU of 2rpa by Molmil
The solution structure of N-terminal domain of microtubule severing enzyme
Descriptor: Katanin p60 ATPase-containing subunit A1
Authors:Iwaya, N, Kuwahara, Y, Unzai, S, Nagata, T, Tomii, K, Goda, N, Tochio, H, Shirakawa, M, Hiroaki, H.
Deposit date:2008-05-13
Release date:2009-05-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:A common substrate recognition mode conserved between katanin P60 and VPS4 governs microtubule severing and membrane skeleton reorganization
J.Biol.Chem., 285, 2010
7CJV
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BU of 7cjv by Molmil
Solution structure of monomeric superoxide dismutase 1 with an additional mutation H46W in a dilute environment
Descriptor: Monomeric Human Cu,Zn Superoxide dismutase
Authors:Iwakawa, N, Morimoto, D, Walinda, E, Danielsson, J, Shirakawa, M, Sugase, K.
Deposit date:2020-07-14
Release date:2021-05-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Transient Diffusive Interactions with a Protein Crowder Affect Aggregation Processes of Superoxide Dismutase 1 beta-Barrel.
J.Phys.Chem.B, 125, 2021
7CJW
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BU of 7cjw by Molmil
Solution structure of monomeric superoxide dismutase 1 with an additional mutation H46W in a crowded environment
Descriptor: Monomeric Human Cu,Zn Superoxide dismutase
Authors:Iwakawa, N, Morimoto, D, Walinda, E, Danielsson, J, Shirakawa, M, Sugase, K.
Deposit date:2020-07-14
Release date:2021-05-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Transient Diffusive Interactions with a Protein Crowder Affect Aggregation Processes of Superoxide Dismutase 1 beta-Barrel.
J.Phys.Chem.B, 125, 2021
7D8K
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BU of 7d8k by Molmil
Solution structure of the methyl-CpG binding domain of MBD6 from Arabidopsis thaliana
Descriptor: Methyl-CpG-binding domain-containing protein 6
Authors:Mahana, Y, Ohki, I, Walinda, E, Morimoto, D, Sugase, K, Shirakawa, M.
Deposit date:2020-10-08
Release date:2021-10-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Insights into Methylated DNA Recognition by the Methyl-CpG Binding Domain of MBD6 from Arabidopsis thaliana .
Acs Omega, 7, 2022
1D9N
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BU of 1d9n by Molmil
SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF THE METHYLATION-DEPENDENT TRANSCRIPTIONAL REPRESSOR MBD1/PCM1
Descriptor: METHYL-CPG-BINDING PROTEIN MBD1
Authors:Ohki, I, Shimotake, N, Fujita, N, Nakao, M, Shirakawa, M.
Deposit date:1999-10-28
Release date:2000-10-28
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the methyl-CpG-binding domain of the methylation-dependent transcriptional repressor MBD1.
EMBO J., 18, 1999
2MGW
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BU of 2mgw by Molmil
Solution Structure of the UBA Domain of Human NBR1
Descriptor: Next to BRCA1 gene 1 protein
Authors:Walinda, E, Morimoto, D, Sugase, K, Komatsu, M, Tochio, H, Shirakawa, M.
Deposit date:2013-11-09
Release date:2014-04-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin.
J.Biol.Chem., 289, 2014
2MJ5
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BU of 2mj5 by Molmil
Structure of the UBA Domain of Human NBR1 in Complex with Ubiquitin
Descriptor: Next to BRCA1 gene 1 protein, Polyubiquitin-C
Authors:Walinda, E, Morimoto, D, Sugase, K, Komatsu, M, Tochio, H, Shirakawa, M.
Deposit date:2013-12-25
Release date:2014-04-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin.
J.Biol.Chem., 289, 2014

 

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