Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 69 results

5VNV
DownloadVisualize
BU of 5vnv by Molmil
Crystal structure of Nb.b201
Descriptor: FORMIC ACID, Nb.b201, PENTAETHYLENE GLYCOL, ...
Authors:Kruse, A.C, McMahon, C.
Deposit date:2017-05-01
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Yeast surface display platform for rapid discovery of conformationally selective nanobodies.
Nat. Struct. Mol. Biol., 25, 2018
4DAJ
DownloadVisualize
BU of 4daj by Molmil
Structure of the M3 Muscarinic Acetylcholine Receptor
Descriptor: (1R,2R,4S,5S,7S)-7-{[hydroxy(dithiophen-2-yl)acetyl]oxy}-9,9-dimethyl-3-oxa-9-azoniatricyclo[3.3.1.0~2,4~]nonane, Muscarinic acetylcholine receptor M3, Lysozyme, ...
Authors:Kruse, A.C, Hu, J, Pan, A.C, Arlow, D.H, Rosenbaum, D.M, Rosemond, E, Green, H.F, Liu, T, Chae, P.S, Dror, R.O, Shaw, D.E, Weis, W.I, Wess, J, Kobilka, B.
Deposit date:2012-01-12
Release date:2012-02-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure and dynamics of the M3 muscarinic acetylcholine receptor.
Nature, 482, 2012
4MQS
DownloadVisualize
BU of 4mqs by Molmil
Structure of active human M2 muscarinic acetylcholine receptor bound to the agonist iperoxo
Descriptor: 4-(4,5-dihydro-1,2-oxazol-3-yloxy)-N,N,N-trimethylbut-2-yn-1-aminium, Muscarinic acetylcholine receptor M2, Nanobody 9-8
Authors:Kruse, A.C, Ring, A.M, Manglik, A, Hu, J, Hu, K, Eitel, K, Huebner, H, Pardon, E, Valant, C, Sexton, P.M, Christopoulos, A, Felder, C.C, Gmeiner, P, Steyaert, J, Weis, W.I, Garcia, K.C, Wess, J, Kobilka, B.K.
Deposit date:2013-09-16
Release date:2013-11-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Activation and allosteric modulation of a muscarinic acetylcholine receptor.
Nature, 504, 2013
4MQT
DownloadVisualize
BU of 4mqt by Molmil
Structure of active human M2 muscarinic acetylcholine receptor bound to the agonist iperoxo and allosteric modulator LY2119620
Descriptor: 3-amino-5-chloro-N-cyclopropyl-4-methyl-6-[2-(4-methylpiperazin-1-yl)-2-oxoethoxy]thieno[2,3-b]pyridine-2-carboxamide, 4-(4,5-dihydro-1,2-oxazol-3-yloxy)-N,N,N-trimethylbut-2-yn-1-aminium, Muscarinic acetylcholine receptor M2, ...
Authors:Kruse, A.C, Ring, A.M, Manglik, A, Hu, J, Hu, K, Eitel, K, Huebner, H, Pardon, E, Valant, C, Sexton, P.M, Christopoulos, A, Felder, C.C, Gmeiner, P, Steyaert, J, Weis, W.I, Garcia, K.C, Wess, J, Kobilka, B.K.
Deposit date:2013-09-16
Release date:2013-11-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Activation and allosteric modulation of a muscarinic acetylcholine receptor.
Nature, 504, 2013
3QIU
DownloadVisualize
BU of 3qiu by Molmil
Crystal structure of the 226 TCR in complex with MCC/I-Ek
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K alpha chain, ...
Authors:Kruse, A.C, Ely, L.K, Newell, E.W, Davis, M.M, Garcia, K.C.
Deposit date:2011-01-27
Release date:2011-04-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of specificity and cross-reactivity in T cell receptors specific for cytochrome c-I-E(k).
J.Immunol., 186, 2011
3QIW
DownloadVisualize
BU of 3qiw by Molmil
Crystal structure of the 226 TCR in complex with MCC-p5E/I-Ek
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K alpha chain, ...
Authors:Kruse, A.C, Ely, L.K, Newell, E.W, Davis, M.M, Garcia, K.C.
Deposit date:2011-01-27
Release date:2011-04-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of specificity and cross-reactivity in T cell receptors specific for cytochrome c-I-E(k).
J.Immunol., 186, 2011
3K55
DownloadVisualize
BU of 3k55 by Molmil
Structure of beta hairpin deletion mutant of beta toxin from Staphylococcus aureus
Descriptor: Beta-hemolysin, CHLORIDE ION, SODIUM ION
Authors:Kruse, A.C, Huseby, M, Shi, K, Digre, J, Ohlendorf, D.H, Earhart, C.A.
Deposit date:2009-10-06
Release date:2011-01-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Structure of a mutant beta toxin from Staphylococcus aureus reveals domain swapping and conformational flexibility
Acta Crystallogr.,Sect.F, 67, 2011
3HL6
DownloadVisualize
BU of 3hl6 by Molmil
Staphylococcus aureus pathogenicity island 3 ORF9 protein
Descriptor: CHLORIDE ION, Pathogenicity island protein
Authors:Kruse, A.C, Huseby, M, Shi, K, Digre, J, Schlievert, P.M, Ohlendorf, D.H, Earhart, C.A.
Deposit date:2009-05-26
Release date:2010-06-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and functional studies of a pathogenicity island protein from Staphylococcus aureus
To be Published
8UFH
DownloadVisualize
BU of 8ufh by Molmil
Acinetobacter baylyi LptB2FG bound to Acinetobacter baylyi lipopolysaccharide and a macrocyclic peptide
Descriptor: (2~{R},4~{R},5~{R},6~{R})-2-[(2~{R},4~{R},5~{R},6~{R})-5-[(2~{S},4~{R},5~{R},6~{R})-4-[(2~{R},3~{R},4~{R},5~{S},6~{S})-3-acetamido-6-carboxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-carboxy-5-oxidanyl-oxan-2-yl]oxy-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-carboxy-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-4-[(3~{S})-3-dodecanoyloxydodecanoyl]oxy-6-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[(3~{R})-3-heptanoyloxynonanoyl]amino]-3-oxidanyl-4-[(3~{R})-3-oxidanyloctanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-5-[[(3~{S})-3-[(3~{R})-3-oxidanyldodecanoyl]oxydecanoyl]amino]-3-phosphonooxy-oxan-2-yl]methoxy]oxan-4-yl]oxy-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-4,5-bis(oxidanyl)oxane-2-carboxylic acid, (7S,10S,13S,17P)-10-(4-aminobutyl)-7-(3-aminopropyl)-17-(6-aminopyridin-3-yl)-20-chloro-13-[(1H-indol-3-yl)methyl]-12-methyl-6,7,9,10,12,13,15,16-octahydropyrido[2,3-b][1,5,8,11,14]benzothiatetraazacycloheptadecine-8,11,14(5H)-trione, LPS export ABC transporter permease LptG, ...
Authors:Pahil, K.S, Gilman, M.S.A, Baidin, V, Kruse, A.C, Kahne, D.
Deposit date:2023-10-04
Release date:2024-01-03
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A new antibiotic traps lipopolysaccharide in its intermembrane transporter.
Nature, 625, 2024
8UFG
DownloadVisualize
BU of 8ufg by Molmil
Acinetobacter baylyi LptB2FG bound to Acinetobacter baylyi lipopolysaccharide
Descriptor: (2~{R},4~{R},5~{R},6~{R})-2-[(2~{R},4~{R},5~{R},6~{R})-5-[(2~{S},4~{R},5~{R},6~{R})-4-[(2~{R},3~{R},4~{R},5~{S},6~{S})-3-acetamido-6-carboxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-carboxy-5-oxidanyl-oxan-2-yl]oxy-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-carboxy-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-4-[(3~{S})-3-dodecanoyloxydodecanoyl]oxy-6-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[(3~{R})-3-heptanoyloxyundecanoyl]amino]-3-oxidanyl-4-[(3~{R})-3-oxidanyloctanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-5-[[(3~{S})-3-[(3~{R})-3-oxidanyldecanoyl]oxydecanoyl]amino]-3-phosphonooxy-oxan-2-yl]methoxy]oxan-4-yl]oxy-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-4,5-bis(oxidanyl)oxane-2-carboxylic acid, DODECYL-BETA-D-MALTOSIDE, LPS export ABC transporter permease LptG, ...
Authors:Pahil, K.S, Gilman, M.S.A, Baidin, V, Kruse, A.C, Kahne, D.
Deposit date:2023-10-04
Release date:2024-01-03
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A new antibiotic traps lipopolysaccharide in its intermembrane transporter.
Nature, 625, 2024
7M93
DownloadVisualize
BU of 7m93 by Molmil
Bovine sigma-2 receptor bound to PB28
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, PB28, Sigma intracellular receptor 2
Authors:Alon, A, Kruse, A.C.
Deposit date:2021-03-30
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Structures of the sigma 2 receptor enable docking for bioactive ligand discovery.
Nature, 600, 2021
6DK1
DownloadVisualize
BU of 6dk1 by Molmil
Human sigma-1 receptor bound to (+)-pentazocine
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S,6S,11S)-6,11-dimethyl-3-(3-methylbut-2-en-1-yl)-1,2,3,4,5,6-hexahydro-2,6-methano-3-benzazocin-8-ol, GLYCEROL, ...
Authors:Schmidt, H.R, Kruse, A.C.
Deposit date:2018-05-28
Release date:2018-10-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Structural basis for sigma1receptor ligand recognition.
Nat. Struct. Mol. Biol., 25, 2018
6D32
DownloadVisualize
BU of 6d32 by Molmil
Crystal structure of Xenopus Smoothened in complex with cyclopamine
Descriptor: Cyclopamine, Smoothened,Soluble cytochrome b562,Smoothened
Authors:Huang, P, Zheng, S, Kim, Y, Kruse, A.C, Salic, A.
Deposit date:2018-04-14
Release date:2018-05-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.751 Å)
Cite:Structural Basis of Smoothened Activation in Hedgehog Signaling.
Cell, 174, 2018
7M95
DownloadVisualize
BU of 7m95 by Molmil
Bovine sigma-2 receptor bound to Z1241145220
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 3-[1-(3-phenylpropyl)-1,2,3,6-tetrahydropyridin-4-yl]-1H-pyrrolo[2,3-b]pyridine, CHOLESTEROL, ...
Authors:Alon, A, Kruse, A.C.
Deposit date:2021-03-30
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Structures of the sigma 2 receptor enable docking for bioactive ligand discovery.
Nature, 600, 2021
7M96
DownloadVisualize
BU of 7m96 by Molmil
Bovine sigma-2 receptor bound to Z4857158944
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-({[(1S)-1-hydroxy-2-methyl-1-phenylpropan-2-yl]amino}methyl)-1-methyl-3,4-dihydroquinolin-2(1H)-one, ...
Authors:Alon, A, Kruse, A.C.
Deposit date:2021-03-30
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Structures of the sigma 2 receptor enable docking for bioactive ligand discovery.
Nature, 600, 2021
7M94
DownloadVisualize
BU of 7m94 by Molmil
Bovine sigma-2 receptor bound to Roluperidone
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Roluperidone, Sigma intracellular receptor 2
Authors:Alon, A, Kruse, A.C.
Deposit date:2021-03-30
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structures of the sigma 2 receptor enable docking for bioactive ligand discovery.
Nature, 600, 2021
7MFI
DownloadVisualize
BU of 7mfi by Molmil
Bovine sigma-2 receptor bound to cholesterol
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHOLESTEROL, ...
Authors:Alon, A, Kruse, A.C.
Deposit date:2021-04-09
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Structures of the sigma 2 receptor enable docking for bioactive ligand discovery.
Nature, 600, 2021
6DO1
DownloadVisualize
BU of 6do1 by Molmil
Structure of nanobody-stabilized angiotensin II type 1 receptor bound to S1I8
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-like peptide S1I8, ...
Authors:Wingler, L.M, McMahon, C, Staus, D.P, Lefkowitz, R.J, Kruse, A.C.
Deposit date:2018-06-08
Release date:2019-01-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.901 Å)
Cite:Distinctive Activation Mechanism for Angiotensin Receptor Revealed by a Synthetic Nanobody.
Cell, 176, 2019
5TCX
DownloadVisualize
BU of 5tcx by Molmil
Crystal structure of human tetraspanin CD81
Descriptor: CD81 antigen, CHOLESTEROL
Authors:Zimmerman, B, McMillan, B.J, Seegar, T.C.M, Kruse, A.C, Blacklow, S.C.
Deposit date:2016-09-16
Release date:2016-11-09
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.955 Å)
Cite:Crystal Structure of a Full-Length Human Tetraspanin Reveals a Cholesterol-Binding Pocket.
Cell, 167, 2016
7JIC
DownloadVisualize
BU of 7jic by Molmil
Structure of human CD19-CD81 co-receptor complex bound to coltuximab Fab fragment
Descriptor: B-lymphocyte antigen CD19, CD81 antigen, Coltuximab Heavy Chain, ...
Authors:Susa, K.J, Rawson, S, Kruse, A.C, Blacklow, S.C.
Deposit date:2020-07-23
Release date:2021-01-20
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structure of the B cell co-receptor CD19 bound to the tetraspanin CD81
Science, 371, 2021
7TMW
DownloadVisualize
BU of 7tmw by Molmil
Cryo-EM structure of the relaxin receptor RXFP1 in complex with heterotrimeric Gs
Descriptor: Camelid antibody VHH fragment Nb35, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Erlandson, S.C, Rawson, S, Kruse, A.C.
Deposit date:2022-01-20
Release date:2023-02-15
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The relaxin receptor RXFP1 signals through a mechanism of autoinhibition.
Nat.Chem.Biol., 19, 2023
5VNW
DownloadVisualize
BU of 5vnw by Molmil
Crystal structure of Nb.b201 bound to human serum albumin
Descriptor: GLYCEROL, LAURIC ACID, Nb.b201, ...
Authors:McMahon, C, Kruse, A.C.
Deposit date:2017-05-01
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Yeast surface display platform for rapid discovery of conformationally selective nanobodies.
Nat. Struct. Mol. Biol., 25, 2018
4QKX
DownloadVisualize
BU of 4qkx by Molmil
Structure of beta2 adrenoceptor bound to a covalent agonist and an engineered nanobody
Descriptor: 4-[(1R)-1-hydroxy-2-({2-[3-methoxy-4-(2-sulfanylethoxy)phenyl]ethyl}amino)ethyl]benzene-1,2-diol, Beta-2 adrenergic receptor, R9 protein, ...
Authors:Weichert, D, Kruse, A.C, Manglik, A, Hiller, C, Zhang, C, Huebner, H, Kobilka, B.K, Gmeiner, P.
Deposit date:2014-06-10
Release date:2014-07-23
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Covalent agonists for studying G protein-coupled receptor activation.
Proc.Natl.Acad.Sci.USA, 111, 2014
7T83
DownloadVisualize
BU of 7t83 by Molmil
Structure of angiotensin II type I receptor (AT1R) nanobody antagonist AT118i4h32
Descriptor: CITRATE ANION, Nanobody AT118i4h32
Authors:Skiba, M.A, Kruse, A.C.
Deposit date:2021-12-15
Release date:2022-12-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An in silico method to assess antibody fragment polyreactivity.
Nat Commun, 13, 2022
7T84
DownloadVisualize
BU of 7t84 by Molmil
Structure of angiotensin II type I receptor (AT1R) nanobody antagonist AT118i4h32 G26D T57I variant
Descriptor: CITRIC ACID, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Nemeth, G.R, Skiba, M.A, Kruse, A.C.
Deposit date:2021-12-15
Release date:2022-12-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:An in silico method to assess antibody fragment polyreactivity.
Nat Commun, 13, 2022

 

123>

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon