... files for entries that can be represented in this legacy file format (e.g., entries with over 99,999 atoms or with multi-character chain ...

... an in-depth search using the given query for the associated category (e.g. for "PDB keywords" above, a PDBj Mine keyword search will be ...

... to use freely as far as the purpose is related to PDBj (e.g. for linking to the PDBj website and using in flyers of ...

... also set up exhibits at events for general and high school students (e.g. Science Festa Osaka). With the Support Fund for Protein Data Bank ...

... will be extending PDB ID length to eight characters prefixed by ‘pdb’, e.g., pdb_00001abc. Each PDB entry has a corresponding Digital Object Identifier ...

... provided to us on the Contact Us page, such as your name, e-mail address etc. - Access information, such as your IP address, domain name ...

... _comp models and PRD/BIRD entries via our Data site and can e.g. be retrieved via rsync from the following locations: PDB entriesallhttps://data ...

... names. URLs in which the DNS name doesn’t match the protocol (e.g., https://ftp.wwpdb.org, ftp://files.wwpdb.org) will no longer ...

... legacy system like ADIT or ADIT-NMR, we encourage to reply the e-mail from wwPDB annotators. If these means are not available, please use ...

... functional and classification information as taken from the core structures and from e\ xternal resources. All PDB entries containing these molecules have been annotated using ...

... -care at Germany. Furthermore, to ensure continued Findability of 118 common oligosaccharides (e.g., sucrose, Lewis Y antigen), we have expanded the Biologically Interesting molecule ...

... information between their monomeric units. To ensure continued Findability of common oligosaccharides (e.g., sucrose, Lewis X factor), we have expanded the Biologically Interesting molecule ...

... SIFTS schema so that the user should access them prefixing with "sifts." (e.g., sifts.pdb_chain_uniprot, etc.). CREATE TABLE pdb_chain_uniprot ( pdbid ...

... use this from now on. You can also access the PDBMLadd files. e.g.: ftp://ftp.pdbj.org/XML/pdbmlplus/pdbml_add/100d-add.xml ...

... format for storing NMR data, supported by an extensive dictionary [GitHub; Ulrich, E. L. et al. (2019) NMR-STAR: comprehensive ontology for representing, archiving and ...

... is "Y", it means that the entry is PDB format compatible (i.e. a conventional type compatible with the PDB format). If it is "N ...

... of large molecular assemblies. Goddard, T.D., Huang, C.C., Ferrin, T.E. Structure 13: 473-482 (2005) [doi:10.1016/j.str.2005.01 ...

... , together with XML files that contain exhaustive validation information for each entry (e.g., complete lists of outliers for every criterion). Validation pipelines for structures ...

... format for storing NMR data, supported by an extensive dictionary [GitHub; Ulrich, E. L. et al. (2019) NMR-STAR: comprehensive ontology for representing, archiving and ...

... segments named $line##A*** and $line##B***, where ## is mode number (i.e., ## = 01, 02, ..., 10) and *** is serial number of the displacement vector. If ...

... whatsoever. If the use of the Software contributes to a scientific publication, e.g., in a journal, conference paper or a book chapter, the author ...

... structures. The pairs which score above a certain threshold (Sequence identity30% and E-value0.1) arelinked. The set is first clustered using single-linkage clustering ...

... short, ”noatom” files are PDBML files without the atom_site category (i.e., no atomic coordinates). - PDBML-extatom In short, ”extatom” files contain only atomic ...

... structures of several GlcNAc-Ins deacetylases from Mycobacterium tuberculosis have been solved (e.g., 1q7t, 1q74 ). These structures can be identified by Sequence Navigator and ...

... DVD sent to you, please contact RCSB PDB in the USA by e-mail at cddvd@rcsb.rutgers.edu. The announcement was made in a ...